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Search of human proteins with 56961678
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56961678 speedy homolog A isoform 2 [Homo sapiens]
(286 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56961678 speedy homolog A isoform 2 [Homo sapiens] 603 e-173
gi|217416376 speedy homolog A isoform 1 [Homo sapiens] 597 e-171
gi|60498969 speedy homolog A isoform 1 [Homo sapiens] 597 e-171
gi|56912202 speedy C [Homo sapiens] 184 1e-46
gi|189303549 speedy homolog E4 [Homo sapiens] 102 4e-22
gi|239743254 PREDICTED: hypothetical protein XP_002342780 [Homo ... 94 2e-19
gi|239508929 PREDICTED: similar to Putative WBSCR19-like protein... 94 2e-19
gi|118601064 speedy homolog E3 [Homo sapiens] 89 4e-18
gi|30795188 Williams Beuren syndrome chromosome region 19 protei... 87 2e-17
gi|194595492 speedy homolog E5 [Homo sapiens] 86 3e-17
gi|239743228 PREDICTED: WBSCR19-like protein 8-like isoform 2 [H... 82 7e-16
gi|239508903 PREDICTED: WBSCR19-like protein 8-like [Homo sapiens] 82 7e-16
gi|226246595 speedy homolog E6 [Homo sapiens] 80 2e-15
gi|239743297 PREDICTED: speedy homolog E6 [Homo sapiens] 80 2e-15
gi|169170099 PREDICTED: similar to speedy homolog A [Homo sapiens] 80 2e-15
gi|239508980 PREDICTED: speedy homolog E6 (Xenopus laevis) [Homo... 80 2e-15
gi|239508919 PREDICTED: similar to speedy homolog A [Homo sapiens] 80 2e-15
gi|71979927 speedy homolog E2 [Homo sapiens] 80 2e-15
gi|239743311 PREDICTED: similar to speedy homolog A isoform 1 [H... 80 3e-15
gi|239508994 PREDICTED: similar to speedy homolog A isoform 7 [H... 80 3e-15
gi|4503759 flavin containing monooxygenase 4 [Homo sapiens] 31 1.1
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 29 5.4
gi|187829742 BCL2 binding component 3 isoform 2 [Homo sapiens] 28 7.1
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a... 28 9.2
gi|239757147 PREDICTED: similar to zinc finger protein 564 [Homo... 28 9.2
gi|239751660 PREDICTED: hypothetical protein XP_002347962 [Homo ... 28 9.2
gi|239746166 PREDICTED: hypothetical protein XP_002343682 [Homo ... 28 9.2
>gi|56961678 speedy homolog A isoform 2 [Homo sapiens]
Length = 286
Score = 603 bits (1554), Expect = e-173
Identities = 286/286 (100%), Positives = 286/286 (100%)
Query: 1 MRHNQMCCETPPTVTVYVKSGSNRSHQPKKPITLKRPICKDNWQAFEKNTHNNNKSKRPK 60
MRHNQMCCETPPTVTVYVKSGSNRSHQPKKPITLKRPICKDNWQAFEKNTHNNNKSKRPK
Sbjct: 1 MRHNQMCCETPPTVTVYVKSGSNRSHQPKKPITLKRPICKDNWQAFEKNTHNNNKSKRPK 60
Query: 61 GPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTR 120
GPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTR
Sbjct: 61 GPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTR 120
Query: 121 INFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRR 180
INFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRR
Sbjct: 121 INFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRR 180
Query: 181 CCEEVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRL 240
CCEEVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRL
Sbjct: 181 CCEEVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRL 240
Query: 241 GLSSSSSLSSHTAGVTEKHSQDSYNSLSMDIIGDPSQAYTGSEGMI 286
GLSSSSSLSSHTAGVTEKHSQDSYNSLSMDIIGDPSQAYTGSEGMI
Sbjct: 241 GLSSSSSLSSHTAGVTEKHSQDSYNSLSMDIIGDPSQAYTGSEGMI 286
>gi|217416376 speedy homolog A isoform 1 [Homo sapiens]
Length = 313
Score = 597 bits (1539), Expect = e-171
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MRHNQMCCETPPTVTVYVKSGSNRSHQPKKPITLKRPICKDNWQAFEKNTHNNNKSKRPK 60
