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Search of human proteins with 5902158
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5902158 ring finger protein 113A [Homo sapiens]
(343 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5902158 ring finger protein 113A [Homo sapiens] 721 0.0
gi|30578416 ring finger protein 113B [Homo sapiens] 481 e-136
gi|88999601 tripartite motif-containing 69 isoform a [Homo sapiens] 44 3e-04
gi|33300663 polycomb group ring finger 5 [Homo sapiens] 42 8e-04
gi|109134327 PTD016 protein [Homo sapiens] 42 8e-04
gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens] 40 0.002
gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens] 40 0.002
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 40 0.003
gi|21071052 helicase-like transcription factor [Homo sapiens] 40 0.004
gi|21071054 helicase-like transcription factor [Homo sapiens] 40 0.004
gi|30023818 tripartite motif protein 50A [Homo sapiens] 40 0.004
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens] 40 0.004
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens] 40 0.004
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 40 0.004
gi|68160937 tripartite motif-containing 25 [Homo sapiens] 39 0.005
gi|31542779 tripartite motif family-like 1 [Homo sapiens] 39 0.007
gi|45594312 TNF receptor-associated factor 7 [Homo sapiens] 39 0.009
gi|94536782 tripartite motif-containing 35 isoform 2 [Homo sapiens] 39 0.009
gi|217035095 tripartite motif-containing 62 [Homo sapiens] 38 0.012
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 38 0.012
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s... 38 0.015
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 38 0.015
gi|37595555 ring finger protein 125 [Homo sapiens] 37 0.020
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 37 0.026
gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [H... 37 0.026
gi|13376844 ring finger protein 39 isoform 1 [Homo sapiens] 37 0.026
gi|25777716 ring finger protein 39 isoform 2 [Homo sapiens] 37 0.026
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 37 0.026
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 37 0.026
gi|22027627 TNF receptor-associated factor 5 [Homo sapiens] 37 0.034
>gi|5902158 ring finger protein 113A [Homo sapiens]
Length = 343
Score = 721 bits (1860), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MAEQLSPGKAVDQVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKR 60
MAEQLSPGKAVDQVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKR
Sbjct: 1 MAEQLSPGKAVDQVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKR 60
Query: 61 VTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVY 120
VTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVY
Sbjct: 61 VTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVY 120
Query: 121 ELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRK 180
ELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRK
Sbjct: 121 ELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRK 180
Query: 181 GPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGR 240
GPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGR
Sbjct: 181 GPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGR 240
Query: 241 YGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCD 300
YGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCD
Sbjct: 241 YGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCD 300
Query: 301 QQTNGVFNPAKELIAKLEKHRATGEGGASDLPEDPDEDAIPIT 343
QQTNGVFNPAKELIAKLEKHRATGEGGASDLPEDPDEDAIPIT
Sbjct: 301 QQTNGVFNPAKELIAKLEKHRATGEGGASDLPEDPDEDAIPIT 343
>gi|30578416 ring finger protein 113B [Homo sapiens]
Length = 322
Score = 481 bits (1238), Expect = e-136
Identities = 236/325 (72%), Positives = 265/325 (81%), Gaps = 12/325 (3%)
Query: 1 MAEQLSPGKAVDQ---VCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPE 57
MA SPG+ DQ VCTFLFKKPGRKGAAG RKRPACDPE GES SS DEG TV +P
Sbjct: 1 MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP 60
Query: 58 KKRVTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGAT 117
