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Search of human proteins with 58743369
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58743369 hypothetical protein LOC139231 [Homo sapiens]
(388 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58743369 hypothetical protein LOC139231 [Homo sapiens] 774 0.0
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 53 4e-07
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 51 2e-06
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 48 2e-05
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 47 2e-05
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 46 5e-05
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 46 5e-05
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 46 5e-05
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 46 5e-05
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 46 7e-05
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 46 7e-05
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 45 9e-05
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 45 9e-05
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 45 9e-05
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 45 9e-05
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 45 1e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 45 1e-04
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s... 44 2e-04
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 43 4e-04
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 42 7e-04
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 42 7e-04
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 42 7e-04
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 42 0.001
gi|55741677 SET domain containing 1A [Homo sapiens] 41 0.002
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 41 0.002
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 40 0.004
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 40 0.004
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 40 0.004
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 40 0.004
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 40 0.004
>gi|58743369 hypothetical protein LOC139231 [Homo sapiens]
Length = 388
Score = 774 bits (1998), Expect = 0.0
Identities = 388/388 (100%), Positives = 388/388 (100%)
Query: 1 MSDEASAITSYEKFLTPEEPFPLLGPPRGVGTCPSEEPGCLDISDFGCQLSSCHRTDPLH 60
MSDEASAITSYEKFLTPEEPFPLLGPPRGVGTCPSEEPGCLDISDFGCQLSSCHRTDPLH
Sbjct: 1 MSDEASAITSYEKFLTPEEPFPLLGPPRGVGTCPSEEPGCLDISDFGCQLSSCHRTDPLH 60
Query: 61 RFHTNRWNLTSCGTSVASSEGSEELFSSVSVGDQDDCYSLLDDQDFTSFDLFPEGSVCSD 120
RFHTNRWNLTSCGTSVASSEGSEELFSSVSVGDQDDCYSLLDDQDFTSFDLFPEGSVCSD
Sbjct: 61 RFHTNRWNLTSCGTSVASSEGSEELFSSVSVGDQDDCYSLLDDQDFTSFDLFPEGSVCSD 120
Query: 121 VSSSISTYWDWSDSEFEWQLPGSDIASGSDVLSDVIPSIPSSPCLLPKKKNKHRNLDELP 180
VSSSISTYWDWSDSEFEWQLPGSDIASGSDVLSDVIPSIPSSPCLLPKKKNKHRNLDELP
Sbjct: 121 VSSSISTYWDWSDSEFEWQLPGSDIASGSDVLSDVIPSIPSSPCLLPKKKNKHRNLDELP 180
Query: 181 WSAMTNDEQVEYIEYLSRKVSTEMGLREQLDIIKIIDPSAQISPTDSEFIIELNCLTDEK 240
WSAMTNDEQVEYIEYLSRKVSTEMGLREQLDIIKIIDPSAQISPTDSEFIIELNCLTDEK
Sbjct: 181 WSAMTNDEQVEYIEYLSRKVSTEMGLREQLDIIKIIDPSAQISPTDSEFIIELNCLTDEK 240
Query: 241 LKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSV 300
LKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSV
Sbjct: 241 LKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSV 300
Query: 301 GNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKEQRQARKER 360
GNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKEQRQARKER
Sbjct: 301 GNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKEQRQARKER 360
Query: 361 LSGLFLNEEVLSLKVTEEDHEADVDVLM 388
LSGLFLNEEVLSLKVTEEDHEADVDVLM
Sbjct: 361 LSGLFLNEEVLSLKVTEEDHEADVDVLM 388
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 53.1 bits (126), Expect = 4e-07
Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 213 IKIIDPSAQIS-------PTDSEFIIELNCLTDEKLKQVRNYIKEHSPRQRP-AREAWKR 264
+ ++ P+ Q++ P +F +E LT+ ++ V E + + +R +
Sbjct: 507 LAVLQPTPQVTQEQGHLLPERKDFPVESVKLTEVPVEPVLTVHPESKSKTKTRSRSRGRA 566
Query: 265 SNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHS-DSNLSAS 323
N + S S S +S+S+SSS++S S+SSSGSS S+S+SS++ S + S DS+ S S
Sbjct: 567 RNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTS 626
Query: 324 AAERIRDSKK---RSKQRKLQQKAFRKRQ 349
++ R + ++ RK ++ RKR+
Sbjct: 627 SSSESRSRSRGRGHNRDRKHRRSVDRKRR 655
Score = 45.1 bits (105), Expect = 1e-04
Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 254 RQRPAREAWKRSNFSCASTSGVSGASASASSS-SASMVSSASSSGSSVGNSASNSSANMS 312
R + ++ + S+ S +S+S S +S S+SSS S+S SS+SSS S+ G+S+ +SS++ S
Sbjct: 567 RNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTS 626
Query: 313 RAHSDSNLSASAAERIRDSK-KRSKQRKLQQKAFRKRQLKEQR 354
+ S+S + RD K +RS RK + + +R K +
Sbjct: 627 -SSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSK 668
Score = 39.3 bits (90), Expect = 0.006
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 265 SNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASA 324
S+ +S+SG S + +S+SSSS++ SS+ S SS +S+ + S + R H+ +
Sbjct: 590 SSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRS 649
Query: 325 AERIRDSKKRSKQRKLQQKAFRKRQLK--EQRQARKER 360
+R R ++ K R K + + +R +R
Sbjct: 650 VDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDR 687
Score = 35.4 bits (80), Expect = 0.088