MRHNQMCCETPPTVTVYVKSGSNRSHQPKKPITLKRPICKDNWQAFEKNTHNNNKSKRPK
Sbjct: 1 MRHNQMCCETPPTVTVYVKSGSNRSHQPKKPITLKRPICKDNWQAFEKNTHNNNKSKRPK 60
Query: 61 GPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTR 120
GPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTR
Sbjct: 61 GPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTR 120
Query: 121 INFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRR 180
INFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRR
Sbjct: 121 INFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRR 180
Query: 181 CCEEVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRL 240
CCEEVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRL
Sbjct: 181 CCEEVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRL 240
Query: 241 GLSSSSSLSSHTAGVTEKHSQDSYNSLSMDIIGDPSQAYTGSE 283
GLSSSSSLSSHTAGVTEKHSQDSYNSLSMDIIGDPSQAYTGSE
Sbjct: 241 GLSSSSSLSSHTAGVTEKHSQDSYNSLSMDIIGDPSQAYTGSE 283
>gi|60498969 speedy homolog A isoform 1 [Homo sapiens]
Length = 313
Score = 597 bits (1539), Expect = e-171
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MRHNQMCCETPPTVTVYVKSGSNRSHQPKKPITLKRPICKDNWQAFEKNTHNNNKSKRPK 60
MRHNQMCCETPPTVTVYVKSGSNRSHQPKKPITLKRPICKDNWQAFEKNTHNNNKSKRPK
Sbjct: 1 MRHNQMCCETPPTVTVYVKSGSNRSHQPKKPITLKRPICKDNWQAFEKNTHNNNKSKRPK 60
Query: 61 GPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTR 120
GPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTR
Sbjct: 61 GPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTR 120
Query: 121 INFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRR 180
INFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRR
Sbjct: 121 INFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRR 180
Query: 181 CCEEVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRL 240
CCEEVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRL
Sbjct: 181 CCEEVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRL 240
Query: 241 GLSSSSSLSSHTAGVTEKHSQDSYNSLSMDIIGDPSQAYTGSE 283
GLSSSSSLSSHTAGVTEKHSQDSYNSLSMDIIGDPSQAYTGSE
Sbjct: 241 GLSSSSSLSSHTAGVTEKHSQDSYNSLSMDIIGDPSQAYTGSE 283
>gi|56912202 speedy C [Homo sapiens]
Length = 293
Score = 184 bits (466), Expect = 1e-46
Identities = 88/166 (53%), Positives = 112/166 (67%)
Query: 67 QRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIA 126
Q Q++ AF L +D +Q+FL D C +I+DKYLLAM VYF+RA +SE+T + F+A
Sbjct: 55 QHQEVQAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLA 114
Query: 127 LYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRRCCEEVM 186
LYLAN +EED E K EIFPWALGK+W FL RD+LW R+ +RA+VSR+CCEEVM
Sbjct: 115 LYLANDMEEDLEGPKCEIFPWALGKDWCLRVGKFLHQRDKLWARMGFRAVVSRQCCEEVM 174
Query: 187 AIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCG 232
A P H+ W R+R HH G R + V+LPRGP +P CS CG
Sbjct: 175 AKEPFHWAWTRDRRPHHGGVQRVCPQVPVRLPRGPGLSPPHCSPCG 220
>gi|189303549 speedy homolog E4 [Homo sapiens]
Length = 237
Score = 102 bits (254), Expect = 4e-22
Identities = 58/147 (39%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Query: 55 KSKRPKGPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFT 114
K KR + ++ + + AF +L D ++Q FL D +++DKYLLAM YF RA
Sbjct: 92 KLKRKRASSVLPEHHE--AFNRLLGDPVVQKFLAWDKDLRVSDKYLLAMVIAYFSRAGLF 149
Query: 115 ISEHTRINFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYR 174
++ RI+FF+ALYLA+ +EED + K +IF + GKN+ + P F KLR QL + +R
Sbjct: 150 SWQYQRIHFFLALYLASDMEEDNQAPKQDIFSFLYGKNYSQR-PLFHKLRYQLLCSMRWR 208
