Guide to the Human Genome
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Name: LOC100132585 Sequence: fasta or formatted (265aa) NCBI GI: 239508919
Description:

PREDICTED: similar to speedy homolog A

Not currently referenced in the text

Other entries for this name:
alt mRNA {265aa} PREDICTED: similar to speedy homolog A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         18           1
 C cysteine            2.3          6           1
 D aspartate           5.7         15           2
 E glutamate          10.2         27           2
 F phenylalanine       4.2         11           2
 G glycine             3.0          8           1
 H histidine           2.3          6           1
 I isoleucine          3.4          9           1
 K lysine              4.9         13           1
 L leucine            10.9         29           2
 M methionine          3.0          8           2
 N asparagine          1.9          5           1
 P proline             7.2         19           2
 Q glutamine           4.9         13           1
 R arginine            9.1         24           3
 S serine              6.8         18           1
 T threonine           1.5          4           1
 V valine              4.5         12           2
 W tryptophan          3.0          8           1
 Y tyrosine            4.5         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to speedy homolog A 
LOC100132585          1.000   PREDICTED: similar to speedy homolog A 
LOC100288807          0.670   PREDICTED: hypothetical protein XP_002342780 
LOC100288807          0.670   PREDICTED: similar to Putative WBSCR19-like protein...
SPDYE1                0.636   Williams Beuren syndrome chromosome region 19 protei...
SPDYE5                0.626   speedy homolog E5 
SPDYE6                0.619   speedy homolog E6 
SPDYE6                0.619   PREDICTED: speedy homolog E6 
SPDYE6                0.619   PREDICTED: speedy homolog E6 (Xenopus laevis) [Homo...
LOC442609             0.617   PREDICTED: similar to speedy homolog A isoform 1 [H...
LOC442609             0.617   PREDICTED: similar to speedy homolog A isoform 7 [H...
LOC442572             0.609   PREDICTED: WBSCR19-like protein 8-like isoform 2 [H...
LOC442572             0.609   PREDICTED: WBSCR19-like protein 8-like 
SPDYE3                0.572   speedy homolog E3 
SPDYE2                0.562   speedy homolog E2 
SPDYE4                0.549   speedy homolog E4 
LOC442572             0.300   PREDICTED: hypothetical protein 
LOC100132581          0.264   PREDICTED: hypothetical protein 
LOC100132581          0.264   PREDICTED: hypothetical protein 
SPDYC                 0.136   speedy C 
SPDYA                 0.104   speedy homolog A isoform 2 
SPDYA                 0.104   speedy homolog A isoform 1 
SPDYA                 0.104   speedy homolog A isoform 1 
HCLS1                 0.017   hematopoietic cell-specific Lyn substrate 1 
PPM1E                 0.015   protein phosphatase 1E 
PPP1R13L              0.013   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.013   protein phosphatase 1, regulatory subunit 13 like [H...
CHGA                  0.013   chromogranin A precursor 
TEX2                  0.013   testis expressed sequence 2 
TBX2                  0.013   T-box 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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