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 36/132 (27%)
Query: 265 SNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHS-------- 316
S+ S +S+SG S +S S+SS S+S SS++S SS +S+S SS++ SR+ S
Sbjct: 584 SSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRD 643
Query: 317 ----------------------------DSNLSASAAERIRDSKKRSKQRKLQQKAFRKR 348
+ S + R +KRS + R
Sbjct: 644 RKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSR 703
Query: 349 QLKEQRQARKER 360
++++ RK++
Sbjct: 704 SERDRKSDRKDK 715
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 51.2 bits (121), Expect = 2e-06
Identities = 31/70 (44%), Positives = 46/70 (65%)
Query: 266 NFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAA 325
N S AS+ S AS+S+SSSS+S SS+SSS SS +S+S+SS++ S + S S+ S+S++
Sbjct: 2601 NCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2660
Query: 326 ERIRDSKKRS 335
S S
Sbjct: 2661 SSSSSSSSSS 2670
Score = 50.8 bits (120), Expect = 2e-06
Identities = 34/96 (35%), Positives = 54/96 (56%)
Query: 252 SPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANM 311
SP + + S+ S +S+S S +S+S+SSSS+S SS+SSS SS +S+S+SS++
Sbjct: 2611 SPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Query: 312 SRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRK 347
S DS+ S+ + S Q L KA ++
Sbjct: 2671 STTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQ 2706
Score = 49.7 bits (117), Expect = 5e-06
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 258 AREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSD 317
+R A S+ S +S+S S +S+S+SSSS+S SS+SSS SS +S+S+SS++ S + S
Sbjct: 2607 SRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2666
Query: 318 SNLSASAAE 326
S+ S++ E
Sbjct: 2667 SSSSSTTDE 2675
Score = 48.9 bits (115), Expect = 8e-06
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 245 RNYIKEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSA 304
RN S PA + S+ S +S+S S +S+S+SSSS+S SS+SSS SS +S+
Sbjct: 2600 RNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659
Query: 305 SNSSANMSRAHSDSNLSASAA 325
S+SS++ S + S ++ +S +
Sbjct: 2660 SSSSSSSSSSSSTTDEDSSCS 2680
Score = 48.9 bits (115), Expect = 8e-06
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 256 RPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAH 315
R A R+ +S+S S +S+S+SSSS+S SS+SSS SS +S+S+SS++ S +
Sbjct: 2600 RNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659
Query: 316 SDSNLSASAAERIRD 330
S S+ S+S++ D
Sbjct: 2660 SSSSSSSSSSSSTTD 2674
Score = 45.8 bits (107), Expect = 7e-05
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 268 SCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAER 327
S + S S +S+S+SSSS+S SS+SSS SS +S+S+SS++ S + S S+ S+S++
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665
Query: 328 IRDSKKRSKQ 337
S + +
Sbjct: 2666 SSSSSSTTDE 2675
Score = 43.9 bits (102), Expect = 2e-04
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 265 SNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASA 324
S+ S +S+S S +S+S+SSSS+S SS+SSS SS +S+S+SS + S+ A+
Sbjct: 2628 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAP 2687
Query: 325 AERIRDSKKRSKQRKLQQKAFRKR 348
A S + + K ++A + R
Sbjct: 2688 APTAGPSAQAALPTKATKQAGKAR 2711
Score = 39.7 bits (91), Expect = 0.005
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 260 EAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSN 319
E K + C T G + ++AS+ ++S + SS+SSS SS +S+S+SS++ S + S S+
Sbjct: 2586 EGDKNGDGGCG-TGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2644
Query: 320 LSASAAERIRDSKKRS 335
S+S++ S S
Sbjct: 2645 SSSSSSSSSSSSSSSS 2660
Score = 38.1 bits (87), Expect = 0.014
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 265 SNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASA 324
S+ S +S+S S +S+S+SSSS+S SS+SSS SS + +SS + + + + +
Sbjct: 2635 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPS 2694
Query: 325 AERIRDSKKRSKQRKLQQKA 344
A+ +K + K + A
Sbjct: 2695 AQAALPTKATKQAGKARPSA 2714
Score = 36.6 bits (83), Expect = 0.040
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 31/104 (29%)
Query: 263 KRSNFSCASTSGVSGASASASSS-------------------------------SASMVS 291
+ S S +S+SG S +S+S+SSS +AS S
Sbjct: 2555 EESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPAS 2614
Query: 292 SASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRS 335
S+SSS SS +S+S+SS++ S + S S+ S+S++ S S
Sbjct: 2615 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2658
Score = 32.0 bits (71), Expect = 0.97
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 270 ASTSGVSGASASASSSSASMVSSASSSGS----------------SVGNSASNSSANMSR 313
A G + +S+SSSS S SS+SSS S G N SA SR
Sbjct: 2549 AEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSR 2608
Query: 314 AHSDSNLSASAAERIRDSKKRS 335
A S ++ S+S++ S S
Sbjct: 2609 AASPASSSSSSSSSSSSSSSSS 2630
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 47.8 bits (112), Expect = 2e-05
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 25/167 (14%)
Query: 218 PSAQISPTDSEFIIELNCLT----DEKLKQVRNYIKEHSPRQRPAREAWK----RSNFSC 269
PS+ +SP S ++N T K + +R Y K P+ + W+ R++ S
Sbjct: 1372 PSSLLSPEASPCRNDMNTRTPPEPSAKQRSMRCYRKACRSAS-PSSQGWQGRRGRNSRSV 1430
Query: 270 AS----TSGVSGASASASSSSASMV------------SSASSSGSSVGNSASNSSANMSR 313
+S TS S +S+S+SSSS S SS SSSG S S+S+SS++ S