Query: 175 AIVSRRCCEEVMAIAPTHYIWQRERSV 201
VS EE+ A P H++W R+R++
Sbjct: 209 TWVSPEEMEEIQAYDPEHWVWARDRTL 235
>gi|239743254 PREDICTED: hypothetical protein XP_002342780 [Homo
sapiens]
Length = 575
Score = 93.6 bits (231), Expect = 2e-19
Identities = 57/152 (37%), Positives = 79/152 (51%), Gaps = 24/152 (15%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ FL D +++DKYLLAM YF RA ++ RI+FF+ALYLAN
Sbjct: 421 AFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLAND 480
Query: 133 VEEDEEETKYEIFPWALGKNW------------------------RKLFPNFLKLRDQLW 168
+EED+E+ K IF + GK R F KLR Q +
Sbjct: 481 MEEDDEDPKQNIFYFLYGKTRSRIPLVRNRRFQLCRCMNPRARKNRSQIALFQKLRFQFF 540
Query: 169 DRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
+ RA VSR EE+ A P H++W R+R+
Sbjct: 541 CSMSGRAWVSREELEEIQAYDPEHWVWARDRA 572
>gi|239508929 PREDICTED: similar to Putative WBSCR19-like protein 7
[Homo sapiens]
Length = 575
Score = 93.6 bits (231), Expect = 2e-19
Identities = 57/152 (37%), Positives = 79/152 (51%), Gaps = 24/152 (15%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ FL D +++DKYLLAM YF RA ++ RI+FF+ALYLAN
Sbjct: 421 AFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLAND 480
Query: 133 VEEDEEETKYEIFPWALGKNW------------------------RKLFPNFLKLRDQLW 168
+EED+E+ K IF + GK R F KLR Q +
Sbjct: 481 MEEDDEDPKQNIFYFLYGKTRSRIPLVRNRRFQLCRCMNPRARKNRSQIALFQKLRFQFF 540
Query: 169 DRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
+ RA VSR EE+ A P H++W R+R+
Sbjct: 541 CSMSGRAWVSREELEEIQAYDPEHWVWARDRA 572
>gi|118601064 speedy homolog E3 [Homo sapiens]
Length = 172
Score = 89.0 bits (219), Expect = 4e-18
Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 24/152 (15%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ FL D +++DKYLLAM YF RA ++ RI+FF+ALYLAN
Sbjct: 18 AFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLAND 77
Query: 133 VEEDEEETKYEIFPWALG----------KNW----RKLFPN----------FLKLRDQLW 168
+EED+E K +IF + G K+W R + P F K R Q +
Sbjct: 78 MEEDDEAPKQKIFYFLYGKTHSHIPLRPKHWFQLCRPMNPRARKNCSQIALFQKRRFQFF 137
Query: 169 DRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
+ RA VS EE+ A P H++W R+R+
Sbjct: 138 CSMRCRAWVSPEELEEIQAYDPEHWVWARDRA 169
>gi|30795188 Williams Beuren syndrome chromosome region 19 protein
[Homo sapiens]
Length = 336
Score = 86.7 bits (213), Expect = 2e-17
Identities = 48/107 (44%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ FL D +++DKYLLAM YF RA F ++ R++FF+ALYLAN
Sbjct: 157 AFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRLHFFLALYLAND 216
Query: 133 VEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSR 179
+EED+E++K IF + GKN R P K R QL+ ++ RA +R
Sbjct: 217 MEEDDEDSKQNIFHFLYGKN-RSRIPLLRKRRFQLYRSMNPRARKNR 262
>gi|194595492 speedy homolog E5 [Homo sapiens]
Length = 337
Score = 86.3 bits (212), Expect = 3e-17
Identities = 59/177 (33%), Positives = 83/177 (46%), Gaps = 49/177 (27%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ FL D +++DKYLLAM YF RA F ++ RI+FF+ALYLAN
Sbjct: 158 AFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAND 217
Query: 133 VEEDEEETKYEIFPWALGKN----------W----RKLFPN------------------- 159
+EED+E++K IF + GKN W R + P
Sbjct: 218 MEEDDEDSKQNIFHFLYGKNRSRIPLLRKRWFQLGRSMNPRARKNRSRIPLLRKRRFQLG 277
Query: 160 ----------------FLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
F K R Q + + RA VS EE+ A P H++W R+R+
Sbjct: 278 RSMNLRARKNRSQIVLFQKRRFQFFCSMSGRAWVSPEELEEIQAYDPEHWVWARDRA 334
>gi|239743228 PREDICTED: WBSCR19-like protein 8-like isoform 2 [Homo
