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Search of human proteins with 56912202
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56912202 speedy C [Homo sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56912202 speedy C [Homo sapiens] 628 e-180
gi|56961678 speedy homolog A isoform 2 [Homo sapiens] 184 1e-46
gi|217416376 speedy homolog A isoform 1 [Homo sapiens] 184 1e-46
gi|60498969 speedy homolog A isoform 1 [Homo sapiens] 184 1e-46
gi|189303549 speedy homolog E4 [Homo sapiens] 107 1e-23
gi|118601064 speedy homolog E3 [Homo sapiens] 105 5e-23
gi|239743254 PREDICTED: hypothetical protein XP_002342780 [Homo ... 102 3e-22
gi|239508929 PREDICTED: similar to Putative WBSCR19-like protein... 102 3e-22
gi|169170099 PREDICTED: similar to speedy homolog A [Homo sapiens] 97 1e-20
gi|239508919 PREDICTED: similar to speedy homolog A [Homo sapiens] 97 1e-20
gi|194595492 speedy homolog E5 [Homo sapiens] 88 8e-18
gi|30795188 Williams Beuren syndrome chromosome region 19 protei... 87 2e-17
gi|239743228 PREDICTED: WBSCR19-like protein 8-like isoform 2 [H... 82 7e-16
gi|239508903 PREDICTED: WBSCR19-like protein 8-like [Homo sapiens] 82 7e-16
gi|226246595 speedy homolog E6 [Homo sapiens] 76 4e-14
gi|239743311 PREDICTED: similar to speedy homolog A isoform 1 [H... 76 4e-14
gi|239743297 PREDICTED: speedy homolog E6 [Homo sapiens] 76 4e-14
gi|239508994 PREDICTED: similar to speedy homolog A isoform 7 [H... 76 4e-14
gi|239508980 PREDICTED: speedy homolog E6 (Xenopus laevis) [Homo... 76 4e-14
gi|71979927 speedy homolog E2 [Homo sapiens] 76 4e-14
gi|56549696 E1A binding protein p400 [Homo sapiens] 33 0.39
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 33 0.39
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 32 0.66
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens] 32 0.66
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens] 32 0.66
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 32 0.87
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 31 1.1
gi|223468705 5-hydroxytryptamine receptor 3 subunit D isoform 1 ... 31 1.5
gi|47519877 5-hydroxytryptamine receptor 3 subunit D isoform 2 [... 31 1.5
gi|47519913 5-hydroxytryptamine receptor 3 subunit E [Homo sapiens] 30 1.9
>gi|56912202 speedy C [Homo sapiens]
Length = 293
Score = 628 bits (1619), Expect = e-180
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MLWAIPELGSPCPISISYEMSDSQDPTTSPVVTTQVELGGCSRQGGGNGFLRFRQHQEVQ 60
MLWAIPELGSPCPISISYEMSDSQDPTTSPVVTTQVELGGCSRQGGGNGFLRFRQHQEVQ
Sbjct: 1 MLWAIPELGSPCPISISYEMSDSQDPTTSPVVTTQVELGGCSRQGGGNGFLRFRQHQEVQ 60
Query: 61 AFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAND 120
AFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAND
Sbjct: 61 AFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAND 120
Query: 121 MEEDLEGPKCEIFPWALGKDWCLRVGKFLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFH 180
MEEDLEGPKCEIFPWALGKDWCLRVGKFLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFH
Sbjct: 121 MEEDLEGPKCEIFPWALGKDWCLRVGKFLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFH 180
Query: 181 WAWTRDRRPHHGGVQRVCPQVPVRLPRGPGLSPPHCSPCGLPQHCSSHLLKPVSSKCPSL 240
WAWTRDRRPHHGGVQRVCPQVPVRLPRGPGLSPPHCSPCGLPQHCSSHLLKPVSSKCPSL
Sbjct: 181 WAWTRDRRPHHGGVQRVCPQVPVRLPRGPGLSPPHCSPCGLPQHCSSHLLKPVSSKCPSL 240
Query: 241 TSECHRPPSQNYLSRVKNAWGGDFLIVLPPQMQLEPGTYSLRIFPKPPARPGH 293
TSECHRPPSQNYLSRVKNAWGGDFLIVLPPQMQLEPGTYSLRIFPKPPARPGH