Sbjct: 1431 SSGSNRTSEASSSSSSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSS 1490
Query: 314 AHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKEQRQARKER 360
+ S S+ S+ + R ++RS +R+ + QR +KER
Sbjct: 1491 SSSSSSSSSRSRSRSPSPRRRSDRRRRYSSYRSHDHYQRQRVLQKER 1537
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 47.4 bits (111), Expect = 2e-05
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 17/110 (15%)
Query: 257 PAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAH- 315
P R S+ S +S+S S +S+S+SSSS+S SS+SSS SS S+S+SS + S+ H
Sbjct: 142 PNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---SSSSSSTSFSKPHK 198
Query: 316 ----------SDSNLSASA-AERIRDSKKRSKQRKLQQKAFRKRQLKEQR 354
DS SA E RD K SK+ + K + LKE++
Sbjct: 199 LMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPK--ENKPLKEEK 246
Score = 47.4 bits (111), Expect = 2e-05
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 272 TSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDS 331
TS S +S+S+SSSS+S SS+SSS SS +S+S+SS++ S + S S E
Sbjct: 148 TSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKP 207
Query: 332 KKRSKQRKLQQKAFRKRQLKEQRQARKERLSGLFLNEEVLSLKV 375
K S++ K K + K +++ K+ L EE + K+
Sbjct: 208 SKDSREHKSAFKEPSRDHNKSSKESSKKPKENKPLKEEKIVPKM 251
Score = 44.3 bits (103), Expect = 2e-04
Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 260 EAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSN 319
E ++R S ++S+SSSS+S SS+SSS SS +S+S+SS++ S + S S+
Sbjct: 129 EDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188
Query: 320 LSASAA---ERIRDSKKRSKQRKLQQKAFRKRQLKEQRQARKE 359
S S + + +++ K++ + + K+ K ++ ++ KE
Sbjct: 189 SSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKE 231
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 46.2 bits (108), Expect = 5e-05
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 237 TDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVS----GASASASSSSASMVSS 292
T E ++ R K R + + RS S S+SG S +S S+SSS++S S
Sbjct: 49 TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 293 ASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKE 352
+S+S SS +S+S S + R H + S S ++ + +K K+R K + +
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRL 168
Query: 353 QRQARKERLSGLF 365
R K+ + +F
Sbjct: 169 TRNVTKDHIMEIF 181
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 46.2 bits (108), Expect = 5e-05
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 237 TDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVS----GASASASSSSASMVSS 292
T E ++ R K R + + RS S S+SG S +S S+SSS++S S
Sbjct: 49 TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 293 ASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKE 352
+S+S SS +S+S S + R H + S S ++ + +K K+R K + +
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRL 168
Query: 353 QRQARKERLSGLF 365
R K+ + +F
Sbjct: 169 TRNVTKDHIMEIF 181
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 46.2 bits (108), Expect = 5e-05
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 237 TDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVS----GASASASSSSASMVSS 292
T E ++ R K R + + RS S S+SG S +S S+SSS++S S
Sbjct: 49 TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 293 ASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKE 352
+S+S SS +S+S S + R H + S S ++ + +K K+R K + +
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRL 168
Query: 353 QRQARKERLSGLF 365
R K+ + +F
Sbjct: 169 TRNVTKDHIMEIF 181
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 46.2 bits (108), Expect = 5e-05
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 237 TDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVS----GASASASSSSASMVSS 292
T E ++ R K R + + RS S S+SG S +S S+SSS++S S
Sbjct: 49 TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 293 ASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKE 352
+S+S SS +S+S S + R H + S S ++ + +K K+R K + +
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRL 168
Query: 353 QRQARKERLSGLF 365
R K+ + +F
Sbjct: 169 TRNVTKDHIMEIF 181
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 45.8 bits (107), Expect = 7e-05
Identities = 43/182 (23%), Positives = 94/182 (51%), Gaps = 18/182 (9%)
Query: 184 MTNDEQVEYIEYLSRKVSTEMG--LREQLDIIKIIDPSAQISPTDSEFIIELNCLTDEKL 241
+ +D+Q+E + + +V+ EM + ++ + + +++ D + + E T +
Sbjct: 435 LLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEARE----ADGDVVNEKK-RTPNET 489
Query: 242 KQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSA-SSSGSSV 300
V KEH +++ R S +S+SG S +++ SS+S+++ SS+ SSS S
Sbjct: 490 TSVLEPKKEHKEKEKQGRSR------SGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSS 543
Query: 301 GNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKR-QLKEQRQARKE 359
S+ +SS + HS S S + R S+ RS R+++ ++ R R +++++R++ +
Sbjct: 544 RTSSRSSSPKRKKRHSRSR---SPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRN 600
Query: 360 RL 361
+
Sbjct: 601 SI 602
Score = 33.9 bits (76), Expect = 0.26
Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 20/156 (12%)
Query: 239 EKLKQVRNYIKEHSPRQR-PAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSG 297
++ + RN I+ R R P+RE +R + S + + AS S S +
Sbjct: 593 DRRRSNRNSIERERRRNRSPSRE--RRRSRSRSRDRRTNRASRSRSRDRRKIDDQR---- 646
Query: 298 SSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKEQ---- 353
GN + NS + A + +D KK+ K+R+ +Q +++Q +E+
