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Search of human proteins with 56676371
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56676371 cleavage and polyadenylation specific factor 1,
160kDa [Homo sapiens]
(1443 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56676371 cleavage and polyadenylation specific factor 1, 160k... 2899 0.0
gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo ... 85 4e-16
gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens] 85 4e-16
gi|54112121 splicing factor 3b, subunit 3 [Homo sapiens] 77 2e-13
gi|7657166 homeobox C11 [Homo sapiens] 36 0.31
gi|222352177 nuclear factor of kappa light polypeptide gene enha... 33 2.0
gi|222352179 nuclear factor of kappa light polypeptide gene enha... 33 2.0
gi|222352175 nuclear factor of kappa light polypeptide gene enha... 33 2.0
gi|222352173 nuclear factor of kappa light polypeptide gene enha... 33 2.0
gi|71040111 fibromodulin precursor [Homo sapiens] 33 2.6
gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens] 32 3.4
gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens] 32 3.4
gi|126091130 Gab3 protein isoform 1 [Homo sapiens] 32 3.4
gi|18079323 Gab3 protein isoform 2 [Homo sapiens] 32 3.4
gi|4759144 solute carrier family 9 (sodium/hydrogen exchanger), ... 32 4.4
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 32 4.4
gi|33946313 ninein isoform 4 [Homo sapiens] 32 5.8
gi|33946321 ninein isoform 5 [Homo sapiens] 32 5.8
gi|148536871 ninein isoform 1 [Homo sapiens] 32 5.8
gi|148536869 ninein isoform 2 [Homo sapiens] 32 5.8
gi|226437579 NAC alpha domain containing [Homo sapiens] 31 7.5
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 7.5
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 7.5
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 7.5
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 7.5
>gi|56676371 cleavage and polyadenylation specific factor 1, 160kDa
[Homo sapiens]
Length = 1443
Score = 2899 bits (7515), Expect = 0.0
Identities = 1443/1443 (100%), Positives = 1443/1443 (100%)
Query: 1 MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGK 60
MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGK
Sbjct: 1 MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGK 60
Query: 61 AHREKLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL 120
AHREKLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
Sbjct: 61 AHREKLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL 120
Query: 121 HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEG 180
HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEG
Sbjct: 121 HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEG 180
Query: 181 QRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI 240
QRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI
Sbjct: 181 QRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI 240
Query: 241 VAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVAL 300
VAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVAL
Sbjct: 241 VAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVAL 300
Query: 301 NSLTTGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAF 360
NSLTTGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAF
Sbjct: 301 NSLTTGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAF 360
Query: 361 HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSK 420
HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSK
Sbjct: 361 HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSK 420
Query: 421 KKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAV 480
KKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAV
Sbjct: 421 KKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAV 480
Query: 481 GEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIA 540
GEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIA
