Guide to the Human Genome
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Name: SPDYE3 Sequence: fasta or formatted (172aa) NCBI GI: 118601064
Description:

speedy homolog E3

Referenced in:

Cyclins and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         15           1
 C cysteine            2.3          4           1
 D aspartate           5.2          9           2
 E glutamate           6.4         11           2
 F phenylalanine       7.0         12           2
 G glycine             1.2          2           1
 H histidine           3.5          6           1
 I isoleucine          4.1          7           1
 K lysine              6.4         11           1
 L leucine            10.5         18           2
 M methionine          2.9          5           1
 N asparagine          2.3          4           1
 P proline             5.8         10           1
 Q glutamine           4.7          8           1
 R arginine           10.5         18           3
 S serine              5.2          9           1
 T threonine           0.6          1           1
 V valine              4.1          7           1
 W tryptophan          3.5          6           1
 Y tyrosine            5.2          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   speedy homolog E3 
LOC100132585          0.889   PREDICTED: similar to speedy homolog A 
LOC100132585          0.889   PREDICTED: similar to speedy homolog A 
LOC100288807          0.830   PREDICTED: hypothetical protein XP_002342780 
LOC100288807          0.830   PREDICTED: similar to Putative WBSCR19-like protein...
SPDYE5                0.789   speedy homolog E5 
SPDYE1                0.786   Williams Beuren syndrome chromosome region 19 protei...
SPDYE6                0.751   speedy homolog E6 
SPDYE6                0.751   PREDICTED: speedy homolog E6 
SPDYE6                0.751   PREDICTED: speedy homolog E6 (Xenopus laevis) [Homo...
SPDYE2                0.751   speedy homolog E2 
LOC442609             0.748   PREDICTED: similar to speedy homolog A isoform 1 [H...
LOC442572             0.748   PREDICTED: WBSCR19-like protein 8-like isoform 2 [H...
LOC442609             0.748   PREDICTED: similar to speedy homolog A isoform 7 [H...
LOC442572             0.748   PREDICTED: WBSCR19-like protein 8-like 
SPDYE4                0.604   speedy homolog E4 
LOC100132581          0.323   PREDICTED: hypothetical protein 
LOC100132581          0.323   PREDICTED: hypothetical protein 
SPDYC                 0.235   speedy C 
SPDYA                 0.188   speedy homolog A isoform 2 
SPDYA                 0.188   speedy homolog A isoform 1 
SPDYA                 0.188   speedy homolog A isoform 1 
ZNF213                0.009   zinc finger protein 213 
ZNF213                0.009   zinc finger protein 213 
LOC442572             0.009   PREDICTED: hypothetical protein 
GEMIN4                0.009   gemin 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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