sapiens]
Length = 402
Score = 81.6 bits (200), Expect = 7e-16
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 55 KSKRPKGPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFT 114
K K + L++ + AF +L +D +I+ FL D +++DKYLLAM VYF RA
Sbjct: 180 KMKLKRRRVLLVLPEHHEAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIVYFSRAGLP 239
Query: 115 ISEHTRINFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYR 174
++ RI+FF+ALYLAN +EED+E++K IF + GK R P K QL ++ R
Sbjct: 240 SWQYQRIHFFLALYLANDMEEDDEDSKQNIFHFLYGKT-RSRIPLLRKRWFQLGRSMNPR 298
Query: 175 AIVSR 179
A +R
Sbjct: 299 ARKNR 303
Score = 34.7 bits (78), Expect = 0.099
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 160 FLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
F KLR Q + + RA VS EE+ A P H++W R+R+
Sbjct: 359 FQKLRFQFFCSMSGRAWVSPEELEEIQAYDPEHWVWARDRA 399
>gi|239508903 PREDICTED: WBSCR19-like protein 8-like [Homo sapiens]
Length = 402
Score = 81.6 bits (200), Expect = 7e-16
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 55 KSKRPKGPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFT 114
K K + L++ + AF +L +D +I+ FL D +++DKYLLAM VYF RA
Sbjct: 180 KMKLKRRRVLLVLPEHHEAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIVYFSRAGLP 239
Query: 115 ISEHTRINFFIALYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYR 174
++ RI+FF+ALYLAN +EED+E++K IF + GK R P K QL ++ R
Sbjct: 240 SWQYQRIHFFLALYLANDMEEDDEDSKQNIFHFLYGKT-RSRIPLLRKRWFQLGRSMNPR 298
Query: 175 AIVSR 179
A +R
Sbjct: 299 ARKNR 303
Score = 34.7 bits (78), Expect = 0.099
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 160 FLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
F KLR Q + + RA VS EE+ A P H++W R+R+
Sbjct: 359 FQKLRFQFFCSMSGRAWVSPEELEEIQAYDPEHWVWARDRA 399
>gi|226246595 speedy homolog E6 [Homo sapiens]
Length = 402
Score = 80.1 bits (196), Expect = 2e-15
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ FL D +++DKYLLAM YF RA F ++ RI+FF+ALYLAN
Sbjct: 198 AFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAND 257
Query: 133 VEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSR 179
+EED+E++K IF + KN R P K QL ++ RA +R
Sbjct: 258 MEEDDEDSKQNIFHFLYRKN-RSRIPLLRKRWFQLGHSMNPRARKNR 303
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 160 FLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
F K R + + RA VS EE+ A P H++W R+R+
Sbjct: 359 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDRA 399
>gi|239743297 PREDICTED: speedy homolog E6 [Homo sapiens]
Length = 402
Score = 80.1 bits (196), Expect = 2e-15
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ FL D +++DKYLLAM YF RA F ++ RI+FF+ALYLAN
Sbjct: 198 AFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAND 257
Query: 133 VEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSR 179
+EED+E++K IF + KN R P K QL ++ RA +R
Sbjct: 258 MEEDDEDSKQNIFHFLYRKN-RSRIPLLRKRWFQLGHSMNPRARKNR 303
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 160 FLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
F K R + + RA VS EE+ A P H++W R+R+
Sbjct: 359 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDRA 399
>gi|169170099 PREDICTED: similar to speedy homolog A [Homo sapiens]
Length = 265
Score = 80.1 bits (196), Expect = 2e-15
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ L D +++DKYLLAM YF RA ++ RI+FF+ALYLAN
Sbjct: 111 AFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLAND 170
Query: 133 VEEDEEETKYEIFPW----------ALGKNWRKL--------------FPNFLKLRDQLW 168
