Guide to the Human Genome
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Name: C22orf9 Sequence: fasta or formatted (409aa) NCBI GI: 57863293
Description:

hypothetical protein LOC23313 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {404aa} hypothetical protein LOC23313 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         27           3
 C cysteine            1.7          7           1
 D aspartate           6.1         25           2
 E glutamate           7.1         29           2
 F phenylalanine       5.1         21           2
 G glycine             6.6         27           2
 H histidine           2.2          9           1
 I isoleucine          3.4         14           1
 K lysine              6.4         26           3
 L leucine             6.4         26           2
 M methionine          4.4         18           1
 N asparagine          3.4         14           2
 P proline             4.6         19           2
 Q glutamine           2.4         10           2
 R arginine            6.6         27           2
 S serine             10.8         44           3
 T threonine           4.6         19           1
 V valine              6.6         27           1
 W tryptophan          2.0          8           1
 Y tyrosine            2.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC23313 isoform a 
C22orf9               0.937   hypothetical protein LOC23313 isoform b 
GAS2L1                0.009   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.009   growth arrest-specific 2 like 1 isoform a 
FUK                   0.007   fucokinase 
KIAA1409              0.007   hypothetical protein LOC57578 
RICS                  0.006   Rho GTPase-activating protein isoform 1 
RICS                  0.006   Rho GTPase-activating protein isoform 2 
LOC389333             0.006   hypothetical protein LOC389333 
BUD13                 0.006   BUD13 homolog isoform 1 
NUCKS1                0.006   nuclear casein kinase and cyclin-dependent kinase su...
SYTL2                 0.005   synaptotagmin-like 2 isoform i 
MYLK                  0.005   myosin light chain kinase isoform 3A 
MYLK                  0.005   myosin light chain kinase isoform 1 
MYLK                  0.005   myosin light chain kinase isoform 3B 
MYLK                  0.005   myosin light chain kinase isoform 2 
LOC100132247          0.005   hypothetical protein LOC100132247 
LOC728888             0.005   PREDICTED: similar to acyl-CoA synthetase medium-ch...
AGPAT9                0.005   1-acylglycerol-3-phosphate O-acyltransferase 9 [Homo...
NPIPL3                0.005   nuclear pore complex interacting protein-like 3 [Ho...
NAV2                  0.005   neuron navigator 2 isoform 4 
NAV2                  0.005   neuron navigator 2 isoform 3 
NAV2                  0.005   neuron navigator 2 isoform 1 
NAV2                  0.005   neuron navigator 2 isoform 2 
PPP1R13B              0.005   apoptosis-stimulating protein of p53, 1 
SRRM2                 0.005   splicing coactivator subunit SRm300 
SENP6                 0.005   SUMO1/sentrin specific peptidase 6 isoform 2 
SENP6                 0.005   SUMO1/sentrin specific peptidase 6 isoform 1 
WRAP53                0.005   WD repeat domain 79 isoform 4 
WRAP53                0.005   WD repeat domain 79 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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