Sbjct: 241 TSECHRPPSQNYLSRVKNAWGGDFLIVLPPQMQLEPGTYSLRIFPKPPARPGH 293
>gi|56961678 speedy homolog A isoform 2 [Homo sapiens]
Length = 286
Score = 184 bits (466), Expect = 1e-46
Identities = 88/166 (53%), Positives = 112/166 (67%)
Query: 55 QHQEVQAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLA 114
Q Q++ AF L +D +Q+FL D C +I+DKYLLAM VYF+RA +SE+T + F+A
Sbjct: 67 QRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIA 126
Query: 115 LYLANDMEEDLEGPKCEIFPWALGKDWCLRVGKFLHQRDKLWARMGFRAVVSRQCCEEVM 174
LYLAN +EED E K EIFPWALGK+W FL RD+LW R+ +RA+VSR+CCEEVM
Sbjct: 127 LYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRRCCEEVM 186
Query: 175 AKEPFHWAWTRDRRPHHGGVQRVCPQVPVRLPRGPGLSPPHCSPCG 220
A P H+ W R+R HH G R + V+LPRGP +P CS CG
Sbjct: 187 AIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCG 232
>gi|217416376 speedy homolog A isoform 1 [Homo sapiens]
Length = 313
Score = 184 bits (466), Expect = 1e-46
Identities = 88/166 (53%), Positives = 112/166 (67%)
Query: 55 QHQEVQAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLA 114
Q Q++ AF L +D +Q+FL D C +I+DKYLLAM VYF+RA +SE+T + F+A
Sbjct: 67 QRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIA 126
Query: 115 LYLANDMEEDLEGPKCEIFPWALGKDWCLRVGKFLHQRDKLWARMGFRAVVSRQCCEEVM 174
LYLAN +EED E K EIFPWALGK+W FL RD+LW R+ +RA+VSR+CCEEVM
Sbjct: 127 LYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRRCCEEVM 186
Query: 175 AKEPFHWAWTRDRRPHHGGVQRVCPQVPVRLPRGPGLSPPHCSPCG 220
A P H+ W R+R HH G R + V+LPRGP +P CS CG
Sbjct: 187 AIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCG 232
>gi|60498969 speedy homolog A isoform 1 [Homo sapiens]
Length = 313
Score = 184 bits (466), Expect = 1e-46
Identities = 88/166 (53%), Positives = 112/166 (67%)
Query: 55 QHQEVQAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLA 114
Q Q++ AF L +D +Q+FL D C +I+DKYLLAM VYF+RA +SE+T + F+A
Sbjct: 67 QRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIA 126
Query: 115 LYLANDMEEDLEGPKCEIFPWALGKDWCLRVGKFLHQRDKLWARMGFRAVVSRQCCEEVM 174
LYLAN +EED E K EIFPWALGK+W FL RD+LW R+ +RA+VSR+CCEEVM
Sbjct: 127 LYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRRCCEEVM 186
Query: 175 AKEPFHWAWTRDRRPHHGGVQRVCPQVPVRLPRGPGLSPPHCSPCG 220
A P H+ W R+R HH G R + V+LPRGP +P CS CG
Sbjct: 187 AIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCG 232
>gi|189303549 speedy homolog E4 [Homo sapiens]
Length = 237
Score = 107 bits (267), Expect = 1e-23
Identities = 61/128 (47%), Positives = 79/128 (61%), Gaps = 1/128 (0%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LL D VQ+FL+ D ++SDKYLLAMV+ YF RA L +Y FLALYLA+
Sbjct: 107 EAFNRLLGDPVVQKFLAWDKDLRVSDKYLLAMVIAYFSRAGLFSWQYQRIHFFLALYLAS 166
Query: 120 DMEEDLEGPKCEIFPWALGKDWCLRVGKFLHQRDKLWARMGFRAVVSRQCCEEVMAKEPF 179
DMEED + PK +IF + GK++ R F R +L M +R VS + EE+ A +P
Sbjct: 167 DMEEDNQAPKQDIFSFLYGKNYSQR-PLFHKLRYQLLCSMRWRTWVSPEEMEEIQAYDPE 225
Query: 180 HWAWTRDR 187
HW W RDR
Sbjct: 226 HWVWARDR 233
>gi|118601064 speedy homolog E3 [Homo sapiens]
Length = 172
Score = 105 bits (262), Expect = 5e-23
Identities = 63/152 (41%), Positives = 81/152 (53%), Gaps = 24/152 (15%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+ YF RA L +Y FLALYLAN
Sbjct: 17 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLAN 76
Query: 120 DMEEDLEGPKCEIFPWALG----------KDW--------------CLRVGKFLHQRDKL 155
DMEED E PK +IF + G K W C ++ F +R +
Sbjct: 77 DMEEDDEAPKQKIFYFLYGKTHSHIPLRPKHWFQLCRPMNPRARKNCSQIALFQKRRFQF 136