RV P + QKAA+GD EE PESL VVY+STRSAKPVGPEDMGAT
Sbjct: 61 --RVAPRPRGLHSW----QKAAHGDRRGEEAA---PESLDVVYRSTRSAKPVGPEDMGAT 111
Query: 118 AVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGM 177
A +E DTEKE I + SQ++QE LRG+E D IYRGI++Y +Y+KPKDTSMGN+SSGM
Sbjct: 112 ADFEQDTEKEHHTPTILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGM 171
Query: 178 VRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELD 237
RKGPIRAP HLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYK GW+IEREL+
Sbjct: 172 ARKGPIRAPGHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELE 231
Query: 238 EGRYGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCY 297
EGRY + EDEN+EVGS++EEIPF+CFICRQ+FQNPVVTKCRHYFCESCAL+HFR TPRCY
Sbjct: 232 EGRYCICEDENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCY 291
Query: 298 VCDQQTNGVFNPAKELIAKLEKHRA 322
+CDQ T G+FNPAKEL+AKL+K +A
Sbjct: 292 ICDQPTGGIFNPAKELMAKLQKLQA 316
>gi|88999601 tripartite motif-containing 69 isoform a [Homo sapiens]
Length = 500
Score = 43.5 bits (101), Expect = 3e-04
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 236 LDEGRYGVYEDENYEVGS----DDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFR 291
+D G Y D + S D + C +C F++P++ C H FCE+C +R
Sbjct: 11 IDPGDYVEMNDSITHLPSKVVIQDITMELHCPLCNDWFRDPLMLSCGHNFCEACIQDFWR 70
Query: 292 T------TPRCYVCDQQTNGVFNPA-KELIAKLEK 319
P C + Q N FNP +L+ K++K
Sbjct: 71 LQAKETFCPECKMLCQYNNCTFNPVLDKLVEKIKK 105
>gi|33300663 polycomb group ring finger 5 [Homo sapiens]
Length = 256
Score = 42.0 bits (97), Expect = 8e-04
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 262 CFICRQSFQNPV-VTKCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKEL 313
C+IC+ P VT+C H FC++C +QHF + C C Q + NP + L
Sbjct: 18 CYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSNDCPRCGNQVHET-NPLEML 69
>gi|109134327 PTD016 protein [Homo sapiens]
Length = 435
Score = 42.0 bits (97), Expect = 8e-04
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 253 SDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVC 299
SD ++I C IC+ FQ P++ C+H FCE C F C +C
Sbjct: 369 SDVDDI---CSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLC 412
>gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens]
Length = 350
Score = 40.4 bits (93), Expect = 0.002
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 245 EDENYEVGSDDEEIPF-KCFICR-QSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCD-- 300
EDE + + E P+ C IC+ +T+C H FC+SC ++HF + RC C+
Sbjct: 116 EDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIV 175
Query: 301 -QQTNGVFN 308
QT ++N
Sbjct: 176 VHQTQPLYN 184
>gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens]
Length = 275
Score = 40.4 bits (93), Expect = 0.002
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 245 EDENYEVGSDDEEIPF-KCFICR-QSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCD-- 300
EDE + + E P+ C IC+ +T+C H FC+SC ++HF + RC C+
Sbjct: 116 EDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIV 175
Query: 301 -QQTNGVFN 308
QT ++N
Sbjct: 176 VHQTQPLYN 184
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 40.0 bits (92), Expect = 0.003
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 260 FKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQ 301
F+C +C + F PV T C H FC++C + P C +C +
Sbjct: 477 FECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKE 518
Score = 32.3 bits (72), Expect = 0.63
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 261 KCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVC 299
+C CR PV C H +C C + R RC +C
Sbjct: 122 RCLGCRGFLSEPVTVPCGHSYCRRCLRRELRA--RCRLC 158
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 39.7 bits (91), Expect = 0.004
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 252 GSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESC---ALQHFRTTPRCYVCD---QQTNG 305
GSD+E C IC S PV+T C H FC+ C +Q+ + +C +C + N
Sbjct: 755 GSDEE-----CAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNL 809
Query: 306 VFNPAKELIAKLEK 319
+ P +EL EK
Sbjct: 810 LECPPEELARDSEK 823
