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Search of human proteins with 55770906
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55770906 XPA binding protein 2 [Homo sapiens]
(855 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55770906 XPA binding protein 2 [Homo sapiens] 1727 0.0
gi|124256489 crooked neck-like 1 protein [Homo sapiens] 78 4e-14
gi|70980549 programmed cell death 11 [Homo sapiens] 59 2e-08
gi|169172639 PREDICTED: similar to U5 snRNP-associated 102 kDa p... 47 1e-04
gi|40807485 PRP6 pre-mRNA processing factor 6 homolog [Homo sapi... 47 1e-04
gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo... 40 0.012
gi|239757335 PREDICTED: chromosome 19 open reading frame 68 [Hom... 38 0.035
gi|239751835 PREDICTED: chromosome 19 open reading frame 68 [Hom... 38 0.035
gi|239746326 PREDICTED: hypothetical protein LOC374920 [Homo sap... 38 0.035
gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo s... 38 0.035
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 37 0.10
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do... 37 0.10
gi|221139761 zinc finger protein 853 [Homo sapiens] 36 0.13
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 36 0.17
gi|45439327 periplakin [Homo sapiens] 35 0.23
gi|41152097 DNA segment on chromosome X and Y (unique) 155 expre... 35 0.30
gi|94557295 mitogen-activated protein kinase 8 interacting prote... 35 0.30
gi|94557297 mitogen-activated protein kinase 8 interacting prote... 35 0.30
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens] 35 0.30
gi|115511012 coiled-coil domain containing 136 [Homo sapiens] 35 0.39
gi|4758648 kinesin family member 5B [Homo sapiens] 34 0.66
gi|198041734 kinesin light chain 2 isoform 1 [Homo sapiens] 33 0.86
gi|198041731 kinesin light chain 2 isoform 1 [Homo sapiens] 33 0.86
gi|12383062 kinesin light chain 2 isoform 1 [Homo sapiens] 33 0.86
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 33 1.1
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 33 1.1
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 33 1.1
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 33 1.1
gi|75709187 cleavage stimulation factor subunit 3 isoform 2 [Hom... 32 1.9
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 32 2.5
>gi|55770906 XPA binding protein 2 [Homo sapiens]
Length = 855
Score = 1727 bits (4472), Expect = 0.0
Identities = 855/855 (100%), Positives = 855/855 (100%)
Query: 1 MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA 60
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
Sbjct: 1 MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA 60
Query: 61 LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL 120
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
Sbjct: 61 LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL 120
Query: 121 MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA 180
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
Sbjct: 121 MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA 180
Query: 181 EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV 240
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
Sbjct: 181 EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV 240
Query: 241 DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA 300
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
Sbjct: 241 DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA 300
Query: 301 QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW 360
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
Sbjct: 301 QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW 360
Query: 361 HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK 420
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
Sbjct: 361 HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK 420
Query: 421 ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV 480
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV
Sbjct: 421 ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV 480
Query: 481 YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA 540
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
Sbjct: 481 YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA 540
Query: 541 YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA 600
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
Sbjct: 541 YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA 600
Query: 601 QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS 660
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
Sbjct: 601 QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS 660
Query: 661 DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI 720
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
Sbjct: 661 DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI 720
Query: 721 KEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA 780
KEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
Sbjct: 721 KEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA 780
Query: 781 AEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLE 840
AEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLE
Sbjct: 781 AEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLE 840
Query: 841 QQSVPAAVFGSLKED 855
QQSVPAAVFGSLKED
Sbjct: 841 QQSVPAAVFGSLKED 855
>gi|124256489 crooked neck-like 1 protein [Homo sapiens]
Length = 848
Score = 77.8 bits (190), Expect = 4e-14
