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Search of human proteins with 5902010
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5902010 mitochondrial transcription termination factor
precursor [Homo sapiens]
(399 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5902010 mitochondrial transcription termination factor precur... 789 0.0
gi|74271828 transcription termination factor-like protein [Homo ... 152 5e-37
gi|21314736 transcription termination factor-like protein [Homo ... 152 5e-37
gi|34147676 MTERF domain containing 1 [Homo sapiens] 43 4e-04
gi|13129124 caspase recruitment domain protein 14 isoform 1 [Hom... 34 0.27
gi|6005721 ER lipid raft associated 2 isoform 1 [Homo sapiens] 32 0.78
gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens] 31 1.7
gi|221316624 dystonin isoform 4 [Homo sapiens] 30 2.9
gi|221316622 dystonin isoform 3 [Homo sapiens] 30 2.9
gi|221316618 dystonin isoform 2 [Homo sapiens] 30 2.9
gi|34577047 dystonin isoform 1 [Homo sapiens] 30 2.9
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 30 2.9
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 30 5.0
gi|38348356 testis expressed 9 [Homo sapiens] 30 5.0
gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member... 29 6.6
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 29 6.6
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 29 6.6
gi|222446620 hypothetical protein LOC342346 [Homo sapiens] 29 8.6
gi|226246608 RNA polymerase II associated protein 2 [Homo sapiens] 29 8.6
gi|55770834 centromere protein F [Homo sapiens] 29 8.6
>gi|5902010 mitochondrial transcription termination factor precursor
[Homo sapiens]
Length = 399
Score = 789 bits (2037), Expect = 0.0
Identities = 399/399 (100%), Positives = 399/399 (100%)
Query: 1 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV 60
MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
Sbjct: 1 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV 60
Query: 61 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV 120
KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
Sbjct: 61 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV 120
Query: 121 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI 180
IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
Sbjct: 121 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI 180
Query: 181 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK 240
KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
Sbjct: 181 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK 240
Query: 241 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL 300
NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
Sbjct: 241 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL 300
Query: 301 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK 360
FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
Sbjct: 301 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK 360
Query: 361 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA 399
SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
Sbjct: 361 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA 399
>gi|74271828 transcription termination factor-like protein [Homo
sapiens]
Length = 385
Score = 152 bits (384), Expect = 5e-37
Identities = 98/336 (29%), Positives = 178/336 (52%), Gaps = 7/336 (2%)
Query: 63 HNTDSEPLK-NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVI 121
+ TD + K N ++ L VDI R+ + V T +++ L GA + +
Sbjct: 35 YTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGADETAV 94
Query: 122 ASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIK 181
ASI+ R P AI +P ++ + LW+ + ++ E++ ++E+ PESFF + N + N++
Sbjct: 95 ASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQ 154
Query: 182 FLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDP--ADFVRKIIF 239
F +GL + RLLT AP F N ++ NKQMV LQ + L +G ++ ++ K++
Sbjct: 155 FFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLLKLLS 214