Sbjct: 647 ---GNLSGNSHKHKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFK 703
Query: 354 ------RQARKERLSGLFLNEEVLSLKVTEEDHEAD 383
R RK F +S+K+ D D
Sbjct: 704 FSSQDDRLKRKRESERTFSRSGSISVKIIRHDSRQD 739
Score = 30.4 bits (67), Expect = 2.8
Identities = 21/58 (36%), Positives = 26/58 (44%)
Query: 279 SASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSK 336
S S S +S SS+ S GSS A + SR+ S S A R SK RS+
Sbjct: 748 SKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVEKSQRSGKKASRKHKSKSRSR 805
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 45.8 bits (107), Expect = 7e-05
Identities = 43/182 (23%), Positives = 94/182 (51%), Gaps = 18/182 (9%)
Query: 184 MTNDEQVEYIEYLSRKVSTEMG--LREQLDIIKIIDPSAQISPTDSEFIIELNCLTDEKL 241
+ +D+Q+E + + +V+ EM + ++ + + +++ D + + E T +
Sbjct: 435 LLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEARE----ADGDVVNEKK-RTPNET 489
Query: 242 KQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSA-SSSGSSV 300
V KEH +++ R S +S+SG S +++ SS+S+++ SS+ SSS S
Sbjct: 490 TSVLEPKKEHKEKEKQGRSR------SGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSS 543
Query: 301 GNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKR-QLKEQRQARKE 359
S+ +SS + HS S S + R S+ RS R+++ ++ R R +++++R++ +
Sbjct: 544 RTSSRSSSPKRKKRHSRSR---SPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRN 600
Query: 360 RL 361
+
Sbjct: 601 SI 602
Score = 33.9 bits (76), Expect = 0.26
Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 20/156 (12%)
Query: 239 EKLKQVRNYIKEHSPRQR-PAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSG 297
++ + RN I+ R R P+RE +R + S + + AS S S +
Sbjct: 593 DRRRSNRNSIERERRRNRSPSRE--RRRSRSRSRDRRTNRASRSRSRDRRKIDDQR---- 646
Query: 298 SSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKEQ---- 353
GN + NS + A + +D KK+ K+R+ +Q +++Q +E+
Sbjct: 647 ---GNLSGNSHKHKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFK 703
Query: 354 ------RQARKERLSGLFLNEEVLSLKVTEEDHEAD 383
R RK F +S+K+ D D
Sbjct: 704 FSSQDDRLKRKRESERTFSRSGSISVKIIRHDSRQD 739
Score = 30.4 bits (67), Expect = 2.8
Identities = 21/58 (36%), Positives = 26/58 (44%)
Query: 279 SASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSK 336
S S S +S SS+ S GSS A + SR+ S S A R SK RS+
Sbjct: 748 SKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVEKSQRSGKKASRKHKSKSRSR 805
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 45.4 bits (106), Expect = 9e-05
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 254 RQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSR 313
R+R + + S S +S++ SG+S S SSS S SSASS S S S+SS
Sbjct: 63 RKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS----- 117
Query: 314 AHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQ 349
S S+ S S + R D+++RS+ + K K +
Sbjct: 118 --SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 44.3 bits (103), Expect = 2e-04
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 237 TDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVS----GASASASSSSASMVSS 292
T E ++ R K + + RS S S+SG S +S S+SSS++S S
Sbjct: 49 TKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 293 ASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKE 352
+S+S SS +S+S S + R H + S S ++ + +K K+R K + +
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRL 168
Query: 353 QRQARKERLSGLF 365
R K+ + +F
Sbjct: 169 TRNVTKDHIMEIF 181
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 45.4 bits (106), Expect = 9e-05
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 254 RQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSR 313
R+R + + S S +S++ SG+S S SSS S SSASS S S S+SS
Sbjct: 63 RKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS----- 117
Query: 314 AHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQ 349
S S+ S S + R D+++RS+ + K K +
Sbjct: 118 --SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 44.3 bits (103), Expect = 2e-04
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 237 TDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVS----GASASASSSSASMVSS 292
T E ++ R K + + RS S S+SG S +S S+SSS++S S
Sbjct: 49 TKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 293 ASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKE 352
+S+S SS +S+S S + R H + S S ++ + +K K+R K + +
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRL 168
Query: 353 QRQARKERLSGLF 365
R K+ + +F
Sbjct: 169 TRNVTKDHIMEIF 181
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 45.4 bits (106), Expect = 9e-05
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 254 RQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSR 313
R+R + + S S +S++ SG+S S SSS S SSASS S S S+SS
Sbjct: 63 RKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS----- 117
Query: 314 AHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQ 349
S S+ S S + R D+++RS+ + K K +
Sbjct: 118 --SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 44.3 bits (103), Expect = 2e-04
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 237 TDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVS----GASASASSSSASMVSS 292
T E ++ R K + + RS S S+SG S +S S+SSS++S S
Sbjct: 49 TKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 293 ASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKE 352
+S+S SS +S+S S + R H + S S ++ + +K K+R K + +
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRL 168