Identities = 116/619 (18%), Positives = 233/619 (37%), Gaps = 114/619 (18%)
Query: 24 YEEEIMRNQFSVKCWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRY--LKARRA 80
+E+ I +N+ + W++Y ++++ + R +YERAL + + LW +Y ++ +
Sbjct: 231 FEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNR 290
Query: 81 QVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRAL 140
QV H N +RA + ++ + W Y G V R+ F+R +
Sbjct: 291 QVNH----------ARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQ 340
Query: 141 PITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRL 200
P + W Y+ F + + A Y RF+ + P+ + +I+Y + ++ A
Sbjct: 341 P---EEQAWHSYINFELRYKEVDRARTIYERFVLVHPD-VKNWIKYARFEEKHAYFAHAR 396
Query: 201 ATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWC 260
ER V G + L+
Sbjct: 397 KVY---ERAVEFFGDEHMD------------------------------------EHLYV 417
Query: 261 SLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGRE 320
+ A + FE+ R +Y+ A+ + + +D ++F +Y FE+ R
Sbjct: 418 AFAKFEENQKEFERVRVIYKYALDRI-SKQDAQELFKNYTIFEKKF----------GDRR 466
Query: 321 EEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW--HKRVALHQGRPREIINTY 378
+D+ + R ++E+ + + NPH+ W + R+ + Y
Sbjct: 467 GIEDIIVSKRRFQYEEEV------------KANPHNYDAWFDYLRLVESDAEAEAVREVY 514
Query: 379 TEAVQTVDPFKATGKPH-----TLWVAFAKFYE-DNGQLDDARVILEKATKVNFKQVDDL 432
A+ V P + K H LW+ +A + E + + R + + + ++ +
Sbjct: 515 ERAIANVPPIQE--KRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTF 572
Query: 433 ASVWCQCGELELRHENYDEALRLLRKATALPARRAEY------------FDGSEPVQNRV 480
A +W + E+R +N A R L + + + FD + +
Sbjct: 573 AKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKF 632
Query: 481 Y----KSLKVWSMLADLEESLGTFQSTKAVYD-RILDLRIATPQIV-INYAMFLEEHKYF 534
++ W A+LE LG +A+Y+ I R+ P+++ +Y F E +
Sbjct: 633 LEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEET 692
Query: 535 EESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQA---LDGCPPKY 591
E + Y R L + +W ++ ++ L + R ++E+A + C K
Sbjct: 693 ERTRNLYRR---LLQRTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKE 749
Query: 592 AKTLYL-LYAQLEEEWGLA 609
+ + L + EEE+G A
Sbjct: 750 ERLMLLESWRSFEEEFGTA 768
Score = 75.5 bits (184), Expect = 2e-13
Identities = 134/589 (22%), Positives = 228/589 (38%), Gaps = 127/589 (21%)
Query: 262 LADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREE 321
L DY +R R +E+ IR TV + YAQ+EES+ +++ A +
Sbjct: 220 LNDYKLRK------RKTFEDNIRKNRTV---ISNWIKYAQWEESL--KEIQRARSIYERA 268
Query: 322 ED----DVDLELRLARFE----QLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPRE 373
D ++ L L+ A E Q+ R + ++ P W+K + E
Sbjct: 269 LDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL--PRVNQFWYKYTYME-----E 321
Query: 374 IINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLA 433
++ A Q + + W ++ F ++D AR I E+ F V
Sbjct: 322 MLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYER-----FVLVHPDV 376
Query: 434 SVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADL 493
W + E +H + A ++ +A E+F G E + +Y + A
Sbjct: 377 KNWIKYARFEEKHAYFAHARKVYERAV-------EFF-GDEHMDEHLYVAF------AKF 422
Query: 494 EESLGTFQSTKAVYDRILDLRIA---TPQIVINYAMFLEEHKY----------------- 533
EE+ F+ + +Y LD RI+ ++ NY +F E K+
Sbjct: 423 EENQKEFERVRVIYKYALD-RISKQDAQELFKNYTIF--EKKFGDRRGIEDIIVSKRRFQ 479
Query: 534 FEESFKA---------------------------YERGISLFKWPNVSDIWSTYLTKFI- 565
+EE KA YER I+ W Y+ +I
Sbjct: 480 YEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWIN 539
Query: 566 ----ARYGGRKLERARDLFEQALDGCPPK---YAKTLYLLYAQLE---EEWGLARHAMAV 615
+ ER R +++ +L+ P K +AK +++LYAQ E + LAR A+
Sbjct: 540 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAK-MWILYAQFEIRQKNLSLARRALGT 598
Query: 616 YERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMC---LRFA 672
++ + +F +YI+ ++ R +Y+K +E E C ++FA
Sbjct: 599 ------SIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEF-----GPENCTSWIKFA 647
Query: 673 DMECKLGEIDRARAIYSFCSQICDPR--TTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSV 730
++E LG+IDRARAIY I PR W+++ DFE+ E+T + RR +
Sbjct: 648 ELETILGDIDRARAIYELA--ISQPRLDMPEVLWKSYIDFEIE--QEETERTRNLYRRLL 703
Query: 731 QATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQL 779
Q T + +V +Q SG + M+ E++ E+L
Sbjct: 704 QRTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERL 752
Score = 62.0 bits (149), Expect = 2e-09
Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 33/309 (10%)
Query: 14 DLVFEEEDLPYEEEIMRNQFSVKCWLRYIEF-KQGAPKPRLNQLYERALKLLPCSYK--- 69
D++ + YEEE+ N + W Y+ + A + ++YERA+ +P +
Sbjct: 470 DIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRH 529
Query: 70 ------LWYRYLKARRAQVKHRCVTDPAYE-DVNNCHERAFVFMHKMPRLWLDYCQFLMD 122
LW Y + K T Y+ + + F F ++W+ Y QF +
Sbjct: 530 WKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTF----AKMWILYAQFEIR 585
Query: 123 QGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEE 182
Q ++ RR ++ P ++++ +Y+ + + Y +FL+ PE+
Sbjct: 586 QKNLSLARRALGTSIGKCP---KNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTS 642
Query: 183 YIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQ-LWHELCDLISQNPDKVQSLNVD 241
+I++ + L + + A E +S+ + LW D + + ++ N
Sbjct: 643 WIKFAELETILGDIDRARAIY---ELAISQPRLDMPEVLWKSYIDFEIEQEETERTRN-- 697
Query: 242 AIIRGGLTRFTDQLGKLWCSLADYYIRS---GHFEKARDVYEEAIRTVMTVRDFTQ---V 295
+ R L R Q K+W S A + + S G K R +YEEA +T+ + + +
Sbjct: 698 -LYRRLLQR--TQHVKVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLML 754
Query: 296 FDSYAQFEE 304
+S+ FEE
Sbjct: 755 LESWRSFEE 763
>gi|70980549 programmed cell death 11 [Homo sapiens]
