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Search of human proteins with 55741630
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55741630 hypothetical protein LOC198437 [Homo sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55741630 hypothetical protein LOC198437 [Homo sapiens] 489 e-139
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 37 0.012
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] 37 0.012
gi|48475062 growth differentiation factor 6 precursor [Homo sapi... 36 0.026
gi|18104952 T-box 1 isoform C [Homo sapiens] 36 0.026
gi|30795231 brain abundant, membrane attached signal protein 1 [... 34 0.099
gi|117938768 GNAS complex locus alex [Homo sapiens] 34 0.099
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 34 0.099
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 34 0.099
gi|239748157 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|239742055 PREDICTED: hypothetical protein XP_002342401 [Homo ... 34 0.13
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 34 0.13
gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H... 33 0.17
gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H... 33 0.17
gi|11056048 doublesex and mab-3 related transcription factor 3 [... 33 0.17
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 33 0.17
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 33 0.17
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 33 0.22
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 33 0.22
gi|239753508 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo sap... 33 0.22
gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens] 33 0.22
gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 33 0.22
gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 33 0.22
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] 33 0.22
gi|149274614 melanoma antigen family D, 4 [Homo sapiens] 33 0.22
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 33 0.29
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 33 0.29
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 33 0.29
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 32 0.38
>gi|55741630 hypothetical protein LOC198437 [Homo sapiens]
Length = 240
Score = 489 bits (1259), Expect = e-139
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MPPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRH 60
MPPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRH
Sbjct: 1 MPPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRH 60
Query: 61 RHLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPRPWTQSLELPAERQNRLLGVLKAAEAR 120
RHLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPRPWTQSLELPAERQNRLLGVLKAAEAR
Sbjct: 61 RHLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPRPWTQSLELPAERQNRLLGVLKAAEAR 120
Query: 121 GRVRALRLRYTRMRAEEIALLIQRQKSARAAIRLELFLPPQLKPARIPDPLDRQEVQTSP 180
GRVRALRLRYTRMRAEEIALLIQRQKSARAAIRLELFLPPQLKPARIPDPLDRQEVQTSP
Sbjct: 121 GRVRALRLRYTRMRAEEIALLIQRQKSARAAIRLELFLPPQLKPARIPDPLDRQEVQTSP 180
Query: 181 GRGGERGGALPASAHAGPQPLSPAAEARGDHPGGERGWHHLPAVTATESVRRAPASHIKL 240
GRGGERGGALPASAHAGPQPLSPAAEARGDHPGGERGWHHLPAVTATESVRRAPASHIKL
Sbjct: 181 GRGGERGGALPASAHAGPQPLSPAAEARGDHPGGERGWHHLPAVTATESVRRAPASHIKL 240
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 37.4 bits (85), Expect = 0.012
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 22/203 (10%)
Query: 10 RKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRHRHLLF---- 65
+K P++ APGT +G R KG+ T P A T +G+ ++ L
Sbjct: 182 QKPPKKPKSPKAPGTGRGRGRPKGSGTTRPK----AATSEGVQVKRVLEKSPGKLLVKMP 237
Query: 66 -----GDLLEDVGAAASTFPCGSVEPGYRM---PDPRPWTQSLELPAERQNRLLGVLKAA 117
G E GA ST PG + DP+ +P +R + V+ AA
Sbjct: 238 FQTSPGGKAEGGGATTSTQVMVIKRPGRKRKAEADPQ------AIPKKRGRKPGSVVAAA 291
Query: 118 EARGRVRALRLRYTRMRAEEIALLIQRQKSARAAIRLELFLPPQLKPARIPDPLDRQEVQ 177
A + +A++ R E + + +R+ +I ++ + P L +
Sbjct: 292 AAEAKKKAVKESSIRSVQETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTC 351
Query: 178 TSPGRGGERGGALPASAHAGPQP 200
SPGR + S+ A P
Sbjct: 352 KSPGRKSKESSPKGRSSSASSPP 374
>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
Length = 486
Score = 37.4 bits (85), Expect = 0.012
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 22/203 (10%)
Query: 10 RKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRHRHLLF---- 65
+K P++ APGT +G R KG+ T P A T +G+ ++ L
Sbjct: 170 QKPPKKPKSPKAPGTGRGRGRPKGSGTTRPK----AATSEGVQVKRVLEKSPGKLLVKMP 225
Query: 66 -----GDLLEDVGAAASTFPCGSVEPGYRM---PDPRPWTQSLELPAERQNRLLGVLKAA 117
G E GA ST PG + DP+ +P +R + V+ AA
Sbjct: 226 FQTSPGGKAEGGGATTSTQVMVIKRPGRKRKAEADPQ------AIPKKRGRKPGSVVAAA 279
Query: 118 EARGRVRALRLRYTRMRAEEIALLIQRQKSARAAIRLELFLPPQLKPARIPDPLDRQEVQ 177
A + +A++ R E + + +R+ +I ++ + P L +
Sbjct: 280 AAEAKKKAVKESSIRSVQETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTC 339
Query: 178 TSPGRGGERGGALPASAHAGPQP 200