Query: 156 WARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
+ M RA VS + EE+ A +P HW W RDR
Sbjct: 137 FCSMRCRAWVSPEELEEIQAYDPEHWVWARDR 168
>gi|239743254 PREDICTED: hypothetical protein XP_002342780 [Homo
sapiens]
Length = 575
Score = 102 bits (255), Expect = 3e-22
Identities = 63/152 (41%), Positives = 80/152 (52%), Gaps = 24/152 (15%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+ YF RA L +Y FLALYLAN
Sbjct: 420 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLAN 479
Query: 120 DMEEDLEGPKCEIFPWALGKD---------------WCL---------RVGKFLHQRDKL 155
DMEED E PK IF + GK C+ ++ F R +
Sbjct: 480 DMEEDDEDPKQNIFYFLYGKTRSRIPLVRNRRFQLCRCMNPRARKNRSQIALFQKLRFQF 539
Query: 156 WARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
+ M RA VSR+ EE+ A +P HW W RDR
Sbjct: 540 FCSMSGRAWVSREELEEIQAYDPEHWVWARDR 571
>gi|239508929 PREDICTED: similar to Putative WBSCR19-like protein 7
[Homo sapiens]
Length = 575
Score = 102 bits (255), Expect = 3e-22
Identities = 63/152 (41%), Positives = 80/152 (52%), Gaps = 24/152 (15%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+ YF RA L +Y FLALYLAN
Sbjct: 420 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLAN 479
Query: 120 DMEEDLEGPKCEIFPWALGKD---------------WCL---------RVGKFLHQRDKL 155
DMEED E PK IF + GK C+ ++ F R +
Sbjct: 480 DMEEDDEDPKQNIFYFLYGKTRSRIPLVRNRRFQLCRCMNPRARKNRSQIALFQKLRFQF 539
Query: 156 WARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
+ M RA VSR+ EE+ A +P HW W RDR
Sbjct: 540 FCSMSGRAWVSREELEEIQAYDPEHWVWARDR 571
>gi|169170099 PREDICTED: similar to speedy homolog A [Homo sapiens]
Length = 265
Score = 97.4 bits (241), Expect = 1e-20
Identities = 61/152 (40%), Positives = 77/152 (50%), Gaps = 24/152 (15%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ L+ D ++SDKYLLAMV+ YF RA L +Y FLALYLAN
Sbjct: 110 EAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLAN 169
Query: 120 DMEEDLEGPKCEIFPW----------ALGKDW--------------CLRVGKFLHQRDKL 155
DMEED E PK IF + L + W C ++ F R
Sbjct: 170 DMEEDDEAPKQNIFYFLYEETRSHIPLLRELWFQLCRYMNPRARKNCSQIALFRKYRFHF 229
Query: 156 WARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
+ M RA VS + EE+ A +P HW W RDR
Sbjct: 230 FCSMRCRAWVSLEELEEIQAYDPEHWVWARDR 261
>gi|239508919 PREDICTED: similar to speedy homolog A [Homo sapiens]
Length = 265
Score = 97.4 bits (241), Expect = 1e-20
Identities = 61/152 (40%), Positives = 77/152 (50%), Gaps = 24/152 (15%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ L+ D ++SDKYLLAMV+ YF RA L +Y FLALYLAN
Sbjct: 110 EAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLAN 169
Query: 120 DMEEDLEGPKCEIFPW----------ALGKDW--------------CLRVGKFLHQRDKL 155
DMEED E PK IF + L + W C ++ F R
Sbjct: 170 DMEEDDEAPKQNIFYFLYEETRSHIPLLRELWFQLCRYMNPRARKNCSQIALFRKYRFHF 229
Query: 156 WARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
+ M RA VS + EE+ A +P HW W RDR
Sbjct: 230 FCSMRCRAWVSLEELEEIQAYDPEHWVWARDR 261
>gi|194595492 speedy homolog E5 [Homo sapiens]
Length = 337
Score = 88.2 bits (217), Expect = 8e-18
Identities = 63/177 (35%), Positives = 79/177 (44%), Gaps = 49/177 (27%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+ YF RA +Y FLALYLAN
Sbjct: 157 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAN 216
Query: 120 DMEEDLEGPKCEIFPWALGKD----------WC--------------------------- 142
DMEED E K IF + GK+ W
Sbjct: 217 DMEEDDEDSKQNIFHFLYGKNRSRIPLLRKRWFQLGRSMNPRARKNRSRIPLLRKRRFQL 276
