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Search of human proteins with 56682938
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56682938 A kinase (PRKA) anchor protein 14 isoform b [Homo
sapiens]
(137 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56682938 A kinase (PRKA) anchor protein 14 isoform b [Homo sa... 279 4e-76
gi|30520346 A kinase (PRKA) anchor protein 14 isoform a [Homo sa... 208 1e-54
gi|56682940 A kinase (PRKA) anchor protein 14 isoform c [Homo sa... 176 7e-45
gi|164663830 FGGY carbohydrate kinase domain containing isoform ... 31 0.28
gi|164663828 FGGY carbohydrate kinase domain containing isoform ... 31 0.28
gi|166362737 erythrocyte membrane protein band 4.2 isoform 2 [Ho... 30 0.48
gi|166362735 erythrocyte membrane protein band 4.2 isoform 1 [Ho... 30 0.48
gi|225579078 retinol dehydrogenase 13 isoform 1 [Homo sapiens] 28 1.8
gi|19923931 retinol dehydrogenase 13 isoform 2 [Homo sapiens] 28 1.8
gi|54633319 PDZ domain-containing guanine nucleotide exchange fa... 27 4.0
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 27 4.0
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 27 4.0
gi|153945715 myosin VC [Homo sapiens] 27 5.3
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 27 5.3
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 27 5.3
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 27 5.3
gi|45446749 kinesin family member 5A [Homo sapiens] 27 6.9
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 27 6.9
gi|208431757 KLRAQ motif containing 1 isoform 3 [Homo sapiens] 27 6.9
gi|24308420 KLRAQ motif containing 1 isoform 2 [Homo sapiens] 27 6.9
gi|208431754 KLRAQ motif containing 1 isoform 1 [Homo sapiens] 27 6.9
gi|87299628 biorientation of chromosomes in cell division 1-like... 26 9.0
>gi|56682938 A kinase (PRKA) anchor protein 14 isoform b [Homo
sapiens]
Length = 137
Score = 279 bits (714), Expect = 4e-76
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN
Sbjct: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
Query: 61 PLKNIKWMTHGEFTVEKGLKQIDEYFSDAPIVVSYVGDHQALVHRPGMVRFRENWQKNLT 120
PLKNIKWMTHGEFTVEKGLKQIDEYFSDAPIVVSYVGDHQALVHRPGMVRFRENWQKNLT
Sbjct: 61 PLKNIKWMTHGEFTVEKGLKQIDEYFSDAPIVVSYVGDHQALVHRPGMVRFRENWQKNLT 120
Query: 121 DAKYSFMESFPFLFNRV 137
DAKYSFMESFPFLFNRV
Sbjct: 121 DAKYSFMESFPFLFNRV 137
>gi|30520346 A kinase (PRKA) anchor protein 14 isoform a [Homo
sapiens]
Length = 197
Score = 208 bits (529), Expect = 1e-54
Identities = 124/197 (62%), Positives = 125/197 (63%), Gaps = 60/197 (30%)
Query: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN
Sbjct: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
Query: 61 PLKNI---------------------------KWMTHG-EFTVEKGLKQ----------- 81
PLKNI K HG EF K L
Sbjct: 61 PLKNIKWMTHGEFTVEKGLKQIDEYFSKCVSKKCWAHGVEFVERKDLIHSFLYIYYVHWS 120
Query: 82 ------------IDEYFS---------DAPIVVSYVGDHQALVHRPGMVRFRENWQKNLT 120
YF+ DAPIVVSYVGDHQALVHRPGMVRFRENWQKNLT
Sbjct: 121 ISTADLPVARISAGTYFTMKVSKTKPPDAPIVVSYVGDHQALVHRPGMVRFRENWQKNLT 180
Query: 121 DAKYSFMESFPFLFNRV 137
DAKYSFMESFPFLFNRV
Sbjct: 181 DAKYSFMESFPFLFNRV 197
>gi|56682940 A kinase (PRKA) anchor protein 14 isoform c [Homo
sapiens]
Length = 89
Score = 176 bits (445), Expect = 7e-45
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN
Sbjct: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
Query: 61 PLKNIKWMTHGEFTVEKGLKQIDEYFS 87
PLKNIKWMTHGEFTVEKGLKQIDEYFS
Sbjct: 61 PLKNIKWMTHGEFTVEKGLKQIDEYFS 87
>gi|164663830 FGGY carbohydrate kinase domain containing isoform a
[Homo sapiens]
Length = 575
Score = 31.2 bits (69), Expect = 0.28
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 10 QKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINY 50