Length = 1871
Score = 58.5 bits (140), Expect = 2e-08
Identities = 57/264 (21%), Positives = 103/264 (39%), Gaps = 57/264 (21%)
Query: 397 LWVAFAKFYEDNGQLDDARVILEKATK-VNFKQVDDLASVWCQCGELELRHENYDEALRL 455
LW+ + F+ +++ AR + E+A K ++F++ + +VW LE + + + ++
Sbjct: 1621 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV 1680
Query: 456 LRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRI 515
+A +EP LKV+ LAD+ FQ +Y+R+L
Sbjct: 1681 FERAVQY----------NEP--------LKVFLHLADIYAKSEKFQEAGELYNRMLKRFR 1722
Query: 516 ATPQIVINYAMFLEEHKYFEESFKAYERGI------------------------------ 545
+ I Y FL S + +R +
Sbjct: 1723 QEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKA 1782
Query: 546 ----SLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALD-GCPPKYAKTLYLLYA 600
+L +P +D+WS Y+ I ++G +K RD+FE+ + PK K + Y
Sbjct: 1783 IFENTLSTYPKRTDVWSVYIDMTI-KHGSQK--DVRDIFERVIHLSLAPKRMKFFFKRYL 1839
Query: 601 QLEEEWGLARHAMAVYERATRAVE 624
E++ G + AV +A VE
Sbjct: 1840 DYEKQHGTEKDVQAVKAKALEYVE 1863
Score = 52.4 bits (124), Expect = 2e-06
Identities = 45/207 (21%), Positives = 89/207 (42%), Gaps = 39/207 (18%)
Query: 551 PNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAK---TLYLLYAQLEEEWG 607
PN S +W Y+ + ++E+AR + E+AL + + +++ LE +G
Sbjct: 1616 PNSSILWLQYMAFHLQ---ATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYG 1672
Query: 608 LARHAMAVYERATRAVEPAQQY-DMFNIYIK-----RAAEIYG----------------- 644
V+ERA + EP + + + +IY K A E+Y
Sbjct: 1673 SQESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYG 1732
Query: 645 --------VTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICD 696
+ + Q+A+E L + ++ +FA +E +LG+ +RA+AI+
Sbjct: 1733 AFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYP 1792
Query: 697 PRTTGAFWQTWKDFEVRHGNEDTIKEM 723
RT W + D ++HG++ ++++
Sbjct: 1793 KRTD--VWSVYIDMTIKHGSQKDVRDI 1817
Score = 46.2 bits (108), Expect = 1e-04
Identities = 48/240 (20%), Positives = 97/240 (40%), Gaps = 43/240 (17%)
Query: 482 KSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAY 541
+ L VW L +LE G+ +S V++R + ++ ++ A + + F+E+ + Y
Sbjct: 1656 EKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPL-KVFLHLADIYAKSEKFQEAGELY 1714
Query: 542 ERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQ 601
R + F+ +W Y + R R + ++AL+ P K + +AQ
Sbjct: 1715 NRMLKRFRQEKA--VWIKYGAFLLRRSQAAASHR---VLQRALECLPSKEHVDVIAKFAQ 1769
Query: 602 LEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSD 661
LE + G A A A++E T + P ++ D++++YI + R I+++ I +
Sbjct: 1770 LEFQLGDAERAKAIFEN-TLSTYP-KRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLS-- 1825
Query: 662 EHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIK 721
P+ F++ + D+E +HG E ++
Sbjct: 1826 ---------------------------------LAPKRMKFFFKRYLDYEKQHGTEKDVQ 1852
Score = 30.4 bits (67), Expect = 7.3
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 92 YEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQH 145
+++ + R + +W+ Y FL+ + + + R RAL LP +H
Sbjct: 1707 FQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEH 1760
>gi|169172639 PREDICTED: similar to U5 snRNP-associated 102 kDa
protein [Homo sapiens]
Length = 406
Score = 46.6 bits (109), Expect = 1e-04
Identities = 77/332 (23%), Positives = 134/332 (40%), Gaps = 41/332 (12%)
Query: 393 KPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEA 452
K LW+ AK G + AR IL A + N + +W +LE ++ Y+ A
Sbjct: 71 KAEVLWLMGAKSKWLAGDVPAARSILALAFQAN----PNSEEIWLAAVKLESENDEYERA 126
Query: 453 LRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILD 512
RLL KA + S P KS+K+ + ++ + + Y+
Sbjct: 127 RRLLAKARS-----------SAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPK 175
Query: 513 LRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRK 572
L + QI E+ + E++ +AY +G+ K P+ + +W L++ + G +
Sbjct: 176 LWMMKGQIE-------EQKEMMEKAREAYNQGLK--KCPHSTPLW-LLLSRLEEKIG--Q 223
Query: 573 LERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMF 632
L RAR + E++ P L+L +LE GL A + +A Q+
Sbjct: 224 LTRARAILEKSRLKNPKNPG--LWLESVRLEYRAGLKNIANTLMAKAL------QECPNS 275
Query: 633 NIYIKRAAEIYGVTHTRGIYQKAIEVLSD-EHAREMCLRFADMECKLGEIDRARAIYSFC 691
I A + R K+++ L EH + L A + +I +AR +
Sbjct: 276 GILWSEAIFLEARPQRR---TKSVDALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRT 332
Query: 692 SQICDPRTTGAFWQTWKDFEVRHGNEDTIKEM 723
+I G W + FE++HG E+ +E+
Sbjct: 333 VKI--DSDLGDAWAFFYKFELQHGTEEQQEEV 362
Score = 35.8 bits (81), Expect = 0.17
Identities = 59/240 (24%), Positives = 100/240 (41%), Gaps = 19/240 (7%)
Query: 479 RVYKSLK-VWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEES 537
+V+ S K VW A E++ GT +S +A+ R + P+ + + M + K+
Sbjct: 33 QVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV---AHCPKAEVLWLMGAKS-KWLAGD 88
Query: 538 FKAYERGISLFKW--PNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTL 595
A ++L PN +IW L + ERAR L +A P +
Sbjct: 89 VPAARSILALAFQANPNSEEIW---LAAVKLESENDEYERARRLLAKARSSAP---TARV 142
Query: 596 YLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKA 655
++ +LE R A + E A R E + M I+ E+ + R Y +
Sbjct: 143 FMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEM--MEKAREAYNQG 200
Query: 656 IEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHG 715
++ H+ + L + +E K+G++ RARAI S++ +P+ G W E R G
Sbjct: 201 LKKCP--HSTPLWLLLSRLEEKIGQLTRARAILE-KSRLKNPKNPG-LWLESVRLEYRAG 256
Score = 34.3 bits (77), Expect = 0.50
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 388 FKATGKPHTLWVAFAKFYEDNGQLDDARVILEKA------TKVNFKQV------DDLASV 435
