Guide to the Human Genome
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Name: SPDYE5 Sequence: fasta or formatted (337aa) NCBI GI: 194595492
Description:

speedy homolog E5

Referenced in:

Cyclins and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         20           1
 C cysteine            1.5          5           1
 D aspartate           4.2         14           2
 E glutamate           9.8         33           3
 F phenylalanine       5.0         17           2
 G glycine             3.3         11           1
 H histidine           2.7          9           2
 I isoleucine          3.0         10           1
 K lysine              7.1         24           1
 L leucine            10.4         35           2
 M methionine          3.3         11           1
 N asparagine          2.7          9           1
 P proline             7.1         24           2
 Q glutamine           3.9         13           2
 R arginine           11.0         37           3
 S serine              7.4         25           1
 T threonine           0.6          2           1
 V valine              4.7         16           2
 W tryptophan          4.2         14           2
 Y tyrosine            2.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   speedy homolog E5 
SPDYE1                0.935   Williams Beuren syndrome chromosome region 19 protei...
SPDYE6                0.902   speedy homolog E6 
SPDYE6                0.902   PREDICTED: speedy homolog E6 
SPDYE6                0.902   PREDICTED: speedy homolog E6 (Xenopus laevis) [Homo...
LOC442572             0.902   PREDICTED: WBSCR19-like protein 8-like isoform 2 [H...
LOC442572             0.902   PREDICTED: WBSCR19-like protein 8-like 
LOC442609             0.897   PREDICTED: similar to speedy homolog A isoform 1 [H...
LOC442609             0.897   PREDICTED: similar to speedy homolog A isoform 7 [H...
LOC100288807          0.801   PREDICTED: hypothetical protein XP_002342780 
LOC100288807          0.801   PREDICTED: similar to Putative WBSCR19-like protein...
SPDYE2                0.622   speedy homolog E2 
LOC100132585          0.482   PREDICTED: similar to speedy homolog A 
LOC100132585          0.482   PREDICTED: similar to speedy homolog A 
SPDYE3                0.386   speedy homolog E3 
SPDYE4                0.377   speedy homolog E4 
LOC442572             0.189   PREDICTED: hypothetical protein 
LOC100132581          0.104   PREDICTED: hypothetical protein 
LOC100132581          0.104   PREDICTED: hypothetical protein 
SPDYC                 0.092   speedy C 
SPDYA                 0.089   speedy homolog A isoform 2 
SPDYA                 0.089   speedy homolog A isoform 1 
SPDYA                 0.089   speedy homolog A isoform 1 
TERF2IP               0.025   telomeric repeat binding factor 2, interacting prote...
LOC100133063          0.012   PREDICTED: similar to breast cancer anti-estrogen r...
KCNJ4                 0.009   potassium inwardly-rectifying channel J4 
KCNJ4                 0.009   potassium inwardly-rectifying channel J4 
PRPF4B                0.009   serine/threonine-protein kinase PRP4K 
DST                   0.007   dystonin isoform 4 
DST                   0.007   dystonin isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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