Query: 240 KNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEK 299
+NPFIL+ S +K +EFL+ S E+L L+ + L + S + K
Sbjct: 215 QNPFILLNSPTAIKETLEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKN- 272
Query: 300 LFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTL 359
+ CT+ ++++ VL P +++ + +++ L+ E ISI+QI E P VL+ + +
Sbjct: 273 --AFKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIV 330
Query: 360 KSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKL 395
+ RI++L ++G + ++ L+ SKK +EA K+
Sbjct: 331 QYRIRKLNSSGYRIKDGHLANLNGSKKEFEANFGKI 366
>gi|21314736 transcription termination factor-like protein [Homo
sapiens]
Length = 385
Score = 152 bits (384), Expect = 5e-37
Identities = 98/336 (29%), Positives = 178/336 (52%), Gaps = 7/336 (2%)
Query: 63 HNTDSEPLK-NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVI 121
+ TD + K N ++ L VDI R+ + V T +++ L GA + +
Sbjct: 35 YTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGADETAV 94
Query: 122 ASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIK 181
ASI+ R P AI +P ++ + LW+ + ++ E++ ++E+ PESFF + N + N++
Sbjct: 95 ASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQ 154
Query: 182 FLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDP--ADFVRKIIF 239
F +GL + RLLT AP F N ++ NKQMV LQ + L +G ++ ++ K++
Sbjct: 155 FFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLLKLLS 214
Query: 240 KNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEK 299
+NPFIL+ S +K +EFL+ S E+L L+ + L + S + K
Sbjct: 215 QNPFILLNSPTAIKETLEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKN- 272
Query: 300 LFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTL 359
+ CT+ ++++ VL P +++ + +++ L+ E ISI+QI E P VL+ + +
Sbjct: 273 --AFKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIV 330
Query: 360 KSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKL 395
+ RI++L ++G + ++ L+ SKK +EA K+
Sbjct: 331 QYRIRKLNSSGYRIKDGHLANLNGSKKEFEANFGKI 366
>gi|34147676 MTERF domain containing 1 [Homo sapiens]
Length = 417
Score = 43.1 bits (100), Expect = 4e-04
Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 17/221 (7%)
Query: 147 RKIVTSDLEIVNILERSPES---FFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRT 203
+K+V +++ I E+ PE+ R + +++ + FL VG+ L LT
Sbjct: 157 QKLVLLGVDLSKI-EKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAI 215
Query: 204 FSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTF 263
FS L+ K V +L + S D A VRK PF+L S +R+ + F +
Sbjct: 216 FSEDLENLKTRVAYLHSKNFSKA--DVAQMVRKA----PFLLNFSVERLDNRLGFFQKEL 269
Query: 264 NLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFL 323
L+ ++ L+ + L N+K LG E+Q + P ++
Sbjct: 270 ELSVKKTRDLV----VRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTA 325
Query: 324 AEKKFNDKIDCLMEENISISQ--IIENPRVLDSSISTLKSR 362
+ K + D + +SI I++ P+V ++ + +K R
Sbjct: 326 NKMKLTETFD-FVHNVMSIPHHIIVKFPQVFNTRLFKVKER 365
>gi|13129124 caspase recruitment domain protein 14 isoform 1 [Homo
sapiens]
Length = 1004
Score = 33.9 bits (76), Expect = 0.27
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 36 GSRCWMTRFSAENIFKSVSFRLFGVKCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPG 95
G RCW+TR + E++ + + L V+ + + L D+ ++ + V+ MA+K + G
Sbjct: 881 GGRCWVTRHAVESLMEKNTHALLDVQLDSVCT--LHRMDIFPIVIHVSVNEKMAKKLKKG 938
Query: 96 VFHRMITNEQDL 107
+ R+ T+E+ L
Sbjct: 939 L-QRLGTSEEQL 949
>gi|6005721 ER lipid raft associated 2 isoform 1 [Homo sapiens]
Length = 339
Score = 32.3 bits (72), Expect = 0.78
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 242 PFILIQSTKRVKANI-EFLRSTFNL-NSEELLVLICGPGAEILDLSNDYARRS------- 292
P ++IQ+ + K NI E +R + L SE+ +LI ++++ + R+
Sbjct: 161 PGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEK 220
Query: 293 YANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDC 334
A + E + E+E +K + D FLA +K +C
Sbjct: 221 VAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKAKADAEC 262
>gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]
Length = 1812
Score = 31.2 bits (69), Expect = 1.7