+EED+E K IF + L + W +L F K R +
Sbjct: 171 MEEDDEAPKQNIFYFLYEETRSHIPLLRELWFQLCRYMNPRARKNCSQIALFRKYRFHFF 230
Query: 169 DRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
+ RA VS EE+ A P H++W R+R+
Sbjct: 231 CSMRCRAWVSLEELEEIQAYDPEHWVWARDRA 262
>gi|239508980 PREDICTED: speedy homolog E6 (Xenopus laevis) [Homo
sapiens]
Length = 402
Score = 80.1 bits (196), Expect = 2e-15
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ FL D +++DKYLLAM YF RA F ++ RI+FF+ALYLAN
Sbjct: 198 AFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAND 257
Query: 133 VEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSR 179
+EED+E++K IF + KN R P K QL ++ RA +R
Sbjct: 258 MEEDDEDSKQNIFHFLYRKN-RSRIPLLRKRWFQLGHSMNPRARKNR 303
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 160 FLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
F K R + + RA VS EE+ A P H++W R+R+
Sbjct: 359 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDRA 399
>gi|239508919 PREDICTED: similar to speedy homolog A [Homo sapiens]
Length = 265
Score = 80.1 bits (196), Expect = 2e-15
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ L D +++DKYLLAM YF RA ++ RI+FF+ALYLAN
Sbjct: 111 AFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLAND 170
Query: 133 VEEDEEETKYEIFPW----------ALGKNWRKL--------------FPNFLKLRDQLW 168
+EED+E K IF + L + W +L F K R +
Sbjct: 171 MEEDDEAPKQNIFYFLYEETRSHIPLLRELWFQLCRYMNPRARKNCSQIALFRKYRFHFF 230
Query: 169 DRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
+ RA VS EE+ A P H++W R+R+
Sbjct: 231 CSMRCRAWVSLEELEEIQAYDPEHWVWARDRA 262
>gi|71979927 speedy homolog E2 [Homo sapiens]
Length = 258
Score = 80.1 bits (196), Expect = 2e-15
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ FL D +++DKYLLAM YF RA F ++ RI+FF+ALYLAN
Sbjct: 54 AFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAND 113
Query: 133 VEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSR 179
+EED+E++K IF + KN R P K QL ++ RA +R
Sbjct: 114 MEEDDEDSKQNIFHFLYRKN-RSRIPLLRKRWFQLGHSMNPRARKNR 159
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 160 FLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
F K R + + RA VS EE+ A P H++W R+R+
Sbjct: 215 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDRA 255
>gi|239743311 PREDICTED: similar to speedy homolog A isoform 1 [Homo
sapiens]
Length = 402
Score = 79.7 bits (195), Expect = 3e-15
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ FL D +++DKYLLAM YF RA F ++ RI+FF+ALYLAN
Sbjct: 198 AFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAND 257
Query: 133 VEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSR 179
+EED+E++K IF + KN R P K QL ++ RA +R
Sbjct: 258 MEEDDEDSKQNIFHFLYRKN-RSRIPLLRKPWFQLGHSMNPRARKNR 303
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 160 FLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
F K R + + RA VS EE+ A P H++W R+R+
Sbjct: 359 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDRA 399
>gi|239508994 PREDICTED: similar to speedy homolog A isoform 7 [Homo
sapiens]
Length = 402
Score = 79.7 bits (195), Expect = 3e-15
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 73 AFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANT 132
AF +L +D +I+ FL D +++DKYLLAM YF RA F ++ RI+FF+ALYLAN
Sbjct: 198 AFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAND 257
Query: 133 VEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSR 179
+EED+E++K IF + KN R P K QL ++ RA +R
Sbjct: 258 MEEDDEDSKQNIFHFLYRKN-RSRIPLLRKPWFQLGHSMNPRARKNR 303