Sbjct: 481 GEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIA 540
Query: 541 PVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGF 600
PVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGF
Sbjct: 541 PVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGF 600
Query: 601 ATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMS 660
ATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMS
Sbjct: 601 ATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMS 660
Query: 661 AEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCLYRDLSGMFTTESRLGGARDE 720
AEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCLYRDLSGMFTTESRLGGARDE
Sbjct: 661 AEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCLYRDLSGMFTTESRLGGARDE 720
Query: 721 LGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRAE 780
LGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRAE
Sbjct: 721 LGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRAE 780
Query: 781 PTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARREEATRQ 840
PTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARREEATRQ
Sbjct: 781 PTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARREEATRQ 840
Query: 841 GELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNIN 900
GELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNIN
Sbjct: 841 GELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNIN 900
Query: 901 FREKKPKPSKKKAEGGGAEEGAGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGA 960
FREKKPKPSKKKAEGGGAEEGAGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGA
Sbjct: 901 FREKKPKPSKKKAEGGGAEEGAGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGA 960
Query: 961 LRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRC 1020
LRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRC
Sbjct: 961 LRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRC 1020
Query: 1021 TAHYVAYHVESKVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQQEAFSIQLIS 1080
TAHYVAYHVESKVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQQEAFSIQLIS
Sbjct: 1021 TAHYVAYHVESKVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQQEAFSIQLIS 1080
Query: 1081 PVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRIL 1140
PVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRIL
Sbjct: 1081 PVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRIL 1140
Query: 1141 IMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASEL 1200
IMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASEL
Sbjct: 1141 IMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASEL 1200
Query: 1201 TGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDF 1260
TGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDF
Sbjct: 1201 TGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDF 1260
Query: 1261 MVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAT 1320
MVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAT
Sbjct: 1261 MVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAT 1320
Query: 1321 EGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRA 1380
EGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRA
Sbjct: 1321 EGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRA 1380
Query: 1381 FRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRVT 1440
FRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRVT
Sbjct: 1381 FRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRVT 1440
Query: 1441 AHF 1443
AHF
Sbjct: 1441 AHF 1443
>gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo
sapiens]
Length = 1140
Score = 85.1 bits (209), Expect = 4e-16
Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 34/327 (10%)
Query: 1120 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1178
Y GT ++ EE + GRI++ + K + + EKE KG V ++
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGAVYSMVEF 876
Query: 1179 NGHLVSAIGQ--KIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRY 1236