F+A +W+A K +N + + AR +L KA +V K V D++ +
Sbjct: 100 FQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAA 159
Query: 436 WCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYK----SLKVWSMLA 491
C E LRH Y++ +L + ++ E + + N+ K S +W +L+
Sbjct: 160 QDLCEE-ALRH--YEDFPKLWMMKGQIEEQK-EMMEKAREAYNQGLKKCPHSTPLWLLLS 215
Query: 492 DLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLE----EHKYFEESFKAYERGISL 547
LEE +G +A+ ++ R+ P+ N ++LE E++ ++ +L
Sbjct: 216 RLEEKIGQLTRARAILEK---SRLKNPK---NPGLWLESVRLEYRAGLKNIANTLMAKAL 269
Query: 548 FKWPNVSDIWS 558
+ PN +WS
Sbjct: 270 QECPNSGILWS 280
Score = 32.7 bits (73), Expect = 1.5
Identities = 78/393 (19%), Positives = 140/393 (35%), Gaps = 42/393 (10%)
Query: 86 CVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQH 145
CV A E + A +WL F + G RA+ P +
Sbjct: 15 CVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAE- 73
Query: 146 SRIWPLYLRFLRSHPLPETAVRGYRRFLKLS----PESAEEYIEYLKSSDRLDE--AAQR 199
L+L +S L V R L L+ P S E ++ +K DE A+R
Sbjct: 74 ----VLWLMGAKSKWLAGD-VPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARR 128
Query: 200 LATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLW 259
L ++ + +L + + N Q L +A+ R + KLW
Sbjct: 129 LLAKARSSAPTARVFMKSVKL-----EWVQDNIRAAQDLCEEAL------RHYEDFPKLW 177
Query: 260 CSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESM----IAAKMETAS 315
+ EKAR+ Y + ++ T ++ ++ EE + A + S
Sbjct: 178 MMKGQIEEQKEMMEKAREAYNQGLK---KCPHSTPLWLLLSRLEEKIGQLTRARAILEKS 234
Query: 316 ELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREII 375
L + + LE + + L + L++ P+ W + + L + RP+
Sbjct: 235 RLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFL-EARPQR-- 291
Query: 376 NTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASV 435
T++V + K PH L +A AK + ++ AR + K++ DL
Sbjct: 292 --RTKSVDALK--KCEHDPHVL-LAVAKLFWSQRKITKAREWFHRTVKID----SDLGDA 342
Query: 436 WCQCGELELRHENYDEALRLLRKATALPARRAE 468
W + EL+H ++ + ++ + R E
Sbjct: 343 WAFFYKFELQHGTEEQQEEVRKRCESAEPRHGE 375
>gi|40807485 PRP6 pre-mRNA processing factor 6 homolog [Homo
sapiens]
Length = 941
Score = 46.6 bits (109), Expect = 1e-04
Identities = 77/332 (23%), Positives = 134/332 (40%), Gaps = 41/332 (12%)
Query: 393 KPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEA 452
K LW+ AK G + AR IL A + N + +W +LE ++ Y+ A
Sbjct: 606 KAEVLWLMGAKSKWLAGDVPAARSILALAFQAN----PNSEEIWLAAVKLESENDEYERA 661
Query: 453 LRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILD 512
RLL KA + S P KS+K+ + ++ + + Y+
Sbjct: 662 RRLLAKARS-----------SAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPK 710
Query: 513 LRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRK 572
L + QI E+ + E++ +AY +G+ K P+ + +W L++ + G +
Sbjct: 711 LWMMKGQIE-------EQKEMMEKAREAYNQGLK--KCPHSTPLW-LLLSRLEEKIG--Q 758
Query: 573 LERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMF 632
L RAR + E++ P L+L +LE GL A + +A Q+
Sbjct: 759 LTRARAILEKSRLKNPKNPG--LWLESVRLEYRAGLKNIANTLMAKAL------QECPNS 810
Query: 633 NIYIKRAAEIYGVTHTRGIYQKAIEVLSD-EHAREMCLRFADMECKLGEIDRARAIYSFC 691
I A + R K+++ L EH + L A + +I +AR +
Sbjct: 811 GILWSEAIFLEARPQRR---TKSVDALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRT 867
Query: 692 SQICDPRTTGAFWQTWKDFEVRHGNEDTIKEM 723
+I G W + FE++HG E+ +E+
Sbjct: 868 VKI--DSDLGDAWAFFYKFELQHGTEEQQEEV 897
Score = 39.3 bits (90), Expect = 0.016
Identities = 90/434 (20%), Positives = 176/434 (40%), Gaps = 55/434 (12%)
Query: 375 INTYTEAVQTVDPFKATGKPHT-LWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLA 433
IN +A + + T H W+A A+ E G+L AR ++ K T++ K D
Sbjct: 288 INDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSED--- 344
Query: 434 SVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADL 493
VW + L + D A ++ +A + +S++++ A+L
Sbjct: 345 -VWLEAARL----QPGDTAKAVVAQAV-----------------RHLPQSVRIYIRAAEL 382
Query: 494 EESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNV 553
E + ++ K V + L+ + + A+ LEE E++ R + P
Sbjct: 383 ETDI---RAKKRVLRKALE-HVPNSVRLWKAAVELEEP---EDARIMLSRAVEC--CPTS 433
Query: 554 SDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAM 613
++W +AR E AR + +A + P + +++ A+LEE G +
Sbjct: 434 VELWLA-----LARL--ETYENARKVLNKARENIPTD--RHIWITAAKLEEANGNTQMVE 484
Query: 614 AVYERATRAVEPAQQYDMFNIYIKRAAE---IYGVTHTRGIYQKAIEV-LSDEHAREMCL 669
+ +RA ++ +I+ A E V + + + I + + +E + +
Sbjct: 485 KIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWM 544
Query: 670 RFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRS 729
AD ++ ARAIY++ Q+ + + W FE HG ++++ +L +R+
Sbjct: 545 EDADSCVAHNALECARAIYAYALQVFPSKK--SVWLRAAYFEKNHGTRESLEALL--QRA 600
Query: 730 VQATYNTQVNFMASQMLK-VSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQP 788
V +V ++ K ++G S LA + + + A +L E+E D+
Sbjct: 601 VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKL--ESENDEY 658
Query: 789 LRAQSKILFVRSDA 802
RA+ + RS A
Sbjct: 659 ERARRLLAKARSSA 672
Score = 38.9 bits (89), Expect = 0.020
Identities = 103/465 (22%), Positives = 178/465 (38%), Gaps = 64/465 (13%)
Query: 266 YIRSGHFEKARDVYEEAIRTVMT-VRDFTQVFDSYAQFEESMIAAKMETASELGREEE-- 322
YIR+ E + +R + V + +++ + + EE A M L R E
Sbjct: 376 YIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIM-----LSRAVECC 430
Query: 323 -DDVDLELRLARFEQLISRRPLLLNSVLLRQN-PHHVHEWHKRVALHQGRPREIINTYTE 380
V+L L LAR E + R +L + R+N P H W L + N T+
Sbjct: 431 PTSVELWLALARLETYENARKVLNKA---RENIPTDRHIWITAAKLEEA------NGNTQ 481