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 160 FLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERS 200
F K R + + RA VS EE+ A P H++W R+R+
Sbjct: 359 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDRA 399
>gi|4503759 flavin containing monooxygenase 4 [Homo sapiens]
Length = 558
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Query: 173 YRAIVSRRCCEEVMAIAPTHYI-WQRERSVHHSGAVRNYNRDE--VQLPRGPSATPV--- 226
Y +V+RRCC + + P+ ++ W +ER ++ + +N ++ + + +G A +
Sbjct: 231 YNMMVTRRCCSFIAQVLPSRFLNWIQERKLN-----KRFNHEDYGLSITKGKKAKFIVND 285
Query: 227 ---DCSLCG 232
+C LCG
Sbjct: 286 ELPNCILCG 294
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 28.9 bits (63), Expect = 5.4
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 9 ETPPTVTVYVKSGSNRSHQPKKPITLKRPICKDNWQAFEKNTHNNNKSKRPKGPCLVIQR 68
E PT K G +S + + L + + + ++ E++T + + KR G + ++
Sbjct: 187 EQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTESTDSQKRRSGRQVKRRK 246
Query: 69 QDMTAFFKLFDDD 81
+ FK+ DDD
Sbjct: 247 YNEDLDFKVVDDD 259
>gi|187829742 BCL2 binding component 3 isoform 2 [Homo sapiens]
Length = 131
Score = 28.5 bits (62), Expect = 7.1
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 216 QLPRGPSATPVDCSLCGKKRRYVRLGLSSSSSLSSHTAGVTEKHSQDSYNSLSMDIIGDP 275
Q+PR S T V C +CG + SLS + E+H + S + G P
Sbjct: 14 QVPRAASTTWVPCQICGPQ-----------PSLS-----LAEQHLESPVPSAPGALAGGP 57
Query: 276 SQAYTGSEG 284
+QA G G
Sbjct: 58 TQAAPGVRG 66
>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
[Homo sapiens]
Length = 382
Score = 28.1 bits (61), Expect = 9.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 166 QLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERSVHH 203
+L+ + DY + + +C AIAP ++ + ++SV+H
Sbjct: 79 KLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYH 116
>gi|239757147 PREDICTED: similar to zinc finger protein 564 [Homo
sapiens]
Length = 577
Score = 28.1 bits (61), Expect = 9.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 202 HHSGA---VRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRLGLSSSSSLSSHTAGVTEK 258
HHS +R+Y R ++ + P C CGK Y++ S +H+AG+ K
Sbjct: 161 HHSSLNRHIRSYTRHKLYKCQEYGEKPYKCKKCGKPFSYLQ---SFKKHKRTHSAGIVYK 217
>gi|239751660 PREDICTED: hypothetical protein XP_002347962 [Homo
sapiens]
Length = 540
Score = 28.1 bits (61), Expect = 9.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 202 HHSGA---VRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRLGLSSSSSLSSHTAGVTEK 258
HHS +R+Y R ++ + P C CGK Y++ S +H+AG+ K
Sbjct: 124 HHSSLNRHIRSYTRHKLYKCQEYGEKPYKCKKCGKPFSYLQ---SFKKHKRTHSAGIVYK 180
>gi|239746166 PREDICTED: hypothetical protein XP_002343682 [Homo
sapiens]
Length = 540
Score = 28.1 bits (61), Expect = 9.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 202 HHSGA---VRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRLGLSSSSSLSSHTAGVTEK 258
HHS +R+Y R ++ + P C CGK Y++ S +H+AG+ K
Sbjct: 124 HHSSLNRHIRSYTRHKLYKCQEYGEKPYKCKKCGKPFSYLQ---SFKKHKRTHSAGIVYK 180
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,733,622
Number of Sequences: 37866
Number of extensions: 520745
Number of successful extensions: 1264
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 41
length of query: 286
length of database: 18,247,518
effective HSP length: 101
effective length of query: 185
effective length of database: 14,423,052
effective search space: 2668264620
effective search space used: 2668264620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.