NG L+++I +++ W+ T + + ++ + + +FIL D+M+S+ LL Y
Sbjct: 877 NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALY-LKTKGDFILVGDLMRSVLLLAY 935
Query: 1237 QEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRL 1296
+ ++RD P + +V+ + D+ FL ++ NL V A L
Sbjct: 936 KPMEGNFEEIARDFNPNWMSAVEILDDD---NFLGAENAFNLFVCQKDSAATTDEERQHL 992
Query: 1297 LRRADFHVGAHVNTFWRTPCRGAT--EGLSKKSVVWENKHITWFATLDGGIGLLLPMQEK 1354
FH+G VN F C G+ + L + S + + F T++G IGL+ + E
Sbjct: 993 QEVGLFHLGEFVNVF----CHGSLVMQNLGETSTPTQGSVL--FGTVNGMIGLVTSLSES 1046
Query: 1355 TYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTME 1414
Y LL +QN L ++ + +R H +R+T +DG+L+ +L +S +
Sbjct: 1047 WYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKT--EPATGFIDGDLIESFLDISRPK 1104
Query: 1415 RSELAKKI------GTTPDIILDDLLE 1435
E+ + G + DDL++
Sbjct: 1105 MQEVVANLQYDDGSGMKREATADDLIK 1131
Score = 53.5 bits (127), Expect = 1e-06
Identities = 70/395 (17%), Positives = 154/395 (38%), Gaps = 75/395 (18%)
Query: 8 AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREKLE 67
A PT + + +F + + NL++A ++L +Y + E L
Sbjct: 9 AQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTA------------------EGLR 50
Query: 68 LAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPE 127
+G + M + G +D L + ++EY + ++ +
Sbjct: 51 PVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAH---GN 107
Query: 128 LRDGFVQNVHTPRVRV-DPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEGQRSSFL 186
++D + T + + DP+ R + +Y V+P R++
Sbjct: 108 VQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNK----------------- 150
Query: 187 PSYIIDVRALDEKL--LNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAIS 244
+++A + +L L++ID++FL+G PT+ +++ Q GR + +S
Sbjct: 151 -----ELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQ---GRHVKTYE------VS 196
Query: 245 LNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLT 304
L ++ + W ++ + + +AVP+P GG ++ S+ Y N
Sbjct: 197 LR-EKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN-------------- 241
Query: 305 TGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTL----ITDGMRSVRAF 360
G + + T+ C + + ++ G +++L L DG +++
Sbjct: 242 -GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300
Query: 361 HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLK 395
+ + + + ++ G +F+GSRLG+S L+K
Sbjct: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVK 335
Score = 48.5 bits (114), Expect = 5e-05
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 36/164 (21%)
Query: 467 DSILNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTT 526
++ N+GP + V + L + Q ++V CSG K G+L +++ I +
Sbjct: 351 ETFTNLGPIVDMCVVD---LERQGQG------QLVTCSGAFKEGSLRIIRNGIGIHEHAS 401
Query: 527 FELPGCYDMWTVIAPVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMIL 586
+LPG +W + + +E +D L+LS T +L
Sbjct: 402 IDLPGIKGLWPLRSDPNRETDDT-------------------------LVLSFVGQTRVL 436
Query: 587 Q-TGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLL 629
G+E+ E + GF T F GN+ ++ ++Q++ +RL+
Sbjct: 437 MLNGEEVEETELMGFVDDQQTFFCGNVA-HQQLIQITSASVRLV 479
>gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens]
Length = 1140
Score = 85.1 bits (209), Expect = 4e-16
Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 34/327 (10%)
Query: 1120 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1178
Y GT ++ EE + GRI++ + K + + EKE KG V ++
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGAVYSMVEF 876
Query: 1179 NGHLVSAIGQ--KIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRY 1236
NG L+++I +++ W+ T + + ++ + + +FIL D+M+S+ LL Y
Sbjct: 877 NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALY-LKTKGDFILVGDLMRSVLLLAY 935
Query: 1237 QEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRL 1296
+ ++RD P + +V+ + D+ FL ++ NL V A L
Sbjct: 936 KPMEGNFEEIARDFNPNWMSAVEILDDD---NFLGAENAFNLFVCQKDSAATTDEERQHL 992
Query: 1297 LRRADFHVGAHVNTFWRTPCRGAT--EGLSKKSVVWENKHITWFATLDGGIGLLLPMQEK 1354