Query: 353 QRQARKERLSGLF 365
R K+ + +F
Sbjct: 169 TRNVTKDHIMEIF 181
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 45.4 bits (106), Expect = 9e-05
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 254 RQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSR 313
R+R + + S S +S++ SG+S S SSS S SSASS S S S+SS
Sbjct: 63 RKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS----- 117
Query: 314 AHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQ 349
S S+ S S + R D+++RS+ + K K +
Sbjct: 118 --SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 44.3 bits (103), Expect = 2e-04
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 237 TDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVS----GASASASSSSASMVSS 292
T E ++ R K + + RS S S+SG S +S S+SSS++S S
Sbjct: 49 TKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 293 ASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKE 352
+S+S SS +S+S S + R H + S S ++ + +K K+R K + +
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRL 168
Query: 353 QRQARKERLSGLF 365
R K+ + +F
Sbjct: 169 TRNVTKDHIMEIF 181
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 45.1 bits (105), Expect = 1e-04
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 235 CLTDEKLKQVRNYIKEHSPRQRPAR------EAWKRSNFSCASTSGVSGASASASSSSAS 288
C TD ++ R +P + R E+ S+ +S S +S+S+SSSS S
Sbjct: 2098 CETDRRMVAARTEPLTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCS 2157
Query: 289 MVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRK-LQQKAFRK 347
S SSS SS S+++SS++ S + S S+ S+S+ E D ++ K+ KA+ +
Sbjct: 2158 HSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDE 2217
Query: 348 RQLKEQRQARKERLSGLFLN 367
+ + E +N
Sbjct: 2218 ESVASLSTTQDETQDSFQMN 2237
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 44.7 bits (104), Expect = 1e-04
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 253 PRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSA 309
P PA+ + S+ S +S+S S +S+S+SSSS+S SS+SSS SS +S+S S A
Sbjct: 2596 PEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPA 2652
Score = 43.5 bits (101), Expect = 3e-04
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 248 IKEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNS 307
++E P + + +RS+ S +S+S S +S+S+SSSS+S SS+SSS SS +S+S+
Sbjct: 2590 VREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSP 2649
Query: 308 S 308
S
Sbjct: 2650 S 2650
Score = 41.6 bits (96), Expect = 0.001
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 249 KEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSS 308
KE RP + +S+S S +S+S+SSSS+S SS+SSS SS +S+S+SS
Sbjct: 2587 KEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2646
Query: 309 ANMSRA 314
++ S A
Sbjct: 2647 SSPSPA 2652
Score = 40.4 bits (93), Expect = 0.003
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 253 PRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMS 312
P PA + R T +S+SSSS+S SS+SSS SS +S+S+SS++ S
Sbjct: 2580 PSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2639
Query: 313 RAHSDSNLSASAAE 326
+ S S+ S S A+
Sbjct: 2640 SSSSSSSSSPSPAK 2653
Score = 36.2 bits (82), Expect = 0.052
Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 276 SGASASASSSSASMVSSASSSGSSVGNSASNSSAN 310
S +S+S+SSSS+S SS+SSS SS G+S+S+S +
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGS 2566
Score = 35.4 bits (80), Expect = 0.088
Identities = 21/45 (46%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 256 RPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSV 300
+PA+E + S+ S +S+S S +S+S+SSSS+S SS+ S GSS+
Sbjct: 2525 QPAKER-RSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2568
Score = 34.7 bits (78), Expect = 0.15
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 272 TSGVSGASASASSSSASMVSSASSSGSSVGNSASNS 307
+S S +S+S+SSSS+S SS+SSSGSS +S +S
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Score = 34.3 bits (77), Expect = 0.20
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 281 SASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKL 340
S+SSSS+S SS+SSS SS +S+S SS++ S S A +R+ K+
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKE--- 2588
Query: 341 QQKAFRKRQLKEQRQARKERLS 362
A R+ + E A+++R S
Sbjct: 2589 ---AVREGRPPEPTPAKRKRRS 2607
>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
sapiens]
Length = 908
Score = 43.9 bits (102), Expect = 2e-04
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 35/203 (17%)
Query: 177 DELPWSAMTNDEQVEYIEYLSRKVSTEMGLREQLDIIKIIDPSAQI-------------- 222
D LPWS + + E S ++ ++ +E + + + +A++
Sbjct: 558 DSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLP 617
Query: 223 --SPTDSEFIIE------LNCLTDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSG 274
+P ++ F I L LTDE + ++N +P+ A++ N S S+S
Sbjct: 618 RDNPRNTRFAINFFTSIGLGGLTDELREHLKN-----TPKVIVAQKPDVEQNKSSPSSS- 671
Query: 275 VSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKR 334
+SAS+SS S S S + SS SS +S+ S ++ +HS + SA+ + K R
Sbjct: 672 ---SSASSSSESDSSDSDSDSSDSSSESSSEESDSSSISSHSSA--SANDVRKKGHGKTR 726
Query: 335 SKQ--RKLQQKAFRKRQLKEQRQ 355
SK+ + ++ + R+ KE+RQ
Sbjct: 727 SKEVDKLIRNQQTNDRKQKERRQ 749
Score = 37.4 bits (85), Expect = 0.023
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 281 SASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNL----SASAAERIRDSKKRSK 336
S+ SSS+S SS+ S S + +S+SS+ S SDS+ S+++A +R