Query: 143 -----LRVGK-------FLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
LR K F +R + + M RA VS + EE+ A +P HW W RDR
Sbjct: 277 GRSMNLRARKNRSQIVLFQKRRFQFFCSMSGRAWVSPEELEEIQAYDPEHWVWARDR 333
>gi|30795188 Williams Beuren syndrome chromosome region 19 protein
[Homo sapiens]
Length = 336
Score = 86.7 bits (213), Expect = 2e-17
Identities = 60/177 (33%), Positives = 78/177 (44%), Gaps = 49/177 (27%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+ YF RA +Y FLALYLAN
Sbjct: 156 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRLHFFLALYLAN 215
Query: 120 DMEEDLEGPKCEIFPWALGKD--------------------------------------- 140
DMEED E K IF + GK+
Sbjct: 216 DMEEDDEDSKQNIFHFLYGKNRSRIPLLRKRRFQLYRSMNPRARKNRSHIPLVRKRRFQL 275
Query: 141 -WCL---------RVGKFLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
C+ ++ F +R + M RA VS + EE+ A +P HW W RDR
Sbjct: 276 RRCMNPRARKNRSQIVLFQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDR 332
>gi|239743228 PREDICTED: WBSCR19-like protein 8-like isoform 2 [Homo
sapiens]
Length = 402
Score = 81.6 bits (200), Expect = 7e-16
Identities = 44/80 (55%), Positives = 53/80 (66%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+VYF RA L +Y FLALYLAN
Sbjct: 197 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIVYFSRAGLPSWQYQRIHFFLALYLAN 256
Query: 120 DMEEDLEGPKCEIFPWALGK 139
DMEED E K IF + GK
Sbjct: 257 DMEEDDEDSKQNIFHFLYGK 276
Score = 36.2 bits (82), Expect = 0.035
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 148 FLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
F R + + M RA VS + EE+ A +P HW W RDR
Sbjct: 359 FQKLRFQFFCSMSGRAWVSPEELEEIQAYDPEHWVWARDR 398
>gi|239508903 PREDICTED: WBSCR19-like protein 8-like [Homo sapiens]
Length = 402
Score = 81.6 bits (200), Expect = 7e-16
Identities = 44/80 (55%), Positives = 53/80 (66%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+VYF RA L +Y FLALYLAN
Sbjct: 197 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIVYFSRAGLPSWQYQRIHFFLALYLAN 256
Query: 120 DMEEDLEGPKCEIFPWALGK 139
DMEED E K IF + GK
Sbjct: 257 DMEEDDEDSKQNIFHFLYGK 276
Score = 36.2 bits (82), Expect = 0.035
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 148 FLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
F R + + M RA VS + EE+ A +P HW W RDR
Sbjct: 359 FQKLRFQFFCSMSGRAWVSPEELEEIQAYDPEHWVWARDR 398
>gi|226246595 speedy homolog E6 [Homo sapiens]
Length = 402
Score = 75.9 bits (185), Expect = 4e-14
Identities = 41/81 (50%), Positives = 51/81 (62%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+ YF RA +Y FLALYLAN
Sbjct: 197 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAN 256
Query: 120 DMEEDLEGPKCEIFPWALGKD 140
DMEED E K IF + K+
Sbjct: 257 DMEEDDEDSKQNIFHFLYRKN 277
Score = 37.0 bits (84), Expect = 0.021
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 148 FLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
F +R + M RA VS + EE+ A +P HW W RDR
Sbjct: 359 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDR 398
>gi|239743311 PREDICTED: similar to speedy homolog A isoform 1 [Homo
sapiens]
Length = 402
Score = 75.9 bits (185), Expect = 4e-14
Identities = 41/81 (50%), Positives = 51/81 (62%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+ YF RA +Y FLALYLAN
Sbjct: 197 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAN 256
Query: 120 DMEEDLEGPKCEIFPWALGKD 140
DMEED E K IF + K+
Sbjct: 257 DMEEDDEDSKQNIFHFLYRKN 277
Score = 37.0 bits (84), Expect = 0.021