Query: 381 AVQ-----TVDPFKATGKP--HTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLA 433
V+ + +A G W+ A+ + G + + ++ + ++ +D
Sbjct: 482 MVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEE-EDRK 540
Query: 434 SVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLK-VWSMLAD 492
W + + + H AL RA Y + V+ S K VW A
Sbjct: 541 HTWMEDADSCVAHN-------------ALECARAIYAYALQ-----VFPSKKSVWLRAAY 582
Query: 493 LEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW-- 550
E++ GT +S +A+ R + P+ + + M + K+ A ++L
Sbjct: 583 FEKNHGTRESLEALLQRAV---AHCPKAEVLWLMGAKS-KWLAGDVPAARSILALAFQAN 638
Query: 551 PNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLAR 610
PN +IW L + ERAR L +A P +++ +LE R
Sbjct: 639 PNSEEIW---LAAVKLESENDEYERARRLLAKARSSAP---TARVFMKSVKLEWVQDNIR 692
Query: 611 HAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLR 670
A + E A R E + M I+ E+ + R Y + ++ H+ + L
Sbjct: 693 AAQDLCEEALRHYEDFPKLWMMKGQIEEQKEM--MEKAREAYNQGLKKCP--HSTPLWLL 748
Query: 671 FADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHG 715
+ +E K+G++ RARAI S++ +P+ G W E R G
Sbjct: 749 LSRLEEKIGQLTRARAILE-KSRLKNPKNPG-LWLESVRLEYRAG 791
Score = 34.3 bits (77), Expect = 0.50
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 388 FKATGKPHTLWVAFAKFYEDNGQLDDARVILEKA------TKVNFKQV------DDLASV 435
F+A +W+A K +N + + AR +L KA +V K V D++ +
Sbjct: 635 FQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAA 694
Query: 436 WCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYK----SLKVWSMLA 491
C E LRH Y++ +L + ++ E + + N+ K S +W +L+
Sbjct: 695 QDLCEE-ALRH--YEDFPKLWMMKGQIEEQK-EMMEKAREAYNQGLKKCPHSTPLWLLLS 750
Query: 492 DLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLE----EHKYFEESFKAYERGISL 547
LEE +G +A+ ++ R+ P+ N ++LE E++ ++ +L
Sbjct: 751 RLEEKIGQLTRARAILEK---SRLKNPK---NPGLWLESVRLEYRAGLKNIANTLMAKAL 804
Query: 548 FKWPNVSDIWS 558
+ PN +WS
Sbjct: 805 QECPNSGILWS 815
Score = 32.7 bits (73), Expect = 1.5
Identities = 78/393 (19%), Positives = 140/393 (35%), Gaps = 42/393 (10%)
Query: 86 CVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQH 145
CV A E + A +WL F + G RA+ P +
Sbjct: 550 CVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAE- 608
Query: 146 SRIWPLYLRFLRSHPLPETAVRGYRRFLKLS----PESAEEYIEYLKSSDRLDE--AAQR 199
L+L +S L V R L L+ P S E ++ +K DE A+R
Sbjct: 609 ----VLWLMGAKSKWLAGD-VPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARR 663
Query: 200 LATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLW 259
L ++ + +L + + N Q L +A+ R + KLW
Sbjct: 664 LLAKARSSAPTARVFMKSVKL-----EWVQDNIRAAQDLCEEAL------RHYEDFPKLW 712
Query: 260 CSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESM----IAAKMETAS 315
+ EKAR+ Y + ++ T ++ ++ EE + A + S
Sbjct: 713 MMKGQIEEQKEMMEKAREAYNQGLK---KCPHSTPLWLLLSRLEEKIGQLTRARAILEKS 769
Query: 316 ELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREII 375
L + + LE + + L + L++ P+ W + + L + RP+
Sbjct: 770 RLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFL-EARPQR-- 826
Query: 376 NTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASV 435
T++V + K PH L +A AK + ++ AR + K++ DL
Sbjct: 827 --RTKSVDALK--KCEHDPHVL-LAVAKLFWSQRKITKAREWFHRTVKID----SDLGDA 877
Query: 436 WCQCGELELRHENYDEALRLLRKATALPARRAE 468
W + EL+H ++ + ++ + R E
Sbjct: 878 WAFFYKFELQHGTEEQQEEVRKRCESAEPRHGE 910
>gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo
sapiens]
Length = 717
Score = 39.7 bits (91), Expect = 0.012
Identities = 67/344 (19%), Positives = 124/344 (36%), Gaps = 76/344 (22%)
Query: 25 EEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKA------- 77
E+++ N + + W I Q P + + YER + P S + W Y++A
Sbjct: 22 EKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY 81
Query: 78 -RRAQVKHRCVTDPAYEDVNNCH------------------ERAFVF------MHKMP-R 111
+ ++ RC+ + D+ C+ +A+ F M M +
Sbjct: 82 DKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 141
Query: 112 LWLDYCQFL---------MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRF---LRSH 159
+W+DY FL + R+T RR + R P+ ++W Y ++ + H
Sbjct: 142 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC-VNPMINIEQLWRDYNKYEEGINIH 200
Query: 160 PLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQ 219
L + + R + A+EY +K D R A V + +A
Sbjct: 201 -LAKKMIEDRSRDYMNARRVAKEYETVMKGLD-------RNAPSVPPQNTPQEA--QQVD 250
Query: 220 LWHELCDLISQNPDKVQS------------------LNVDAIIRGGLTRFTDQLGKLWCS 261
+W + NP + + L I ++ +Q KL
Sbjct: 251 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 310
Query: 262 LADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEES 305
D ++A ++YE AI T++ + ++ +YA +EES
Sbjct: 311 KGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYEES 352
>gi|239757335 PREDICTED: chromosome 19 open reading frame 68 [Homo
sapiens]
Length = 578
Score = 38.1 bits (87), Expect = 0.035
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 150 PLYLRFLRSHPLPETA-VRGYRRFLKLSPESAEEY--IEYLKSSDRLDEA-AQRLATVVN 205
P LRF + L V+G R L PE A + + L R+ AQ L T+ +
Sbjct: 218 PSLLRFALASLLQSAPDVKGRVRCLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFS 277
Query: 206 DERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADY 265
+ + AG+ + LW LC L + + + G F D + W D
Sbjct: 278 KAQELGGAGREDPGLWSRLCRLAGASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDM 337
Query: 266 YIRSGHFEKARDV 278
++R FE ARD+
Sbjct: 338 WVRFRAFEAARDL 350
>gi|239751835 PREDICTED: chromosome 19 open reading frame 68 [Homo
sapiens]
Length = 578
Score = 38.1 bits (87), Expect = 0.035