FH+G VN F C G+ + L + S + + F T++G IGL+ + E
Sbjct: 993 QEVGLFHLGEFVNVF----CHGSLVMQNLGETSTPTQGSVL--FGTVNGMIGLVTSLSES 1046
Query: 1355 TYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTME 1414
Y LL +QN L ++ + +R H +R+T +DG+L+ +L +S +
Sbjct: 1047 WYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKT--EPATGFIDGDLIESFLDISRPK 1104
Query: 1415 RSELAKKI------GTTPDIILDDLLE 1435
E+ + G + DDL++
Sbjct: 1105 MQEVVANLQYDDGSGMKREATADDLIK 1131
Score = 53.5 bits (127), Expect = 1e-06
Identities = 70/395 (17%), Positives = 154/395 (38%), Gaps = 75/395 (18%)
Query: 8 AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREKLE 67
A PT + + +F + + NL++A ++L +Y + E L
Sbjct: 9 AQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTA------------------EGLR 50
Query: 68 LAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPE 127
+G + M + G +D L + ++EY + ++ +
Sbjct: 51 PVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAH---GN 107
Query: 128 LRDGFVQNVHTPRVRV-DPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEGQRSSFL 186
++D + T + + DP+ R + +Y V+P R++
Sbjct: 108 VQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNK----------------- 150
Query: 187 PSYIIDVRALDEKL--LNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAIS 244
+++A + +L L++ID++FL+G PT+ +++ Q GR + +S
Sbjct: 151 -----ELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQ---GRHVKTYE------VS 196
Query: 245 LNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLT 304
L ++ + W ++ + + +AVP+P GG ++ S+ Y N
Sbjct: 197 LR-EKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN-------------- 241
Query: 305 TGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTL----ITDGMRSVRAF 360
G + + T+ C + + ++ G +++L L DG +++
Sbjct: 242 -GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300
Query: 361 HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLK 395
+ + + + ++ G +F+GSRLG+S L+K
Sbjct: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVK 335
Score = 48.5 bits (114), Expect = 5e-05
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 36/164 (21%)
Query: 467 DSILNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTT 526
++ N+GP + V + L + Q ++V CSG K G+L +++ I +
Sbjct: 351 ETFTNLGPIVDMCVVD---LERQGQG------QLVTCSGAFKEGSLRIIRNGIGIHEHAS 401
Query: 527 FELPGCYDMWTVIAPVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMIL 586
+LPG +W + + +E +D L+LS T +L
Sbjct: 402 IDLPGIKGLWPLRSDPNRETDDT-------------------------LVLSFVGQTRVL 436
Query: 587 Q-TGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLL 629
G+E+ E + GF T F GN+ ++ ++Q++ +RL+
Sbjct: 437 MLNGEEVEETELMGFVDDQQTFFCGNVA-HQQLIQITSASVRLV 479
>gi|54112121 splicing factor 3b, subunit 3 [Homo sapiens]
Length = 1217
Score = 76.6 bits (187), Expect = 2e-13
Identities = 136/667 (20%), Positives = 249/667 (37%), Gaps = 122/667 (18%)
Query: 12 TGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREKLELAAS 71
TG+ F+++ NF ++ +VV+ L L + D +T GK H +
Sbjct: 12 TGISFAIHGNFSGTKQQEIVVSRGKIL----------ELLRPDPNT-GKVHT-----LLT 55
Query: 72 FSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDG 131
FG + S+ + +L G +D +++ ++ ++EY P + + + F + G
Sbjct: 56 VEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFG----KSG 111
Query: 132 FVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEGQRSSFLPSYII 191
+ V + VDP GR + + +V R++ A E +++ L +++
Sbjct: 112 CRRIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVV 171
Query: 192 DVRA-LDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVR-QDTCSIVAISLNITQ 249
V + + +++ + +PT G A Q T + + L +
Sbjct: 172 GVDVGFENPMFACLEMDYEEADNDPT------------GEAAANTQQTLTFYELDLGLNH 219
Query: 250 KVHPVIWSLTSLPFDCTQALAVPKPIG-----GVVVFAVNSLLYLNQSVPPYGVALNSLT 304
V S P + + P G GV++ + N + Y N P
Sbjct: 220 VVRKY-----SEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRR 274
