Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DDB1 Sequence: fasta or formatted (1140aa) NCBI GI: 148529014
Description:

damage-specific DNA binding protein 1

Referenced in:

Cullins and SCF Complexes
DNases, Recombination, and DNA Repair
Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         59           2
 C cysteine            1.9         22           1
 D aspartate           4.8         55           3
 E glutamate           8.0         91           2
 F phenylalanine       4.0         46           2
 G glycine             7.2         82           2
 H histidine           2.5         28           1
 I isoleucine          6.3         72           3
 K lysine              4.7         54           2
 L leucine            11.0        125           3
 M methionine          2.4         27           1
 N asparagine          4.7         54           2
 P proline             3.6         41           2
 Q glutamine           4.1         47           2
 R arginine            4.2         48           1
 S serine              7.5         85           3
 T threonine           6.1         70           2
 V valine              8.0         91           3
 W tryptophan          0.7          8           1
 Y tyrosine            3.1         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   damage-specific DNA binding protein 1 
LOC100290337          1.000   PREDICTED: hypothetical protein XP_002347285 
SF3B3                 0.086   splicing factor 3b, subunit 3 
CPSF1                 0.027   cleavage and polyadenylation specific factor 1, 160k...
LOC729792             0.004   PREDICTED: hypothetical protein 
LOC729792             0.004   PREDICTED: hypothetical protein 
LOC729792             0.004   PREDICTED: hypothetical protein 
LOC100294501          0.004   PREDICTED: hypothetical protein 
LOC100294249          0.004   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.004   PREDICTED: hypothetical protein 
LOC100294204          0.004   PREDICTED: hypothetical protein 
LOC100294136          0.004   PREDICTED: hypothetical protein 
LOC100294091          0.004   PREDICTED: hypothetical protein 
LOC730401             0.004   PREDICTED: hypothetical protein 
RLIM                  0.003   ring finger protein, LIM domain interacting 
RLIM                  0.003   ring finger protein, LIM domain interacting 
PAFAH1B1              0.003   platelet-activating factor acetylhydrolase, isoform I...
SPATA21               0.003   spermatogenesis associated 21 
PREX1                 0.003   phosphatidylinositol-3,4,5-trisphosphate-dependent R...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press