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 148 FLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
F +R + M RA VS + EE+ A +P HW W RDR
Sbjct: 359 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDR 398
>gi|239743297 PREDICTED: speedy homolog E6 [Homo sapiens]
Length = 402
Score = 75.9 bits (185), Expect = 4e-14
Identities = 41/81 (50%), Positives = 51/81 (62%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+ YF RA +Y FLALYLAN
Sbjct: 197 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAN 256
Query: 120 DMEEDLEGPKCEIFPWALGKD 140
DMEED E K IF + K+
Sbjct: 257 DMEEDDEDSKQNIFHFLYRKN 277
Score = 37.0 bits (84), Expect = 0.021
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 148 FLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
F +R + M RA VS + EE+ A +P HW W RDR
Sbjct: 359 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDR 398
>gi|239508994 PREDICTED: similar to speedy homolog A isoform 7 [Homo
sapiens]
Length = 402
Score = 75.9 bits (185), Expect = 4e-14
Identities = 41/81 (50%), Positives = 51/81 (62%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+ YF RA +Y FLALYLAN
Sbjct: 197 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAN 256
Query: 120 DMEEDLEGPKCEIFPWALGKD 140
DMEED E K IF + K+
Sbjct: 257 DMEEDDEDSKQNIFHFLYRKN 277
Score = 37.0 bits (84), Expect = 0.021
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 148 FLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
F +R + M RA VS + EE+ A +P HW W RDR
Sbjct: 359 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDR 398
>gi|239508980 PREDICTED: speedy homolog E6 (Xenopus laevis) [Homo
sapiens]
Length = 402
Score = 75.9 bits (185), Expect = 4e-14
Identities = 41/81 (50%), Positives = 51/81 (62%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+ YF RA +Y FLALYLAN
Sbjct: 197 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAN 256
Query: 120 DMEEDLEGPKCEIFPWALGKD 140
DMEED E K IF + K+
Sbjct: 257 DMEEDDEDSKQNIFHFLYRKN 277
Score = 37.0 bits (84), Expect = 0.021
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 148 FLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
F +R + M RA VS + EE+ A +P HW W RDR
Sbjct: 359 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDR 398
>gi|71979927 speedy homolog E2 [Homo sapiens]
Length = 258
Score = 75.9 bits (185), Expect = 4e-14
Identities = 41/81 (50%), Positives = 51/81 (62%)
Query: 60 QAFLSLLEDSFVQEFLSKDPCFQISDKYLLAMVLVYFQRAHLKLSEYTHSSLFLALYLAN 119
+AF LLED ++ FL+ D ++SDKYLLAMV+ YF RA +Y FLALYLAN
Sbjct: 53 EAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLAN 112
Query: 120 DMEEDLEGPKCEIFPWALGKD 140
DMEED E K IF + K+
Sbjct: 113 DMEEDDEDSKQNIFHFLYRKN 133
Score = 37.0 bits (84), Expect = 0.021
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 148 FLHQRDKLWARMGFRAVVSRQCCEEVMAKEPFHWAWTRDR 187
F +R + M RA VS + EE+ A +P HW W RDR
Sbjct: 215 FQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDR 254
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 32.7 bits (73), Expect = 0.39
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 208 GPGLSPPHCSPCGLPQHCSSHLLKPVSSKCPSLTSEC---HRPPSQNYLS 254
GPG SP SP P ++ L PV+S+ P + + + P+QN S
Sbjct: 676 GPGPSPARSSPVNRPSSATNKALSPVTSRTPGVVASAPTKPQSPAQNATS 725
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 32.7 bits (73), Expect = 0.39
Identities = 36/109 (33%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 199 PQVPVRLP-RGPGLSP----PHCSPCGLPQHC-SSHLLKPVSSKCPSLTSECHRPPSQNY 252