Query: 305 TGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDG--MRSVRAFHF 362
P R V ++ F + + G+I+ +TL TD + +R +F
Sbjct: 275 RNDLDDPERGMIFVCSATHKTKSMFF----FLAQTEQGDIFKITLETDEDMVTEIRLKYF 330
Query: 363 DKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKK 422
D + +M ++ G+LF+ S GN L + + D +E P
Sbjct: 331 DTVPVAA---AMCVLKTGFLFVASEFGNHYLYQ------------IAHLGDDDEEPE--- 372
Query: 423 RVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAVGE 482
++P +E D ++ + D + ++ P + +
Sbjct: 373 ----------FSSAMPLEEGDTFFFQPRPLKN--------LVLVDELDSLSPILFCQIAD 414
Query: 483 PAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYD-MWTVIAP 541
A N P L V G G +L VL+ + + ELPG + +WTV
Sbjct: 415 LA-------NEDTPQL--YVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTV--- 462
Query: 542 VRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGFA 601
R+ ED E D ++I+S ++T++L G+ + E+ SGF
Sbjct: 463 -RRHIED---------------EFD------AYIIVSFVNATLVLSIGETVEEVTDSGFL 500
Query: 602 TQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMSA 661
PT+ +GD+ +VQV P GIR + +++ IV+CAV VVI
Sbjct: 501 GTTPTLSCSLLGDDA-LVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALT 559
Query: 662 EGHVTMF 668
G + F
Sbjct: 560 GGELVYF 566
Score = 41.6 bits (96), Expect = 0.006
Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 41/235 (17%)
Query: 1211 YIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFL 1270
YI + ++ + ++ +DV +S +RY+ L + + D P V + + + G
Sbjct: 989 YISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAG-- 1046
Query: 1271 VSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGATEGLSKKSVVW 1330
+D+ N+ V P + +A W RG G S+K+ V
Sbjct: 1047 -ADKFGNICVVRLPPNTNDEVDEDPTGNKA----------LWD---RGLLNGASQKAEVI 1092
Query: 1331 ENKHI-------------------TWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLP 1371
N H+ + TL GGIG+L+P ++ Q+ +
Sbjct: 1093 MNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFT--SHEDHDFFQHVEMHLRS 1150
Query: 1372 HHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTP 1426
H L R H+ R+ V+NV+DG+L ++ + ++ +++++ TP
Sbjct: 1151 EHPPLCGRD----HLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTP 1201
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 35.8 bits (81), Expect = 0.31
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 665 VTMFLLKSD-SYGGRHHRLALHKPPLHHQSKVITLCLYRDLSGMFTTESRLGGA------ 717
VT L+K++ SYGG HH A H P S V + F + GG
Sbjct: 110 VTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEP 169
Query: 718 -----RDELGGRSGPEAEGLGSETSPTVD---DEEEMLYGDSGSLFSPSKEEARRSSQPP 769
+ G P A GL S + +EE SGS S +KE A + + P
Sbjct: 170 PCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPA-KGAAPN 228
Query: 770 ADR 772
A R
Sbjct: 229 APR 231
>gi|222352177 nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor-like 1 isoform 3 [Homo
sapiens]
Length = 358
Score = 33.1 bits (74), Expect = 2.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 718 RDELGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEE--ARRSSQPPADRDPA 775
R+ G R P AEG S S +EE+ L+ + E ARR+ + DR+P
Sbjct: 195 REAEGSRRPPRAEG--SSQSWRQQEEEQRLFRERARAKEEELRESRARRAQEALGDREPK 252
Query: 776 PFRAEP 781
P RA P
Sbjct: 253 PTRAGP 258
>gi|222352179 nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor-like 1 isoform 4 [Homo
sapiens]
Length = 343
Score = 33.1 bits (74), Expect = 2.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 718 RDELGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEE--ARRSSQPPADRDPA 775
R+ G R P AEG S S +EE+ L+ + E ARR+ + DR+P
Sbjct: 180 REAEGSRRPPRAEG--SSQSWRQQEEEQRLFRERARAKEEELRESRARRAQEALGDREPK 237
Query: 776 PFRAEP 781
P RA P
Sbjct: 238 PTRAGP 243
>gi|222352175 nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor-like 1 isoform 2 [Homo
sapiens]
Length = 366
Score = 33.1 bits (74), Expect = 2.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 718 RDELGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEE--ARRSSQPPADRDPA 775