Q+AM + +K P QDK Y D+ QV L LVE Y
Sbjct: 528 QEAMAKMSKVGKVVFPRLQDKKYYDKKYQVFLKLVEHQKEY 568
>gi|164663828 FGGY carbohydrate kinase domain containing isoform b
[Homo sapiens]
Length = 551
Score = 31.2 bits (69), Expect = 0.28
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 10 QKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINY 50
Q+AM + +K P QDK Y D+ QV L LVE Y
Sbjct: 504 QEAMAKMSKVGKVVFPRLQDKKYYDKKYQVFLKLVEHQKEY 544
>gi|166362737 erythrocyte membrane protein band 4.2 isoform 2 [Homo
sapiens]
Length = 691
Score = 30.4 bits (67), Expect = 0.48
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 88 DAPI---VVSYVGDHQALVHRPGMVRFRENWQKNLTDAKYSF 126
DAP+ V+S +G + L+HR RFR W +N AK+ F
Sbjct: 615 DAPMEDCVISILG--RGLIHRERSYRFRSVWPENTMCAKFQF 654
>gi|166362735 erythrocyte membrane protein band 4.2 isoform 1 [Homo
sapiens]
Length = 721
Score = 30.4 bits (67), Expect = 0.48
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 88 DAPI---VVSYVGDHQALVHRPGMVRFRENWQKNLTDAKYSF 126
DAP+ V+S +G + L+HR RFR W +N AK+ F
Sbjct: 645 DAPMEDCVISILG--RGLIHRERSYRFRSVWPENTMCAKFQF 684
>gi|225579078 retinol dehydrogenase 13 isoform 1 [Homo sapiens]
Length = 331
Score = 28.5 bits (62), Expect = 1.8
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 23/119 (19%)
Query: 31 NYEDELTQVALALVEDVINYAVKIVEEER---------NPLKNIKWMTHGEFTVEKGLKQ 81
N+ + LA ++ + +A KI+EEE ++ W T F ++ G+
Sbjct: 88 NHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNH 147
Query: 82 ----------IDEYFSDAPIVVSYVGDHQALVHRPGMVRFRE-NWQKNLTDAKYSFMES 129
+D+ + AP S + + +L H G + F + NWQ + K ++ +S
Sbjct: 148 LGHFLLTNLLLDKLKASAP---SRIINLSSLAHVAGHIDFDDLNWQTRKYNTKAAYCQS 203
>gi|19923931 retinol dehydrogenase 13 isoform 2 [Homo sapiens]
Length = 260
Score = 28.5 bits (62), Expect = 1.8
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 23/119 (19%)
Query: 31 NYEDELTQVALALVEDVINYAVKIVEEER---------NPLKNIKWMTHGEFTVEKGLKQ 81
N+ + LA ++ + +A KI+EEE ++ W T F ++ G+
Sbjct: 17 NHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNH 76
Query: 82 ----------IDEYFSDAPIVVSYVGDHQALVHRPGMVRFRE-NWQKNLTDAKYSFMES 129
+D+ + AP S + + +L H G + F + NWQ + K ++ +S
Sbjct: 77 LGHFLLTNLLLDKLKASAP---SRIINLSSLAHVAGHIDFDDLNWQTRKYNTKAAYCQS 132
>gi|54633319 PDZ domain-containing guanine nucleotide exchange
factor I [Homo sapiens]
Length = 1601
Score = 27.3 bits (59), Expect = 4.0
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 65 IKWMTHGEFTVEKGLKQIDEYFSDA------PIVVSYVGDH-QALVHRPGMVRFRENWQK 117
+ + T E ++ G+K ++ + D+ IV+ +V +H P M RF E ++K
Sbjct: 445 LTYRTFLESPLDVGIKLLEWFKIDSLRDKVTRIVLLWVNNHFNDFEGDPAMTRFLEEFEK 504
Query: 118 NLTDAK 123
NL D K
Sbjct: 505 NLEDTK 510
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 27.3 bits (59), Expect = 4.0
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 53 KIVEEERNPLKNIKWMTHGE-FTVEKGLKQIDEYFSDAPIVVSYVGDHQALVHRPGMVRF 111
K + + LK + E T+EKGL E+ + ++ ++Q ++H P +
Sbjct: 3773 KEIHDHMEQLKELTSTVRKEHMTLEKGLHLAKEFSDKCKALTQWIAEYQEILHVPEEPKM 3832
Query: 112 RENWQKNLTDAKYSFME 128
E ++K +KY ++
Sbjct: 3833 -ELYEKKAQLSKYKSLQ 3848
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 27.3 bits (59), Expect = 4.0
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 53 KIVEEERNPLKNIKWMTHGE-FTVEKGLKQIDEYFSDAPIVVSYVGDHQALVHRPGMVRF 111
K + + LK + E T+EKGL E+ + ++ ++Q ++H P +
Sbjct: 3788 KEIHDHMEQLKELTSTVRKEHMTLEKGLHLAKEFSDKCKALTQWIAEYQEILHVPEEPKM 3847
Query: 112 RENWQKNLTDAKYSFME 128
E ++K +KY ++
Sbjct: 3848 -ELYEKKAQLSKYKSLQ 3863
>gi|153945715 myosin VC [Homo sapiens]
Length = 1742
Score = 26.9 bits (58), Expect = 5.3
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 49 NYAVKIVEEERNPLKNIKWMTHGEFTVEKGLKQIDEYFSDAP------IVVSY--VGDHQ 100