Identities = 34/169 (20%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 192 CLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKR 251
CL L N+ +++ L + M+ FL L H ++ + KN L KR
Sbjct: 1329 CLLATLANSESSYNCLLTCVRTMM-FLAEHDYGLFH------LKSSLRKNSSALHSLLKR 1381
Query: 252 VKAN------------IEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEK 299
V + +EF+R N ++ + CG ++++ + R+ + +
Sbjct: 1382 VVSTFSKDTGELASSFLEFMRQILNSDT----IGCCGDDNGLMEVEGAHTSRTMSINAAE 1437
Query: 300 LFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIEN 348
L L ++EE + + + + L K +D +D L++ + + Q++E+
Sbjct: 1438 LKQLLQSKEESPENLFLELEKLVLEHSKDDDNLDSLLDSVVGLKQMLES 1486
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 30.4 bits (67), Expect = 2.9
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 307 EEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKEL 366
+E+V+K ++ + I + + F+DKID ++E I + + P + + + +K +I E
Sbjct: 3973 KEDVKKRAVALDEAISQSTQ-FHDKIDQILESLERIVERLRQPPSISAEVEKIKEQISEN 4031
Query: 367 VNAGCNLSTL 376
N ++ L
Sbjct: 4032 KNVSVDMEKL 4041
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 30.4 bits (67), Expect = 2.9
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 307 EEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKEL 366
+E+V+K ++ + I + + F+DKID ++E I + + P + + + +K +I E
Sbjct: 3984 KEDVKKRAVALDEAISQSTQ-FHDKIDQILESLERIVERLRQPPSISAEVEKIKEQISEN 4042
Query: 367 VNAGCNLSTL 376
N ++ L
Sbjct: 4043 KNVSVDMEKL 4052
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 30.4 bits (67), Expect = 2.9
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 307 EEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKEL 366
+E+V+K ++ + I + + F+DKID ++E I + + P + + + +K +I E
Sbjct: 4122 KEDVKKRAVALDEAISQSTQ-FHDKIDQILESLERIVERLRQPPSISAEVEKIKEQISEN 4180
Query: 367 VNAGCNLSTL 376
N ++ L
Sbjct: 4181 KNVSVDMEKL 4190
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 30.4 bits (67), Expect = 2.9
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 307 EEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKEL 366
+E+V+K ++ + I + + F+DKID ++E I + + P + + + +K +I E
Sbjct: 3944 KEDVKKRAVALDEAISQSTQ-FHDKIDQILESLERIVERLRQPPSISAEVEKIKEQISEN 4002
Query: 367 VNAGCNLSTL 376
N ++ L
Sbjct: 4003 KNVSVDMEKL 4012
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 30.4 bits (67), Expect = 2.9
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 307 EEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKEL 366
+E+V+K ++ + I + + F+DKID ++E I + + P + + + +K +I E
Sbjct: 3618 KEDVKKRAVALDEAISQSTQ-FHDKIDQILESLERIVERLRQPPSISAEVEKIKEQISEN 3676
Query: 367 VNAGCNLSTL 376
N ++ L
Sbjct: 3677 KNVSVDMEKL 3686
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 29.6 bits (65), Expect = 5.0
Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 26/281 (9%)
Query: 144 DLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLC----RLLTN 199
+L K VT D++I +++E + + IK L ++ T+K C +L +
Sbjct: 1087 ELQEKNVTLDVQIQHVVEGKRALSELTQGVTCYKAKIKELETILETQKVECSHSAKLEQD 1146
Query: 200 APRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILI----QSTKRVKAN 255
S L L + + EF + S+ + + V+++ K + Q K +
Sbjct: 1147 ILEKESIILKLERNLKEFQEHLQDSVKNTKDLN-VKELKLKEEITQLTNNLQDMKHLLQL 1205
Query: 256 IEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRS--YANIKEKLFSLGCTEEEVQKF 313
E T +E+L + A +L D R+ YA++KEKL ++VQK
Sbjct: 1206 KEEEEETNRQETEKLKEELSASSARTQNLKADLQRKEEDYADLKEKLTDAKKQIKQVQKE 1265
Query: 314 VLSYPDVIFLAEKKFND----KIDCLMEENI---SISQIIE--NPRVLDSSISTLKSRIK 364
V D L K N+ K C E ++ +I Q+ E N + ++ +I + K
Sbjct: 1266 VSVMRDEDKLLRIKINELEKKKNQCSQELDMKQRTIQQLKEQLNNQKVEEAIQQYERACK 1325
Query: 365 ELVNAGCNLSTLNITLLSWSKKR------YEAKLKKLSRFA 399
+L + + +TL + + EAKL+++ R A
Sbjct: 1326 DLNVKEKIIEDMRMTLEEQEQTQVEQDQVLEAKLEEVERLA 1366
>gi|38348356 testis expressed 9 [Homo sapiens]
Length = 391
Score = 29.6 bits (65), Expect = 5.0
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 253 KANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQK 312