R+ G R P AEG S S +EE+ L+ + E ARR+ + DR+P
Sbjct: 203 REAEGSRRPPRAEG--SSQSWRQQEEEQRLFRERARAKEEELRESRARRAQEALGDREPK 260
Query: 776 PFRAEP 781
P RA P
Sbjct: 261 PTRAGP 266
>gi|222352173 nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor-like 1 isoform 1 [Homo
sapiens]
Length = 381
Score = 33.1 bits (74), Expect = 2.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 718 RDELGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEE--ARRSSQPPADRDPA 775
R+ G R P AEG S S +EE+ L+ + E ARR+ + DR+P
Sbjct: 218 REAEGSRRPPRAEG--SSQSWRQQEEEQRLFRERARAKEEELRESRARRAQEALGDREPK 275
Query: 776 PFRAEP 781
P RA P
Sbjct: 276 PTRAGP 281
>gi|71040111 fibromodulin precursor [Homo sapiens]
Length = 376
Score = 32.7 bits (73), Expect = 2.6
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1358 RLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSE 1417
RL + N LT M G PR+ R LH+D + N L+G LYL E E
Sbjct: 159 RLYLDHNNLTRM----PGPLPRSLRELHLDHNQISRVPNNALEGLENLTALYLQHNEIQE 214
Query: 1418 LAKKIGTTPDIILDDL 1433
+ + +IL DL
Sbjct: 215 VGSSMRGLRSLILLDL 230
>gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens]
Length = 520
Score = 32.3 bits (72), Expect = 3.4
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 725 SGPEAEGLGSETSPTV--DDEEEMLYGDSGSLFSPSKEEARRSSQPPA 770
S E E L SE S D+EEE LYGD + P +E A S+ PP+
Sbjct: 2 SAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENA--SANPPS 47
>gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens]
Length = 588
Score = 32.3 bits (72), Expect = 3.4
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 725 SGPEAEGLGSETSPTV--DDEEEMLYGDSGSLFSPSKEEARRSSQPPA 770
S E E L SE S D+EEE LYGD + P +E A S+ PP+
Sbjct: 2 SAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENA--SANPPS 47
>gi|126091130 Gab3 protein isoform 1 [Homo sapiens]
Length = 587
Score = 32.3 bits (72), Expect = 3.4
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 689 LHHQSKVITLCLYRDLSGMFTTESR-LGGARDELGGRSGPEAEGLGSETSPTVDDEEEML 747
L H+ K ++L L S M+ T S + + + ++G A GLG SP DD M
Sbjct: 364 LRHRDKRLSLNLPCRFSPMYPTASASIEDSYVPMSPQAG--ASGLGPHCSP--DDYIPM- 418
Query: 748 YGDSGSLFSPSKEEARRSSQPPADRDPAPFR 778
+SGS+ SP E PP +RD P R
Sbjct: 419 --NSGSISSPLPELPANLEPPPVNRDLKPQR 447
>gi|18079323 Gab3 protein isoform 2 [Homo sapiens]
Length = 586
Score = 32.3 bits (72), Expect = 3.4
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 689 LHHQSKVITLCLYRDLSGMFTTESR-LGGARDELGGRSGPEAEGLGSETSPTVDDEEEML 747
L H+ K ++L L S M+ T S + + + ++G A GLG SP DD M
Sbjct: 363 LRHRDKRLSLNLPCRFSPMYPTASASIEDSYVPMSPQAG--ASGLGPHCSP--DDYIPM- 417
Query: 748 YGDSGSLFSPSKEEARRSSQPPADRDPAPFR 778
+SGS+ SP E PP +RD P R
Sbjct: 418 --NSGSISSPLPELPANLEPPPVNRDLKPQR 446
>gi|4759144 solute carrier family 9 (sodium/hydrogen exchanger),
isoform 5 [Homo sapiens]
Length = 896
Score = 32.0 bits (71), Expect = 4.4
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 880 DSQLGQGNLKVR---FKKVPHNINFREKKPKPSK---KKAEGGGAEEGAGARGRVARFR 932
D ++ Q N+K R FK HNI F + KP+P K +K +G E + R F+
Sbjct: 633 DKEVFQQNMKRRLESFKSTKHNICFTKSKPRPRKTGRRKKDGVANAEATNGKHRGLGFQ 691
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 32.0 bits (71), Expect = 4.4
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 709 TTESRLGGARDELGGRSGPEAEGLGSETSPTVD---DEEEMLYGDSGSLFSPSKEEARRS 765
T E+ G DE+ + E+EG+ SE +D +EE + D L S S++ S
Sbjct: 2254 TNETATGDDGDEVFVEA--ESEGISSEAGLEIDSQQEEEPVQASDESDLPSTSQDPPSSS 2311
Query: 766 SQPPADRDPAPFR 778
S + P PFR
Sbjct: 2312 SVDTSSSQPKPFR 2324
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 31.6 bits (70), Expect = 5.8
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 24/91 (26%)
Query: 378 EPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKKRVDATAGW------- 430
+P Y+ G R G L ++ E ++E P V E D+E PS D + W
Sbjct: 101 QPKYVRGGKRYGRRSLPEFQESVEEFPEVTVIEPLDEEARPSHIPAGDCSEHWKTQRSEE 160
Query: 431 -----------------SAAGKSVPQDEVDE 444