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 150 PLYLRFLRSHPLPETA-VRGYRRFLKLSPESAEEY--IEYLKSSDRLDEA-AQRLATVVN 205
P LRF + L V+G R L PE A + + L R+ AQ L T+ +
Sbjct: 218 PSLLRFALASLLQSAPDVKGRVRCLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFS 277
Query: 206 DERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADY 265
+ + AG+ + LW LC L + + + G F D + W D
Sbjct: 278 KAQELGGAGREDPGLWSRLCRLAGASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDM 337
Query: 266 YIRSGHFEKARDV 278
++R FE ARD+
Sbjct: 338 WVRFRAFEAARDL 350
>gi|239746326 PREDICTED: hypothetical protein LOC374920 [Homo
sapiens]
Length = 578
Score = 38.1 bits (87), Expect = 0.035
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 150 PLYLRFLRSHPLPETA-VRGYRRFLKLSPESAEEY--IEYLKSSDRLDEA-AQRLATVVN 205
P LRF + L V+G R L PE A + + L R+ AQ L T+ +
Sbjct: 218 PSLLRFALASLLQSAPDVKGRVRCLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFS 277
Query: 206 DERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADY 265
+ + AG+ + LW LC L + + + G F D + W D
Sbjct: 278 KAQELGGAGREDPGLWSRLCRLAGASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDM 337
Query: 266 YIRSGHFEKARDV 278
++R FE ARD+
Sbjct: 338 WVRFRAFEAARDL 350
>gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo
sapiens]
Length = 669
Score = 38.1 bits (87), Expect = 0.035
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 19/152 (12%)
Query: 38 WLRY--IEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDV 95
W +Y +E + KP +++Y R L+ +P S LW Y+ + + DP +
Sbjct: 132 WKKYADLEKRHDNIKPS-DEVYRRGLQAIPLSVDLWIHYINFLKETL------DPGDPET 184
Query: 96 NNCHERAFVFM-------HKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRI 148
NN F + RLW Y + +QG + +DR L +P +S
Sbjct: 185 NNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRIL-GIPTQLYSHH 243
Query: 149 WPLYLRFLRSHPLPETAVRGYRRFLKLSPESA 180
+ + ++++ LP + G +F++L E A
Sbjct: 244 FQRFKEHVQNN-LPRDLLTG-EQFIQLRRELA 273
Score = 34.3 bits (77), Expect = 0.50
Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 30/144 (20%)
Query: 396 TLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRL 455
T WV ++ E L AR KA F W + +LE RH+N + +
Sbjct: 96 TGWVYLLQYVEQENHLMAAR----KAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEV 151
Query: 456 LRKAT-ALPAR----------RAEYFDGSEPVQNRV---------------YKSLKVWSM 489
R+ A+P E D +P N ++S ++W M
Sbjct: 152 YRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEM 211
Query: 490 LADLEESLGTFQSTKAVYDRILDL 513
+ E G + A+YDRIL +
Sbjct: 212 YINWENEQGNLREVTAIYDRILGI 235
Score = 32.7 bits (73), Expect = 1.5
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 395 HTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALR 454
H LW AF E G +++AR IL+ + V LA V + LE RH N +EA
Sbjct: 424 HMLWAAFE---EQQGNINEARNILKTFEEC----VLGLAMVRLRRVSLERRHGNLEEAEH 476
Query: 455 LLRKA 459
LL+ A
Sbjct: 477 LLQDA 481
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 36.6 bits (83), Expect = 0.10
Identities = 70/327 (21%), Positives = 133/327 (40%), Gaps = 36/327 (11%)
Query: 170 RRFLKLSPESAEEYIEY----LKSSDRLDEAAQRLATVVNDERFVSKA--------GKSN 217
R K + E A+ +Y ++ ++ L+EA ++LA + D +A K+
Sbjct: 1360 RALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDSEEQVEAVNAKCASLEKTK 1419
Query: 218 YQLWHELCDLISQNPDKVQSL---------NVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
+L E+ DL+ + ++ SL N D ++ T+ + +L SL +
Sbjct: 1420 QRLQGEVEDLMV-DVERANSLAAALDKKQRNFDKVLAEWKTKCEESQAELEASLKESRSL 1478
Query: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGRE----EEDD 324
S K ++ YEEA+ + TV+ + + IA +T EL + E +
Sbjct: 1479 STELFKLKNAYEEALDQLETVKRENKNLEQEIADLTEQIAENGKTIHELEKSRKQIELEK 1538
Query: 325 VDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQT 384
D++L L E + + + L + E +++A ++ Y V+T
Sbjct: 1539 ADIQLALEEAEAALEHEEAKILRIQL-ELTQVKSEIDRKIAEKDEEIEQLKRNYQRTVET 1597
Query: 385 V-DPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELE 443
+ A + + K E G L++ + L A + + + L SV Q + +
Sbjct: 1598 MQSALDAEVRSRNEAIRLKKKME--GDLNEIEIQLSHANRQAAETLKHLRSVQGQLKDTQ 1655
Query: 444 LRHENYDEALR---LLRKATALPARRA 467
L + D+ALR L++ A+ RRA
Sbjct: 1656 L---HLDDALRGQEDLKEQLAIVERRA 1679
>gi|190341068 forkhead-associated (FHA) phosphopeptide binding domain
1 [Homo sapiens]
Length = 1412
Score = 36.6 bits (83), Expect = 0.10
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 713 RHGNEDTI---KEMLRIRRSVQATYNTQVNFMASQMLKVSGS-ATGTVSDLAPGQSGMDD 768
RHG E+ I KE ++ + ++ + K+ G AT +D AP + D
Sbjct: 915 RHGFEEEIMEYKEQIKQHAQTIVSLEEKLQKVTQHHKKIEGEIATLKDNDPAPKEERPQD 974
Query: 769 ---MKLLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQL---- 821
+ E A+ +A E D L AQ +IL + +E + +L + + ++
Sbjct: 975 PLVAPMTESSAKDMAYEHLIDDLLAAQKEIL-----SQQEVIMKLRKDLTEAHSRMSDLR 1029
Query: 822 GEDEDEDEMDLEPNEVRLEQQSVPAAV 848
GE ++ +M+LE N V ++QQS +V
Sbjct: 1030 GELNEKQKMELEQNVVLVQQQSKELSV 1056
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 36.2 bits (82), Expect = 0.13
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 773 EQRAEQLAAEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEE-------------- 818
EQ EQ E ER Q L Q + ++ +EEL +L QQ+ ++
Sbjct: 332 EQELEQQRQELERQQELERQQEQRQLQLKL-QEELQQLEQQLEQQQQQLEQQEVQLELTP 390
Query: 819 IQLGEDEDEDEMDLEPNEVRLEQQSVPAA 847
++LG + E +++L P + L+ + VPAA
Sbjct: 391 VELGAQQQEVQLELTPVQPELQLELVPAA 419
Score = 32.7 bits (73), Expect = 1.5
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 763 QSGMDDMKLLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQL- 821
Q G +LL+Q+ QL + Q + Q ++L + + +++ + Q E++Q