+A I FL++ ++ EEL ++C + ++ N + N +E T Q
Sbjct: 191 EAQIRFLKAKLHVMQEELDNVVCECNKKEDEIQN--LKSQVKNFEEDFMRQQRTINMQQS 248
Query: 313 FVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVN 368
V Y + A KK+ D L ++ S+ + +EN R L ++ +S + +N
Sbjct: 249 QVEKYKTLFEEANKKY----DGLQQQLSSVERELENKRRLQKQAASSQSATEVRLN 300
>gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member 11
[Homo sapiens]
Length = 1321
Score = 29.3 bits (64), Expect = 6.6
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 244 ILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSL 303
++I K N++FLRS + S+E ++ C I+D + Y + E++ +
Sbjct: 1137 VMIDGHDSKKVNVQFLRSNIGIVSQEPVLFAC----SIMD-NIKYGDNTKEIPMERVIA- 1190
Query: 304 GCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQ-IIENPRV--LDSSISTLK 360
+ ++ FV+S P+ ++ ++ I+I++ I+ +P++ LD + S L
Sbjct: 1191 AAKQAQLHDFVMSLPEKYETNVGSQGSQLSRGEKQRIAIARAIVRDPKILLLDEATSALD 1250
Query: 361 SRIKELV 367
+ ++ V
Sbjct: 1251 TESEKTV 1257
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 29.3 bits (64), Expect = 6.6
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 308 EEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVL-DSSISTLKSRIKEL 366
EE+Q+ +L + L E ++I CL E + + E+ L ++ S L+ +L
Sbjct: 1784 EEIQQQILQQKHSMILLE----NQIGCLTPELSELKKQYESVSDLFNTKKSVLQDHFSKL 1839
Query: 367 VNAGCN-----LSTLNITLL-----SWSKKRYEAKLKKLSRF 398
+N C S + + L S +KK E KL+KLS F
Sbjct: 1840 LNDQCKNFNDWFSNIKVNLKECFESSETKKSVEQKLQKLSDF 1881
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 29.3 bits (64), Expect = 6.6
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 308 EEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVL-DSSISTLKSRIKEL 366
EE+Q+ +L + L E ++I CL E + + E+ L ++ S L+ +L
Sbjct: 1784 EEIQQQILQQKHSMILLE----NQIGCLTPELSELKKQYESVSDLFNTKKSVLQDHFSKL 1839
Query: 367 VNAGCN-----LSTLNITLL-----SWSKKRYEAKLKKLSRF 398
+N C S + + L S +KK E KL+KLS F
Sbjct: 1840 LNDQCKNFNDWFSNIKVNLKECFESSETKKSVEQKLQKLSDF 1881
>gi|222446620 hypothetical protein LOC342346 [Homo sapiens]
Length = 1141
Score = 28.9 bits (63), Expect = 8.6
Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 19/147 (12%)
Query: 230 PADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYA 289
P D R + + I K EF + + NLN + L L G L + D
Sbjct: 676 PEDKKRAVKYSMSHIAQIPVKHDSLKEEFAQLSCNLN-QRLSYLANMGGPSSLGTTVDIL 734
Query: 290 RRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENP 349
++ ++++ EEE+++ + ++I+ + + I++ + +EN
Sbjct: 735 QKKIGSLQKSRLK----EEELERI--------------WGNQIEMMKDRYITLDKAVENL 776
Query: 350 RVLDSSISTLKSRIKELVNAGCNLSTL 376
++ TL+++IK L N ST+
Sbjct: 777 QIRMDEFKTLQAQIKRLEMNKVNKSTM 803
>gi|226246608 RNA polymerase II associated protein 2 [Homo sapiens]
Length = 612
Score = 28.9 bits (63), Expect = 8.6
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 320 VIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVNAGCNLSTLNIT 379
V+ + E+ + K+D E++ + ++ SS STL R+K N+ S IT
Sbjct: 267 VVDVTEQLGDCKLDS-QEKDATCELPLQKVNTQSSSNSTLPERLKASENSESEYSRSEIT 325
Query: 380 LLSWSKKRYEAKLKKLSR 397
L+ SKK E +K ++
Sbjct: 326 LVGISKKSAEHFKRKFAK 343
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 28.9 bits (63), Expect = 8.6
Identities = 18/79 (22%), Positives = 30/79 (37%)
Query: 290 RRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENP 349
++ Y +KE+ C + E +K + + K N CL + I + E
Sbjct: 606 KKEYEELKEEKTLFSCWKSENEKLLTQMESEKENLQSKINHLETCLKTQQIKSHEYNERV 665
Query: 350 RVLDSSISTLKSRIKELVN 368
R L+ L I+ L N
Sbjct: 666 RTLEMDRENLSVEIRNLHN 684
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,477,692
Number of Sequences: 37866
Number of extensions: 535428
Number of successful extensions: 1325
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 33
length of query: 399
length of database: 18,247,518
effective HSP length: 104
effective length of query: 295
effective length of database: 14,309,454
effective search space: 4221288930
effective search space used: 4221288930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.