S +G S PQD ++E
Sbjct: 161 YEAEGQLRFWNPDDLNASQSGSSPPQDWIEE 191
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 31.6 bits (70), Expect = 5.8
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 24/91 (26%)
Query: 378 EPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKKRVDATAGW------- 430
+P Y+ G R G L ++ E ++E P V E D+E PS D + W
Sbjct: 95 QPKYVRGGKRYGRRSLPEFQESVEEFPEVTVIEPLDEEARPSHIPAGDCSEHWKTQRSEE 154
Query: 431 -----------------SAAGKSVPQDEVDE 444
S +G S PQD ++E
Sbjct: 155 YEAEGQLRFWNPDDLNASQSGSSPPQDWIEE 185
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 31.6 bits (70), Expect = 5.8
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 24/91 (26%)
Query: 378 EPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKKRVDATAGW------- 430
+P Y+ G R G L ++ E ++E P V E D+E PS D + W
Sbjct: 95 QPKYVRGGKRYGRRSLPEFQESVEEFPEVTVIEPLDEEARPSHIPAGDCSEHWKTQRSEE 154
Query: 431 -----------------SAAGKSVPQDEVDE 444
S +G S PQD ++E
Sbjct: 155 YEAEGQLRFWNPDDLNASQSGSSPPQDWIEE 185
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 31.6 bits (70), Expect = 5.8
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 24/91 (26%)
Query: 378 EPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKKRVDATAGW------- 430
+P Y+ G R G L ++ E ++E P V E D+E PS D + W
Sbjct: 95 QPKYVRGGKRYGRRSLPEFQESVEEFPEVTVIEPLDEEARPSHIPAGDCSEHWKTQRSEE 154
Query: 431 -----------------SAAGKSVPQDEVDE 444
S +G S PQD ++E
Sbjct: 155 YEAEGQLRFWNPDDLNASQSGSSPPQDWIEE 185
>gi|226437579 NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 31.2 bits (69), Expect = 7.5
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 400 LQEPPASAVREAADKEEPPSKKKRVDATAGWSAAGKSVPQDEVDEI-EVYGSEAQSGTQL 458
LQ P V E A + P + ++ D+TAG +A ++PQ + I E+ G E+ + +L
Sbjct: 488 LQVAPGLQV-EVATRVTPQAGEEETDSTAGQESAAMAMPQPSQEGISEILGQESVTAEKL 546
Query: 459 AT 460
T
Sbjct: 547 PT 548
>gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 31.2 bits (69), Expect = 7.5
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 400 LQEPPASAVREAADKEEPPSKKKRVDATAGWSAAGKSVPQDEVDEI-EVYGSEAQSGTQL 458
LQ P V E A + P + ++ D+TAG +A ++PQ + I E+ G E+ + +L
Sbjct: 488 LQVAPGLQV-EVATRVTPQAGEEETDSTAGQESAAMAMPQPSQEGISEILGQESVTAEKL 546
Query: 459 AT 460
T
Sbjct: 547 PT 548
>gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 31.2 bits (69), Expect = 7.5
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 400 LQEPPASAVREAADKEEPPSKKKRVDATAGWSAAGKSVPQDEVDEI-EVYGSEAQSGTQL 458
LQ P V E A + P + ++ D+TAG +A ++PQ + I E+ G E+ + +L
Sbjct: 488 LQVAPGLQV-EVATRVTPQAGEEETDSTAGQESAAMAMPQPSQEGISEILGQESVTAEKL 546
Query: 459 AT 460
T
Sbjct: 547 PT 548
>gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 31.2 bits (69), Expect = 7.5
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 400 LQEPPASAVREAADKEEPPSKKKRVDATAGWSAAGKSVPQDEVDEI-EVYGSEAQSGTQL 458
LQ P V E A + P + ++ D+TAG +A ++PQ + I E+ G E+ + +L
Sbjct: 488 LQVAPGLQV-EVATRVTPQAGEEETDSTAGQESAAMAMPQPSQEGISEILGQESVTAEKL 546
Query: 459 AT 460
T
Sbjct: 547 PT 548
>gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 31.2 bits (69), Expect = 7.5
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 400 LQEPPASAVREAADKEEPPSKKKRVDATAGWSAAGKSVPQDEVDEI-EVYGSEAQSGTQL 458
LQ P V E A + P + ++ D+TAG +A ++PQ + I E+ G E+ + +L
Sbjct: 488 LQVAPGLQV-EVATRVTPQAGEEETDSTAGQESAAMAMPQPSQEGISEILGQESVTAEKL 546
Query: 459 AT 460
T
Sbjct: 547 PT 548
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,145,967
Number of Sequences: 37866
Number of extensions: 2664601
Number of successful extensions: 7170
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7119
Number of HSP's gapped (non-prelim): 55
length of query: 1443
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1328
effective length of database: 13,892,928
effective search space: 18449808384
effective search space used: 18449808384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.