Sbjct: 246 QQGQLQQQLLQQQQAQLQQQLLEQQQAQLQQQLLLQQQEQLQQQQQQQLLQQQQEQLQQQ 305
Query: 822 --------GEDEDEDEMDLEPNEVRLEQQ 842
E+E+E E++L P ++ EQ+
Sbjct: 306 QLQPPPLEPEEEEEVELELMPVDLGSEQE 334
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 35.8 bits (81), Expect = 0.17
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 16/143 (11%)
Query: 6 RLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEF--KQGAPKPRLNQLYERALKL 63
++ P R L+FE ++ N W+RY ++ +Q K + ++ RA++
Sbjct: 322 KIGDPARIQLIFERA-------LVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRN 374
Query: 64 LPCSYKLWYRYLKA-RRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQ---- 118
P + LW RYL A R V H+ ++ + +N +A ++ ++ + +LDY +
Sbjct: 375 CPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYV-EIWQAYLDYLRRRVD 433
Query: 119 FLMDQGR-VTHTRRTFDRALRAL 140
F D + + R F RAL L
Sbjct: 434 FKQDSSKELEELRAAFTRALEYL 456
Score = 31.2 bits (69), Expect = 4.3
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 87 VTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTH-TRRTFDRALRALPITQH 145
+ DPA + ERA V +P LW+ Y Q+L Q +V +RA+R P T
Sbjct: 323 IGDPAR--IQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWT-- 378
Query: 146 SRIWPLYLRFLRSHPLPETAVR-GYRRFLKLSPESAEEYIE 185
+W YL + H + + + + L A +Y+E
Sbjct: 379 VALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVE 419
>gi|45439327 periplakin [Homo sapiens]
Length = 1756
Score = 35.4 bits (80), Expect = 0.23
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 715 GNEDTIKEMLRIRRS-VQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLE 773
G E +KE+LRI QA Q+ + + G+ V LL+
Sbjct: 989 GQEYVVKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEVL-------------LLQ 1035
Query: 774 QRAEQLAAEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLE 833
QR LA E R Q + +++ +++D E + Q+ + + QL E ++E+ L+
Sbjct: 1036 QRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQ 1095
Query: 834 PNEVRLEQQSVPAAVFGSLKE 854
RLE++ A ++KE
Sbjct: 1096 DKLKRLEKERAMAEGKITVKE 1116
>gi|41152097 DNA segment on chromosome X and Y (unique) 155
expressed sequence isoform 1 [Homo sapiens]
Length = 695
Score = 35.0 bits (79), Expect = 0.30
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 728 RSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLE---QRAEQLAAEAE 784
R ++ Y + + +KVS +T +SD + + ++ KL E QR EQ E E
Sbjct: 235 RGMKLMYKGEDGKAVACNIKVSFDSTKHLSDASIKKRQLERQKLQELEQQREEQKRREKE 294
Query: 785 RDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLEQ 841
++ RA+ + ++EL EL ++ EE ++ + + +L N+ +LE+
Sbjct: 295 AEERQRAEER--------KQKELEELERERKREEKLRKREQKQRDRELRRNQKKLEK 343
>gi|94557295 mitogen-activated protein kinase 8 interacting protein
3 isoform 2 [Homo sapiens]
Length = 1330
Score = 35.0 bits (79), Expect = 0.30
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 25/135 (18%)
Query: 690 FCS-QICDPRTTGAFWQTWKDFE--VRHGNEDTIKEMLRIRRSVQATYNTQVNFMASQML 746
+CS + R +G +++FE + +E+ +KE++ + +V +
Sbjct: 19 YCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLD----------- 67
Query: 747 KVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPLRAQSKILFVR-SDASRE 805
S L+ Q +++LL + EQL + ER++ LR Q++ F+ DA +
Sbjct: 68 ----------SVLSENQEHEVELELLREDNEQLLTQYEREKALRRQAEEKFIEFEDALEQ 117
Query: 806 ELAELAQQVNPEEIQ 820
E EL QV E Q
Sbjct: 118 EKKELQIQVEHYEFQ 132
>gi|94557297 mitogen-activated protein kinase 8 interacting protein
3 isoform 1 [Homo sapiens]
Length = 1336
Score = 35.0 bits (79), Expect = 0.30
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 25/135 (18%)
Query: 690 FCS-QICDPRTTGAFWQTWKDFE--VRHGNEDTIKEMLRIRRSVQATYNTQVNFMASQML 746
+CS + R +G +++FE + +E+ +KE++ + +V +
Sbjct: 19 YCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLD----------- 67
Query: 747 KVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPLRAQSKILFVR-SDASRE 805
S L+ Q +++LL + EQL + ER++ LR Q++ F+ DA +
Sbjct: 68 ----------SVLSENQEHEVELELLREDNEQLLTQYEREKALRRQAEEKFIEFEDALEQ 117
Query: 806 ELAELAQQVNPEEIQ 820
E EL QV E Q
Sbjct: 118 EKKELQIQVEHYEFQ 132
>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
Length = 3639
Score = 35.0 bits (79), Expect = 0.30
Identities = 60/279 (21%), Positives = 108/279 (38%), Gaps = 41/279 (14%)
Query: 577 RDLFE------QALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYD 630
RDL E + P A+ L L AQL GL R + + +E A +
Sbjct: 1809 RDLLEVLTQVQEKATSLPNNVARDLCGLEAQLRSHQGLERELVGTERQLQELLETAGRVQ 1868
Query: 631 MFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSF 690
+ + + V + +A VL ME + +++RAR + F
Sbjct: 1869 K----LCPGPQAHAVQQRQQAVTQAWAVLQRR-----------MEQRRAQLERARLLARF 1913
Query: 691 CSQICDPRTTGAFWQTWKDFEVRHGNED--------TIKEMLRIRRSVQATYNTQVNFMA 742
+ + D + A + +D +V +++ + + LR + Q +
Sbjct: 1914 RTAVRDYASWAA--RVRQDLQVEESSQEPSSGPLKLSAHQWLRAELEAREKLWQQATQLG 1971
Query: 743 SQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPLRA-QSKILFVRSD 801
Q L +G+ T V + + L +QR + A + + L+A Q + LF+R
Sbjct: 1972 QQALLAAGTPTKEVQE--------ELRALQDQRDQVYQTWARKQERLQAEQQEQLFLREC 2023
Query: 802 ASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLE 840
EE+ AQ+V+ + LG +E E + +EV L+
Sbjct: 2024 GRLEEIL-AAQEVSLKTSALGSSVEEVEQLIRKHEVFLK 2061
>gi|115511012 coiled-coil domain containing 136 [Homo sapiens]
Length = 1154
Score = 34.7 bits (78), Expect = 0.39
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 711 EVRHGNEDTIKEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDM- 769
++R +KE R A N N +M KV+ + T + ++ +
