Guide to the Human Genome
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Name: LOC442572 Sequence: fasta or formatted (402aa) NCBI GI: 239508903
Description:

PREDICTED: WBSCR19-like protein 8-like

Not currently referenced in the text

Other entries for this name:
alt prot {147aa} PREDICTED: hypothetical protein
alt mRNA {402aa} PREDICTED: WBSCR19-like protein 8-like isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         18           1
 C cysteine            1.5          6           1
 D aspartate           4.5         18           2
 E glutamate           9.5         38           3
 F phenylalanine       4.2         17           2
 G glycine             3.5         14           1
 H histidine           2.5         10           2
 I isoleucine          3.2         13           1
 K lysine              7.0         28           2
 L leucine            10.2         41           2
 M methionine          2.5         10           1
 N asparagine          2.5         10           1
 P proline             7.7         31           2
 Q glutamine           4.7         19           2
 R arginine           12.4         50           3
 S serine              7.2         29           1
 T threonine           2.2          9           2
 V valine              5.0         20           2
 W tryptophan          3.2         13           2
 Y tyrosine            2.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: WBSCR19-like protein 8-like 
LOC442572             1.000   PREDICTED: WBSCR19-like protein 8-like isoform 2 [H...
SPDYE6                0.936   speedy homolog E6 
SPDYE6                0.936   PREDICTED: speedy homolog E6 
SPDYE6                0.933   PREDICTED: speedy homolog E6 (Xenopus laevis) [Homo...
LOC442609             0.932   PREDICTED: similar to speedy homolog A isoform 1 [H...
LOC442609             0.932   PREDICTED: similar to speedy homolog A isoform 7 [H...
SPDYE5                0.748   speedy homolog E5 
SPDYE1                0.725   Williams Beuren syndrome chromosome region 19 protei...
LOC100288807          0.664   PREDICTED: hypothetical protein XP_002342780 
LOC100288807          0.664   PREDICTED: similar to Putative WBSCR19-like protein...
SPDYE2                0.574   speedy homolog E2 
LOC100132585          0.386   PREDICTED: similar to speedy homolog A 
LOC100132585          0.386   PREDICTED: similar to speedy homolog A 
SPDYE3                0.307   speedy homolog E3 
LOC442572             0.298   PREDICTED: hypothetical protein 
SPDYE4                0.265   speedy homolog E4 
LOC100132581          0.075   PREDICTED: hypothetical protein 
LOC100132581          0.075   PREDICTED: hypothetical protein 
SPDYA                 0.070   speedy homolog A isoform 2 
SPDYA                 0.070   speedy homolog A isoform 1 
SPDYA                 0.070   speedy homolog A isoform 1 
SPDYC                 0.070   speedy C 
LOC100132733          0.015   PREDICTED: similar to FLJ00310 protein 
SRRM2                 0.012   splicing coactivator subunit SRm300 
SRRM1                 0.012   serine/arginine repetitive matrix 1 
CCDC9                 0.011   coiled-coil domain containing 9 
KCNQ3                 0.010   potassium voltage-gated channel KQT-like protein 3 [H...
PRPF4B                0.010   serine/threonine-protein kinase PRP4K 
PRPF38A               0.010   PRP38 pre-mRNA processing factor 38 (yeast) domain c...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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