N + +E PL W+ + T + K+I E + I+ SY + D +
Sbjct: 1621 NLQNSLAKETLEPLSQAAWLLQVKKTTDSDAKEIYERCTSLSAVQIIKILNSYTPIDDFE 1680
Query: 101 ALVHRPGMVR-------FRENWQKNLTDAKYSFMESFPF 132
V P VR RE+ + + D KY F +FPF
Sbjct: 1681 KRV-TPSFVRKVQALLNSREDSSQLMLDTKYLFQVTFPF 1718
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 26.9 bits (58), Expect = 5.3
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 5 QNSTSQKAMDEDNKAASQTMPNTQDKNYEDE 35
+ S+ K +D+DN++ S ++P+ QD + +
Sbjct: 142 EGSSDPKDIDQDNRSTSPSIPSPQDNESDSD 172
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 26.9 bits (58), Expect = 5.3
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 5 QNSTSQKAMDEDNKAASQTMPNTQDKNYEDE 35
+ S+ K +D+DN++ S ++P+ QD + +
Sbjct: 696 EGSSDPKDIDQDNRSTSPSIPSPQDNESDSD 726
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 26.9 bits (58), Expect = 5.3
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 5 QNSTSQKAMDEDNKAASQTMPNTQDKNYEDE 35
+ S+ K +D+DN++ S ++P+ QD + +
Sbjct: 696 EGSSDPKDIDQDNRSTSPSIPSPQDNESDSD 726
>gi|45446749 kinesin family member 5A [Homo sapiens]
Length = 1032
Score = 26.6 bits (57), Expect = 6.9
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 16 DNKAASQTMPNTQDKN--YEDELTQVALALVEDVINYAVKIVEEERNPLKN 64
DN+ + + + Q +N +DE+ +V AL E +NY K E E +N
Sbjct: 462 DNEKVQRELSHLQSENDAAKDEVKEVLQALEELAVNYDQKSQEVEEKSQQN 512
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 26.6 bits (57), Expect = 6.9
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 55 VEEERNPLKNIKWMTHGEFTVEKGLKQIDEYFSDAPIVV----SYVGDHQALVHRPGMVR 110
+++ PLK +K F+V++GL F+ + V S GD ++ G +
Sbjct: 576 IKDTSIPLKILK------FSVDEGLTWSTHNFTSTSVFVDGLLSEPGDETLVMTVFGHIS 629
Query: 111 FRENWQKNLTDAKYSF 126
FR +W+ D + SF
Sbjct: 630 FRSDWELVKVDFRPSF 645
>gi|208431757 KLRAQ motif containing 1 isoform 3 [Homo sapiens]
Length = 734
Score = 26.6 bits (57), Expect = 6.9
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 9 SQKAMDEDNKAASQTMPNTQD------KNYEDELTQVALALVEDVINYAVKIVEEERNPL 62
S++A+ E+ K ASQ + QD ++YED+L+ ++ L +N + EE + L
Sbjct: 663 SKEALTEEMKLASQNISRLQDELTTTKRSYEDQLSMMSDHLCS--MNETLSKQREEIDTL 720
Query: 63 K 63
K
Sbjct: 721 K 721
>gi|24308420 KLRAQ motif containing 1 isoform 2 [Homo sapiens]
Length = 769
Score = 26.6 bits (57), Expect = 6.9
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 9 SQKAMDEDNKAASQTMPNTQD------KNYEDELTQVALALVEDVINYAVKIVEEERNPL 62
S++A+ E+ K ASQ + QD ++YED+L+ ++ L +N + EE + L
Sbjct: 698 SKEALTEEMKLASQNISRLQDELTTTKRSYEDQLSMMSDHLCS--MNETLSKQREEIDTL 755
Query: 63 K 63
K
Sbjct: 756 K 756
>gi|208431754 KLRAQ motif containing 1 isoform 1 [Homo sapiens]
Length = 780
Score = 26.6 bits (57), Expect = 6.9
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 9 SQKAMDEDNKAASQTMPNTQD------KNYEDELTQVALALVEDVINYAVKIVEEERNPL 62
S++A+ E+ K ASQ + QD ++YED+L+ ++ L +N + EE + L
Sbjct: 709 SKEALTEEMKLASQNISRLQDELTTTKRSYEDQLSMMSDHLCS--MNETLSKQREEIDTL 766
Query: 63 K 63
K
Sbjct: 767 K 767
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 26.2 bits (56), Expect = 9.0
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 2 SETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERNP 61
SET ++TS+ ++D ++S+T ++N +D +K EE++
Sbjct: 2826 SETNSTTSRVMEEKDEYSSSETTGEKPEQNDDD----------------TIKSQEEDQPI 2869
Query: 62 LKNIKWMTHGEFTVEKGLKQIDEYFSDAPIV 92
+ K ++ VE LK D+ +D IV
Sbjct: 2870 IIKRKRGRPRKYPVETTLKMKDDSKTDTGIV 2900
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,728,130
Number of Sequences: 37866
Number of extensions: 177297
Number of successful extensions: 378
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 23
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.