Sbjct: 966 QLREKRPSVVKEA----RGKNANKNMNKNANGVKMKKVTKPCSDTSESDLETRKSLEVVL 1021
Query: 770 --KLLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREELAEL-AQQVNPEEIQLGEDED 826
K +++ + LA E E+ + + + K V+ +A + EL A+ +PEE + ED++
Sbjct: 1022 YYKASQRKLDGLAKEEEKKEEMEEEKKQ--VKEEAKEQCGDELVAEPADPEEAKSTEDQE 1079
Query: 827 EDEMDLEPNE 836
E+E D E E
Sbjct: 1080 ENEEDKEEEE 1089
>gi|4758648 kinesin family member 5B [Homo sapiens]
Length = 963
Score = 33.9 bits (76), Expect = 0.66
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 770 KLLEQRAEQLAAEAERDQP-LRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDED 828
++L+Q E+L A RDQ ++A+ L +DAS+EE+ E+ Q + EE+ + D+
Sbjct: 452 QMLDQ--EELLASTRRDQDNMQAELNRLQAENDASKEEVKEVLQAL--EELAVNYDQKSQ 507
Query: 829 EMDLEPNEVRL 839
E++ + E L
Sbjct: 508 EVEDKTKEYEL 518
>gi|198041734 kinesin light chain 2 isoform 1 [Homo sapiens]
Length = 622
Score = 33.5 bits (75), Expect = 0.86
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 765 GMDDMKLLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGED 824
G+ + +++ + L A Q LRAQ + L + REELA Q++ E + +
Sbjct: 71 GLGEAQVILALSSHLGAVESEKQKLRAQVRRLVQENQWLREELAGTQQKLQRSEQAVAQL 130
Query: 825 EDEDEMDLEPNEVR-LEQQSVPAAVFGSLKED 855
E+E + L +++R L++ + P G + +D
Sbjct: 131 EEEKQHLLFMSQIRKLDEDASPNEEKGDVPKD 162
>gi|198041731 kinesin light chain 2 isoform 1 [Homo sapiens]
Length = 622
Score = 33.5 bits (75), Expect = 0.86
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 765 GMDDMKLLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGED 824
G+ + +++ + L A Q LRAQ + L + REELA Q++ E + +
Sbjct: 71 GLGEAQVILALSSHLGAVESEKQKLRAQVRRLVQENQWLREELAGTQQKLQRSEQAVAQL 130
Query: 825 EDEDEMDLEPNEVR-LEQQSVPAAVFGSLKED 855
E+E + L +++R L++ + P G + +D
Sbjct: 131 EEEKQHLLFMSQIRKLDEDASPNEEKGDVPKD 162
>gi|12383062 kinesin light chain 2 isoform 1 [Homo sapiens]
Length = 622
Score = 33.5 bits (75), Expect = 0.86
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 765 GMDDMKLLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGED 824
G+ + +++ + L A Q LRAQ + L + REELA Q++ E + +
Sbjct: 71 GLGEAQVILALSSHLGAVESEKQKLRAQVRRLVQENQWLREELAGTQQKLQRSEQAVAQL 130
Query: 825 EDEDEMDLEPNEVR-LEQQSVPAAVFGSLKED 855
E+E + L +++R L++ + P G + +D
Sbjct: 131 EEEKQHLLFMSQIRKLDEDASPNEEKGDVPKD 162
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 33.1 bits (74), Expect = 1.1
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 771 LLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREE------LAELAQQVNPEEIQLGED 824
L QR +++A +R++ R Q + R + R E EL ++ E + +
Sbjct: 788 LRRQREQEIALRRQREEEERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKWARE 847
Query: 825 EDEDEMDLEPNEVRLEQQS 843
E+E + LE N +R+E+++
Sbjct: 848 EEEAQRRLEENRLRMEEEA 866
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 33.1 bits (74), Expect = 1.1
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 771 LLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREE------LAELAQQVNPEEIQLGED 824
L QR +++A +R++ R Q + R + R E EL ++ E + +
Sbjct: 815 LRRQREQEIALRRQREEEERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKWARE 874
Query: 825 EDEDEMDLEPNEVRLEQQS 843
E+E + LE N +R+E+++
Sbjct: 875 EEEAQRRLEENRLRMEEEA 893
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 33.1 bits (74), Expect = 1.1
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 771 LLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREE------LAELAQQVNPEEIQLGED 824
L QR +++A +R++ R Q + R + R E EL ++ E + +
Sbjct: 794 LRRQREQEIALRRQREEEERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKWARE 853
Query: 825 EDEDEMDLEPNEVRLEQQS 843
E+E + LE N +R+E+++
Sbjct: 854 EEEAQRRLEENRLRMEEEA 872
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 33.1 bits (74), Expect = 1.1
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 771 LLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREE------LAELAQQVNPEEIQLGED 824
L QR +++A +R++ R Q + R + R E EL ++ E + +
Sbjct: 794 LRRQREQEIALRRQREEEERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKWARE 853
Query: 825 EDEDEMDLEPNEVRLEQQS 843
E+E + LE N +R+E+++
Sbjct: 854 EEEAQRRLEENRLRMEEEA 872
>gi|75709187 cleavage stimulation factor subunit 3 isoform 2 [Homo
sapiens]
Length = 103
Score = 32.3 bits (72), Expect = 1.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 25 EEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKA 77
E+++ N + + W I Q P + + YER + P S + W Y++A
Sbjct: 22 EKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEA 74
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 32.0 bits (71), Expect = 2.5
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 784 ERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEV-RLEQQ 842
ER+ R + + + +E+ EL ++ E+ Q E+E+E+E ++E EV E +
Sbjct: 1008 ERESLTREEDEDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEEEEEVEEEEVEEAENE 1067
Query: 843 SVPAAVFGSLKED 855
A G +K+D
Sbjct: 1068 GEEAKTEGLMKDD 1080
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,631,185
Number of Sequences: 37866
Number of extensions: 1317179
Number of successful extensions: 5067
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 4811
Number of HSP's gapped (non-prelim): 241
length of query: 855
length of database: 18,247,518
effective HSP length: 111
effective length of query: 744
effective length of database: 14,044,392
effective search space: 10449027648
effective search space used: 10449027648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.