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 39.7 bits (91), Expect = 0.004
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 252 GSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESC---ALQHFRTTPRCYVCD---QQTNG 305
GSD+E C IC S PV+T C H FC+ C +Q+ + +C +C + N
Sbjct: 755 GSDEE-----CAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNL 809
Query: 306 VFNPAKELIAKLEK 319
+ P +EL EK
Sbjct: 810 LECPPEELARDSEK 823
>gi|30023818 tripartite motif protein 50A [Homo sapiens]
Length = 487
Score = 39.7 bits (91), Expect = 0.004
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 261 KCFICRQSFQNPVVTKCRHYFCESCALQ---HFRTTPRCYVCDQQTNGVFN-PAKELIAK 316
+C IC + F+ P++ +C H +C+ C + H RC VC Q +G + P L
Sbjct: 15 QCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAVDGSSSLPNVSLARV 74
Query: 317 LEKHRATGE 325
+E R G+
Sbjct: 75 IEALRLPGD 83
>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 39.7 bits (91), Expect = 0.004
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 253 SDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKE 312
S ++ F+C IC + ++ V++ C H FC C Q T P VC G+ +++
Sbjct: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGI---SRD 86
Query: 313 LIAKLEKHRATGEGGASDLPEDPDEDAIP 341
+ L +TG+ +DP E P
Sbjct: 87 KVIPLYGRGSTGQ-------QDPREKTPP 108
>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 39.7 bits (91), Expect = 0.004
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 253 SDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKE 312
S ++ F+C IC + ++ V++ C H FC C Q T P VC G+ +++
Sbjct: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGI---SRD 86
Query: 313 LIAKLEKHRATGEGGASDLPEDPDEDAIP 341
+ L +TG+ +DP E P
Sbjct: 87 KVIPLYGRGSTGQ-------QDPREKTPP 108
>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
Length = 444
Score = 39.7 bits (91), Expect = 0.004
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 247 ENYEV---GSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCA---LQHFRTTPRC 296
+NY V G E C IC+ F+ P++ C+H FCE C L RT P C
Sbjct: 366 QNYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLC 421
>gi|68160937 tripartite motif-containing 25 [Homo sapiens]
Length = 630
Score = 39.3 bits (90), Expect = 0.005
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 262 CFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQ 301
C IC + F+ PV T C H FC SC + + Y+C Q
Sbjct: 13 CSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQ 52
>gi|31542779 tripartite motif family-like 1 [Homo sapiens]
Length = 468
Score = 38.9 bits (89), Expect = 0.007
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 262 CFICRQSFQNPVVTKCRHYFCESCAL---QHFRTTPRCYVCDQQTNGVFNPAKELIAKL 317
CFIC F +PV T+C H FC C L + T C C + G + E + +L
Sbjct: 16 CFICLDYFSSPVTTECGHSFCLVCLLRSWEEHNTPLSCPECWRTLEGPHFQSNERLGRL 74
>gi|45594312 TNF receptor-associated factor 7 [Homo sapiens]
Length = 670
Score = 38.5 bits (88), Expect = 0.009
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 245 EDENYE--VGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQ 302
E+E E V ++ + C +C F++PV+T C H FC CAL+ + +C V + +
Sbjct: 112 EEEEPEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALK----SEKCPVDNVK 167
Query: 303 TNGVFN--PAKELIAKLEKH-----RATGEGGASDLPEDP 335
V N E I +L H R G G DP
Sbjct: 168 LTVVVNNIAVAEQIGELFIHCRHGCRVAGSGKPPIFEVDP 207
>gi|94536782 tripartite motif-containing 35 isoform 2 [Homo sapiens]
Length = 493
Score = 38.5 bits (88), Expect = 0.009
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 262 CFICRQSFQNPVVTKCRHYFCESCALQ--HFRTTPRCYVC-------DQQTNGVFNPAKE 312
C +C F++ V +C H FC C + + +P C VC D +TN N
Sbjct: 21 CAVCYDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCPVCKDRASPADLRTNHTLN---N 77
Query: 313 LIAKLEKHRATG 324
L+ KL + A G
Sbjct: 78 LVEKLLREEAEG 89
>gi|217035095 tripartite motif-containing 62 [Homo sapiens]
Length = 475
Score = 38.1 bits (87), Expect = 0.012
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 262 CFICRQSFQNPVVTKCRHYFCESCALQHF 290
C IC +Q+PV C HYFC C +H+
Sbjct: 11 CSICLSIYQDPVSLGCEHYFCRRCITEHW 39