Sbjct: 666 SSPSSSSSASSSSESDSSDSDSDSSDSSSESSSEESDSSSISSHSSASANDVRKKGHGKT 725
Query: 337 QRKLQQKAFRKRQLKEQRQARKERLSG 363
+ K K R +Q +++Q + + G
Sbjct: 726 RSKEVDKLIRNQQTNDRKQKERRQEHG 752
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 43.1 bits (100), Expect = 4e-04
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 217 DPSAQISPTDSEFIIELNCL----TDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCAST 272
DPS + ++ E E+ L T +K K +R + +++ R K+ F + +
Sbjct: 194 DPSQEYVASEGEEDPEVEFLKSLTTKQKQKLLRKLDRLEKKKKKKDR---KKKKFQKSRS 250
Query: 273 SGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSK 332
S+S+SSSS+S SS +S SS + ++N + R N + + K
Sbjct: 251 KHKKHKSSSSSSSSSSSSSSTETSESSSESESNNKEKKIQRKKRKKNKCSGHNNSDSEEK 310
Query: 333 KRSKQRKLQQKAFRKRQLKEQRQAR 357
+SK+RKL ++ +E+ + +
Sbjct: 311 DKSKKRKLHEELSSSHHNREKAKEK 335
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 42.4 bits (98), Expect = 7e-04
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 271 STSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRD 330
S+SG S +S+S+SSSS+S SS+S S SS G S+ SS ++ S+ S S+ R R+
Sbjct: 453 SSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSSGSSGAR-RE 511
Query: 331 SKKRS 335
+ R+
Sbjct: 512 GRHRA 516
Score = 38.1 bits (87), Expect = 0.014
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 268 SCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSD 317
S + G G S+S SSSS+S SS+SSS SS + +S+S S SD
Sbjct: 442 SRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSETSSD 491
Score = 37.4 bits (85), Expect = 0.023
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 271 STSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRD 330
S G SG +S+ SSS+S SS+SSS SS +S S+SS S + + S+L + E
Sbjct: 444 SGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGES-SETSSDLFEGSNEGSSS 502
Query: 331 SKKRSKQRKLQQKA 344
S +R+ + +A
Sbjct: 503 SGSSGARREGRHRA 516
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 42.4 bits (98), Expect = 7e-04
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 271 STSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRD 330
S+SG S +S+S+SSSS+S SS+S S SS G S+ SS ++ S+ S S+ R R+
Sbjct: 453 SSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSSGSSGAR-RE 511
Query: 331 SKKRS 335
+ R+
Sbjct: 512 GRHRA 516
Score = 38.1 bits (87), Expect = 0.014
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 268 SCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSD 317
S + G G S+S SSSS+S SS+SSS SS + +S+S S SD
Sbjct: 442 SRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSETSSD 491
Score = 37.4 bits (85), Expect = 0.023
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 271 STSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRD 330
S G SG +S+ SSS+S SS+SSS SS +S S+SS S + + S+L + E
Sbjct: 444 SGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGES-SETSSDLFEGSNEGSSS 502
Query: 331 SKKRSKQRKLQQKA 344
S +R+ + +A
Sbjct: 503 SGSSGARREGRHRA 516
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 42.4 bits (98), Expect = 7e-04
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 249 KEHSPRQRPAREAWKRSNF------SCASTSGVSGASASASSSSASMVSSASSSGSSVGN 302
+E ++RPAR +R S +S SG S S S S SS S VSSA+SS SS +
Sbjct: 666 REARRKERPARTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHS 725
Query: 303 -SASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKEQ 353
+ + A+++ S ++ + A + R K +SK+ ++ RKR Q
Sbjct: 726 VDSEDMYADLASPVSSASSRSPAPAQTRKEKGKSKKEDGVKEEKRKRDSSTQ 777
Score = 35.4 bits (80), Expect = 0.088
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 259 REAWKRSNFSCASTSGVSGASA--------SASSSSASMVSSASSSGSSVGNSASNSSAN 310
++ W+RS S GVS + + SASS+SAS S +SS SS S S SS +
Sbjct: 516 KDPWRRSK-SPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSY--SGSGSSRS 572
Query: 311 MSRAHSDSNLSASAAERIRDSKKRSKQR 338
SR+ S S+ S+ ++ S RS+ R
Sbjct: 573 RSRSSSYSSYSSRSSRHSSFSGSRSRSR 600
Score = 31.2 bits (69), Expect = 1.7
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 271 STSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRD 330
S S S +++S SSS +S S + SS S +S+ +S ++ S HS + S S +
Sbjct: 545 SASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSS 604
Query: 331 SKKRS 335
S S
Sbjct: 605 SPSPS 609
Score = 28.9 bits (63), Expect = 8.3
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 257 PAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHS 316
P+R +R + ++++ S S+S SSS + SS S S SS +S S+ S+ S
Sbjct: 535 PSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSG 594
Query: 317 DSNLSASAAERIRDSKKRSKQR 338
+ S S + S S R
Sbjct: 595 SRSRSRSFSSSPSPSPTPSPHR 616
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 42.0 bits (97), Expect = 0.001
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 238 DEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSG 297
D ++ N K + + +R + RS+ +S S S S S SS+S S + SS
Sbjct: 186 DASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS 245
Query: 298 SSVGNSASNSSANMSRAHSDSNL--------SASAAERIRDSKKRSKQRKLQQKAFRKRQ 349
S + S + SR+H S+ S+S+ ER ++KRS+ R +KR+
Sbjct: 246 RERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPER---NRKRSRSRSSSSGDRKKRR 302
Query: 350 LKEQRQARKERLS 362
+ + R+ R S
Sbjct: 303 TRSRSPERRHRSS 315
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 40.8 bits (94), Expect = 0.002
Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 259 REAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDS 318
++A+ R +FS AS++ + ++A A++++A+ SSASSS S +S+S+SS++ SD+
Sbjct: 306 QDAFSRRHFS-ASSASTTASTAIAATTAATASSSASSSSLSSSSSSSSSSSSSQFRSSDA 364
Query: 319 NLSA 322
N A
Sbjct: 365 NYPA 368
Score = 32.0 bits (71), Expect = 0.97
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 270 ASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSAN 310
A + G + +++ + SSS+S SS+SSS SS +S+S+S ++
Sbjct: 1021 ADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESS 1061
Score = 32.0 bits (71), Expect = 0.97
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 271 STSGVSGASASASSSSASMVSSASSSGSSVGNSASN 306
STS +S+S+SSSS+S SS+SSS SS +S+ +
Sbjct: 1029 STSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSED 1064
Score = 31.6 bits (70), Expect = 1.3
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 268 SCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAER 327
S S + +S+SSSS+S SS+SSS SS +S S+S + SAS R
Sbjct: 1023 SDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSASPPPR 1082
Score = 31.2 bits (69), Expect = 1.7
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 226 DSEFIIELNCLTDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSS 285
DS + + + + +Y S R A A ++ + A+T+ + +S+++SSS
Sbjct: 284 DSAYSSSTTSTSFKPRRSENSYQDAFSRRHFSASSASTTASTAIAATTAATASSSASSSS 343
Query: 286 SASMVSSASSSGSS 299
+S SS+SSS SS
Sbjct: 344 LSSSSSSSSSSSSS 357
Score = 29.3 bits (64), Expect = 6.3
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 266 NFSCASTSGVSGASASASSSSASMVSSASSSGSS 299
N S + + S +S+S+SSSS+S SS+SSS S
Sbjct: 1027 NDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSES 1060
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 40.8 bits (94), Expect = 0.002
Identities = 69/301 (22%), Positives = 111/301 (36%), Gaps = 8/301 (2%)
Query: 35 SEEPGCLDISDFGCQLSSCHRTDPLHRFHTNRWNLTSCGTSVASSEGSEELFSSVSVGDQ 94
S+ D SD S + +D ++ + +S ++ + S S + S D
Sbjct: 983 SDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDS 1042
Query: 95 DDCYSLLDDQDFTSFDLFPEGSVCSDVSSSISTYWDWSDSEFEWQLPGSDIASGSDVLSD 154
D D D ++ + S SD S S S D SDS S +S S SD
Sbjct: 1043 SDSSDSSDSSDSSNSSDSSDSSDSSDSSDS-SDSSDSSDSSESSDSSDSSNSSDSSDSSD 1101
Query: 155 VIPSIPSSPCLLPKKKNKHRNLDELPWSAMTNDEQVEYIEYLSRKVSTEMGLREQLDIIK 214
S SS + N + S+ ++D S S + D
Sbjct: 1102 SSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSD 1161
Query: 215 IIDPSAQISPTDSEFIIELNCLTDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSG 274
D S +DS + +D S + ++ S+ S +S S
Sbjct: 1162 SSDSSDSSDSSDSSDSSNSSDSSDSS-------DSSDSSDSSDSSDSSDSSDSSDSSDSS 1214
Query: 275 VSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKR 334
S S+ +S SS S S+ SS S +S+ +S+++ S SDS+ S S + DS+ +
Sbjct: 1215 DSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDSSDSTSDSNDESDSQSK 1274
Query: 335 S 335
S
Sbjct: 1275 S 1275
Score = 38.9 bits (89), Expect = 0.008
Identities = 66/265 (24%), Positives = 101/265 (38%), Gaps = 15/265 (5%)
Query: 71 SCGTSVASSEGSEELFSSVSVGDQDDCYSLLDDQDFTSFDLFPEGSVCSDVSSSISTYWD 130
S +S +S + SS S D D S D D S D + S SD S+S ++
Sbjct: 610 SSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDS-SDNSDSSDSSNSSNS--- 665
Query: 131 WSDSEFEWQLPGSDIASGSDVLSDVIPSIPSSPCLLPKKKNKHRNLDELPWSAMTNDEQV 190
SDS S +S S SD S SS + + D S +N
Sbjct: 666 -SDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSS 724
Query: 191 EYIEYLSRKVSTEMGLREQLDIIKIIDPSAQISPTDSEFIIELNCLTDEKLKQVRNYIKE 250
+ S S + D + S +DS + + +D
Sbjct: 725 DSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSS-------DSS 777
Query: 251 HSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSAN 310
S + ++ S+ S +S S S S+ +S SS S S +S+S S NS+ +S ++
Sbjct: 778 DSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNS-SDSSNSSDSSDSS 836
Query: 311 MSRAHSDSNLSASAAERIRDSKKRS 335
S SDS+ S+ ++ DS RS
Sbjct: 837 NSSDSSDSSDSSDGSD--SDSSNRS 859
Score = 38.9 bits (89), Expect = 0.008
Identities = 69/297 (23%), Positives = 113/297 (38%), Gaps = 16/297 (5%)
Query: 35 SEEPGCLDISDFGCQLSSCHRTDPLHRFHTNRWNLTSCGTSVASSEGSEELFSSVSVGDQ 94
S+ D SD S + +D +++ + + S SS+ S SS S
Sbjct: 871 SDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSS 930
Query: 95 DDCYSLLDDQDFTSFDLFPEGSVCSDVSSSISTYWDWSDSEFEWQLPGSDIASGSDVLSD 154
D+ S D +S S S SS+ S + SDS SD ++ SD SD
Sbjct: 931 DNSNS--SDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDS-SD 987
Query: 155 VIPSIPSSPCLLPKKKNKHRNLDELPWSAMTNDEQVEYIEYLSRKVSTEMGLREQLDIIK 214
S SS + + + S+ ++D S S + D
Sbjct: 988 SSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSD 1047
Query: 215 IIDPSAQISPTDSEFIIELNCLTDEKLKQVRNYIKEHSPRQRPAREAWKRSNFSCASTSG 274
D S + +DS + + +D S + ++ + S+ S +S S
Sbjct: 1048 SSDSSDSSNSSDSSDSSDSSDSSD-------------SSDSSDSSDSSESSDSSDSSNSS 1094
Query: 275 VSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDS 331
S S+ +S SS S SS SS S NS+ +S ++ S SDS+ S+ +++ S
Sbjct: 1095 DSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESS 1151
Score = 35.4 bits (80), Expect = 0.088
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 265 SNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASA 324
S+ S +S S S S+++S SS S SS +S+ S NS+ +S ++ S SDS+ S+ +
Sbjct: 903 SDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDS 962
Query: 325 AERIRDSKKRS 335
+ S S
Sbjct: 963 SNSSDSSDSNS 973
Score = 33.9 bits (76), Expect = 0.26