PQ+P P +GPG S PH +P G H S H +P S+ PS RPPS+
Sbjct: 760 PQIPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHPTRP-PSRPPSRPQSVSRPPSEPP 818
Query: 253 L-----SRVKNAWGGDFLI-----VLPPQMQLEPGTYSLRIFPKPPARP 291
L + G F+I V PP P P+PP RP
Sbjct: 819 LHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGP---PQPPLRP 864
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 32.0 bits (71), Expect = 0.66
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 183 WTRDRRPH---HGGVQRVCPQVPVRLPRGPGLSPPHCSPCGLPQHCSSHLLKPVSSKCPS 239
W R +P G + PQ PR PGL P CSP + + + P C
Sbjct: 39 WPRSFKPPLSPEKGTKASGPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPCAQ 98
Query: 240 LTSECHRPPS 249
C PP+
Sbjct: 99 PAGTCPPPPT 108
>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 32.0 bits (71), Expect = 0.66
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 183 WTRDRRPH---HGGVQRVCPQVPVRLPRGPGLSPPHCSPCGLPQHCSSHLLKPVSSKCPS 239
W R +P G + PQ PR PGL P CSP + + + P C
Sbjct: 39 WPRSFKPPLSPEKGTKASGPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPCAQ 98
Query: 240 LTSECHRPPS 249
C PP+
Sbjct: 99 PAGTCPPPPT 108
>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 32.0 bits (71), Expect = 0.66
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 183 WTRDRRPH---HGGVQRVCPQVPVRLPRGPGLSPPHCSPCGLPQHCSSHLLKPVSSKCPS 239
W R +P G + PQ PR PGL P CSP + + + P C
Sbjct: 39 WPRSFKPPLSPEKGTKASGPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPCAQ 98
Query: 240 LTSECHRPPS 249
C PP+
Sbjct: 99 PAGTCPPPPT 108
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 31.6 bits (70), Expect = 0.87
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 202 PVRLPRGPGLSPPHCSPCGLPQHCSSHLLKPVSSKCPSLTSECHRPPSQNYLSRVKNAWG 261
P+ L G G PP SP G + +S +L P + + ++ P ++
Sbjct: 358 PLLLTGGGGAPPPQPSPQGASETKTSLVLDPQTGEVRLEEAQSEAPETKGAQVAAPGPAL 417
Query: 262 GDFLIVLPPQMQLEPGTYSLRIFPKPP 288
G+ VL P Q+ PG + FP PP
Sbjct: 418 GEE--VLGPLAQVVPGPPTAATFPLPP 442
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 202 PVRLPRGPGLSPPHCSPCGLPQHCSSHLLKPVSSKCPSLTSECHRPP 248
P+ +GPG P +P GL C + L S K P++ + +PP
Sbjct: 387 PMGSHQGPGPPPCQKAPSGLVTSCKAPFLVDQSQKLPAVPASSWKPP 433
>gi|223468705 5-hydroxytryptamine receptor 3 subunit D isoform 1
[Homo sapiens]
Length = 404
Score = 30.8 bits (68), Expect = 1.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 183 WTRDRRPHHGGVQRVCPQVPVRLPRGPGLSPPH 215
W H G R CP P + +GPGL+P H
Sbjct: 294 WLHSLLLHCTGQGRCCPTAPQKGNKGPGLTPTH 326
>gi|47519877 5-hydroxytryptamine receptor 3 subunit D isoform 2
[Homo sapiens]
Length = 279
Score = 30.8 bits (68), Expect = 1.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 183 WTRDRRPHHGGVQRVCPQVPVRLPRGPGLSPPH 215
W H G R CP P + +GPGL+P H
Sbjct: 169 WLHSLLLHCTGQGRCCPTAPQKGNKGPGLTPTH 201
>gi|47519913 5-hydroxytryptamine receptor 3 subunit E [Homo sapiens]
Length = 471
Score = 30.4 bits (67), Expect = 1.9
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 183 WTRDRRPHHGGVQRVCPQVPVRLPRGPGLSPPHCSPCGLPQHCSSHLLKPVSSK 236
W H R CP P + +GPGL+P H P+ + + P ++
Sbjct: 361 WLHSLLLHCNSPGRCCPTAPQKENKGPGLTPTHLPGVKEPEVSAGQMPGPAEAE 414
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,148,640
Number of Sequences: 37866
Number of extensions: 736333
Number of successful extensions: 2795
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2738
Number of HSP's gapped (non-prelim): 80
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.