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 38.1 bits (87), Expect = 0.012
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 255 DEEIPFKCFICRQSFQNPVVTKCRHYFCESCAL----QHFRTTPRC--YVCDQQTNGVFN 308
D + KC +C + ++P+ T C H FC C L Q RC + ++ N V
Sbjct: 11 DVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHVL- 69
Query: 309 PAKELIAKLE 318
P K LI KL+
Sbjct: 70 PLKRLILKLD 79
>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
sapiens]
Length = 731
Score = 37.7 bits (86), Expect = 0.015
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 254 DDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNGV 306
+D+ F C IC + +TKC H FC C Q RC C+ + +
Sbjct: 128 EDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNI 180
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 37.7 bits (86), Expect = 0.015
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 254 DDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNGV 306
+D+ F C IC + +TKC H FC C Q RC C+ + +
Sbjct: 128 EDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNI 180
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 37.4 bits (85), Expect = 0.020
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 255 DEEIP---FKCFICRQSFQNPVVTKCRHYFCESCALQHFR----TTPRC 296
D E+P F C +C + PV T+C H FC SC + T P C
Sbjct: 27 DPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYC 75
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 37.0 bits (84), Expect = 0.026
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 84 SSEEEEENEPESLGVV-YKSTRSAKPVGPEDM--GATAVYELDTEKERDAQAIFERSQKI 140
+SEE E P + G YKS R P E GA A++ ++ +D + E +K
Sbjct: 120 TSEESENENPHARGSFSYKSLRKGGPSQREQYLPGAIALFNVNNSSNKDQEP--EEKKKK 177
Query: 141 QEELRGKEDDKIYRGINNYQKYMKPKD 167
++E + K DDK N+ +K K KD
Sbjct: 178 KKEKKSKSDDK-NENKNDPEKKKKKKD 203
>gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [Homo
sapiens]
Length = 690
Score = 37.0 bits (84), Expect = 0.026
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 84 SSEEEEENEPESLGVV-YKSTRSAKPVGPEDM--GATAVYELDTEKERDAQAIFERSQKI 140
+SEE E P + G YKS R P E GA A++ ++ +D + E +K
Sbjct: 51 TSEESENENPHARGSFSYKSLRKGGPSQREQYLPGAIALFNVNNSSNKDQEP--EEKKKK 108
Query: 141 QEELRGKEDDKIYRGINNYQKYMKPKD 167
++E + K DDK N+ +K K KD
Sbjct: 109 KKEKKSKSDDK-NENKNDPEKKKKKKD 134
>gi|13376844 ring finger protein 39 isoform 1 [Homo sapiens]
Length = 420
Score = 37.0 bits (84), Expect = 0.026
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 262 CFICRQSFQNPVVTKCRHYFCESCALQHFRTTP 294
C +C SF++PV+ C H FC +C + + T P
Sbjct: 88 CPLCGGSFEDPVLLACEHSFCRACLARRWGTPP 120
>gi|25777716 ring finger protein 39 isoform 2 [Homo sapiens]
Length = 354
Score = 37.0 bits (84), Expect = 0.026
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 262 CFICRQSFQNPVVTKCRHYFCESCALQHFRTTP 294
C +C SF++PV+ C H FC +C + + T P
Sbjct: 88 CPLCGGSFEDPVLLACEHSFCRACLARRWGTPP 120
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 37.0 bits (84), Expect = 0.026
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 262 CFICRQSFQNPVVTKCRHYFCESCALQHF----RTTPRCYVCDQ 301
C IC + ++NP V C H FCE C LQ++ T C VC Q
Sbjct: 23 CSICLERYKNPKVLPCLHTFCERC-LQNYIPAHSLTLSCPVCRQ 65
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 37.0 bits (84), Expect = 0.026
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 262 CFICRQSFQNPVVTKCRHYFCESCALQHF----RTTPRCYVCDQ 301
C IC + ++NP V C H FCE C LQ++ T C VC Q
Sbjct: 50 CSICLERYKNPKVLPCLHTFCERC-LQNYIPAHSLTLSCPVCRQ 92
>gi|22027627 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 36.6 bits (83), Expect = 0.034
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 260 FKCFICRQSFQNPVVTKCRHYFCESC--ALQHFRTTPRCYV 298
+KC C NP T C H FC+ C +L+ T P C V
Sbjct: 43 YKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPV 83
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,621,743
Number of Sequences: 37866
Number of extensions: 789686
Number of successful extensions: 4717
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 4187
Number of HSP's gapped (non-prelim): 675
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.