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 271 STSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASA 324
S SG + +S S SS S SS SS S +S SNSS++ + SDS+ S+ +
Sbjct: 540 SDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDS 593
Score = 33.1 bits (74), Expect = 0.44
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 265 SNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASA 324
SN S +S S S +S S SSS + S + SS SS +S+ +S+++ S SDS+ S+ +
Sbjct: 558 SNSSDSSDSSDSDSSDSNSSSDSDS-SDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDS 616
Query: 325 AERIRDSKKRSKQ 337
++ DSK S +
Sbjct: 617 SDS-SDSKSDSSK 628
Score = 31.2 bits (69), Expect = 1.7
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 265 SNFSCASTSGVSGASASASSSSASMVSSA-----SSSGSSVGNSASNSSANMSRAHSDSN 319
SN S +S S S S+++S SS S SS SS+ S NS+ +S ++ S SDS+
Sbjct: 821 SNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSS 880
Query: 320 LSASAAERIRDS 331
S+ + E S
Sbjct: 881 DSSDSNESSNSS 892
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 40.0 bits (92), Expect = 0.004
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 249 KEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSS 308
+ S + R + KR S TS AS S S SS SS +S+S+SS
Sbjct: 132 RSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSS 191
Query: 309 ANMSRAHSDSNLSASAAERIRDS--KKRSKQRKLQQKAFRKRQLKE 352
++ S + S S+ + +D KK+ K++KL++K K + ++
Sbjct: 192 SSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 237
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 254 RQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSR 313
R R + + K+S + S + + + S+SSS SS +S+S+SS++ S
Sbjct: 140 RGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSS 199
Query: 314 AHSDSNLSASAAERIRDSKKRSKQR-KLQQKAFRKRQLKEQRQARKE 359
+ SD KKR K + K ++K ++++LK++ + + E
Sbjct: 200 SSSDGR------------KKRGKYKDKRRKKKKKRKKLKKKGKEKAE 234
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 40.0 bits (92), Expect = 0.004
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 249 KEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSS 308
+ S + R + KR S TS AS S S SS SS +S+S+SS
Sbjct: 132 RSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSS 191
Query: 309 ANMSRAHSDSNLSASAAERIRDS--KKRSKQRKLQQKAFRKRQLKE 352
++ S + S S+ + +D KK+ K++KL++K K + ++
Sbjct: 192 SSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 237
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 254 RQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSR 313
R R + + K+S + S + + + S+SSS SS +S+S+SS++ S
Sbjct: 140 RGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSS 199
Query: 314 AHSDSNLSASAAERIRDSKKRSKQR-KLQQKAFRKRQLKEQRQARKE 359
+ SD KKR K + K ++K ++++LK++ + + E
Sbjct: 200 SSSDGR------------KKRGKYKDKRRKKKKKRKKLKKKGKEKAE 234
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 40.0 bits (92), Expect = 0.004
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 247 YIKEHSPRQRPAREAWKRSNF-------SCASTSGVSGA------SASASSSSASMVSSA 293
Y + R R +R + RS + S S+SG S + S+ + S S S SS
Sbjct: 160 YSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSR 219
Query: 294 SSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQK 343
S+S S ++ + S+++SR+ S S S+ R SK++SK R ++
Sbjct: 220 SASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKR 269
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 40.0 bits (92), Expect = 0.004
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 268 SCASTSGVSGASASASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAER 327
S ++SG S S S S++ S +SS SS G+S+ + S++ + S S ++
Sbjct: 9 SVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDT 68
Query: 328 IRDSKKRSKQRK---------------LQQKAFRKRQLKEQRQARKERLSGLFLNEEVLS 372
R++K ++K K +Q+ A K+Q ++Q+Q ++ + S +EE S
Sbjct: 69 SRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQ-QQQQQQQQHQASSNSGSEEDSS 127
Query: 373 LKVTEEDHEADV 384
+D ++V
Sbjct: 128 SSEDSDDSSSEV 139
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 40.0 bits (92), Expect = 0.004
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 24/207 (11%)
Query: 181 WSAMTNDEQVEYIEYLSRKVSTEMGLREQLDIIKIIDPSAQISPTDSEFIIELNCLTDEK 240
W T +YL+R T +++QL+ K + +EF ++N ++
Sbjct: 19 WRGPTQSVGPTIQDYLNRPRPTWEEVKKQLENKKTGSKAL------AEFEEKMNENWKKE 72
Query: 241 LKQVRNYI---KEHSPRQRPAREAWKRSNFSCASTSGVSGASASASSSSASMVSSASSSG 297
L++ R + E S ++R ++ KR SC S+S S+SSS +S SS S
Sbjct: 73 LEKSREKLLSGNESSSKKRERKK--KRKKKSCRSSS-------SSSSSDSSSSSSDSEDE 123
Query: 298 SSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQLKEQRQAR 357
N S S S+ S +E KK+ K + +K K+ R
Sbjct: 124 EKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKE------KDVRSLS 177
Query: 358 KERLSGLFLNEEVLSLKVTEEDHEADV 384
K+R ++ + S +E D+E DV
Sbjct: 178 KKRKKSYPDDKPLSSESSSESDYEEDV 204
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.125 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,262,684
Number of Sequences: 37866
Number of extensions: 736721
Number of successful extensions: 7093
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 4869
Number of HSP's gapped (non-prelim): 1504
length of query: 388
length of database: 18,247,518
effective HSP length: 104
effective length of query: 284
effective length of database: 14,309,454
effective search space: 4063884936
effective search space used: 4063884936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.