SPGR + S+ A P
Sbjct: 340 KSPGRKSKESSPKGRSSSASSPP 362
>gi|48475062 growth differentiation factor 6 precursor [Homo
sapiens]
Length = 455
Score = 36.2 bits (82), Expect = 0.026
Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 16/114 (14%)
Query: 27 GEERAKGAPATEPPKPGWALTPQGLAAMLPAQR---------HRHLLFGDLLEDVGAAAS 77
GE A+ +PP P G P +R R LF ++ E +G+A +
Sbjct: 243 GEAEARARGPQQPPPPDLRSLGFGRRVRPPQERALLVVFTRSQRKNLFAEMREQLGSAEA 302
Query: 78 TFPC----GSVEPGYRMPDPRPWTQSLELPAERQNRLLGVLKAAEARGRVRALR 127
P GS P PD RPW S P R+ R + + G+ LR
Sbjct: 303 AGPGAGAEGSWPPPSGAPDARPWLPS---PGRRRRRTAFASRHGKRHGKKSRLR 353
>gi|18104952 T-box 1 isoform C [Homo sapiens]
Length = 495
Score = 36.2 bits (82), Expect = 0.026
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 164 PARIPDPLDRQEVQTSPGRGGERGGALPASAHAGPQPLSPAAEARGDHPGGERGWHHLP 222
PA P L R + PG GG GG +P G +P P E R + PG HH P
Sbjct: 358 PAHPPQLLARVLSPSLPGAGGA-GGLVPLPGAPGGRPSPPNPELRLEAPGASEPLHHHP 415
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 34.3 bits (77), Expect = 0.099
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 165 ARIPDPLDRQEVQTSPGRGGERGGALPASAHAGPQPLSPAAEARGDHPGGERG---WHHL 221
A+ P ++ Q +PG GG P +A A P AA A G+ P E G
Sbjct: 96 AKAEPPKAPEQEQAAPGPAA--GGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEA 153
Query: 222 PAVTATESVRR--APASHIK 239
PA A + + APAS K
Sbjct: 154 PAAPAAQETKSDGAPASDSK 173
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 34.3 bits (77), Expect = 0.099
Identities = 55/187 (29%), Positives = 73/187 (39%), Gaps = 35/187 (18%)
Query: 11 KGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRHRHLLFGDLLE 70
+G E S KS + + R + A+ PP+ P G A P+ H L DLL
Sbjct: 178 RGFPELSHKSTAAASSRQSRPRVRSASLPPR---TRLPSGSQA--PSAAHPKRL-SDLLL 231
Query: 71 DVGAAASTFPCGSVEPGYRMPDPRPWTQSLELPAERQNRLLGVLKAAEARGRVRALR--- 127
AAA PG+R PDPR L P L A ++R R R
Sbjct: 232 TSRAAA---------PGWRSPDPR---SRLAAPPLGSTTLPSTWTAPQSRLTARPSRSPE 279
Query: 128 --LRYTRMRAEEIALLIQRQKSARAAIRLELF-------LPPQLKPARIP---DPLDRQE 175
+R + R ++ QR K R E + LPP +P RIP PL Q
Sbjct: 280 PQIRESEQRDPQLRRKQQRWKEPLMPRREEKYPLRGTDPLPPG-QPQRIPLPGQPLQPQP 338
Query: 176 VQTSPGR 182
+ T PG+
Sbjct: 339 ILT-PGQ 344
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 34.3 bits (77), Expect = 0.099
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 2 PPPAKEGGR--KGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQG 50
PPP K G +G + RS +S PG QG G P PP+ G PQG
Sbjct: 72 PPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGG--NKPQG 120
Score = 31.6 bits (70), Expect = 0.64
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 2 PPPAKEGG---RKGPRERSGKSAPGTAQGEERAKGAPATEPPKP 42
PPP K G + G + +S +S PG QG + +G PP P
Sbjct: 122 PPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPP 165
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 34.3 bits (77), Expect = 0.099
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 2 PPPAKEGG---RKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQG 50
P P K G ++G + RS +S PG QG + +G PP PG PQG
Sbjct: 157 PHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPG---KPQG 205
>gi|239748157 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 33.9 bits (76), Expect = 0.13
Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 4 PAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRHRHL 63
P GGR G RE G PG G RA+ A A P AL G + L A H L
Sbjct: 13 PGPRGGRAGRREAGG---PGHNGGGGRARWAAAARTP----ALGGGGGSVELAADFHAIL 65
Query: 64 LFGDLLEDVGAAAST------FPCGSVEPGYRMPDPRPWTQSLELPAERQNR 109
+ L D G A+ +P + P PW E +++ R
Sbjct: 66 CPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKER 117
>gi|239742055 PREDICTED: hypothetical protein XP_002342401 [Homo
sapiens]
Length = 128
Score = 33.9 bits (76), Expect = 0.13
Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 4 PAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRHRHL 63
P GGR G RE G PG G RA+ A A P AL G + L A H L
Sbjct: 13 PGPRGGRAGRREAGG---PGHNGGGGRARWAAAARTP----ALGGGGGSVELAADFHAIL 65
Query: 64 LFGDLLEDVGAAAST------FPCGSVEPGYRMPDPRPWTQSLELPAERQNR 109
+ L D G A+ +P + P PW E +++ R
Sbjct: 66 CPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKER 117
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 33.9 bits (76), Expect = 0.13
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 158 LPPQLKPARIPDPLDRQEVQTSPGRGGERGGALPASAHAGPQPLSPAAEARGDHPG 213
LPP + PA P P+ P G G P H+ P P P HPG
Sbjct: 253 LPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGM---PHPG 305
>gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform b [Homo sapiens]
Length = 2347
Score = 33.5 bits (75), Expect = 0.17
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 136 EEIALLIQRQKSARAAIRLELFLPPQLKPARIPDPLDRQEVQTSPGRGGERGGALPASAH 195
+E A + +A A++RL L P +P + + TSPG G+ G P +
Sbjct: 586 QERARVAHAAATAAASLRLATGLGTMNYPTILPSGVGSGKGSTSPGPKGKWAGGPPGTGG 645
Query: 196 AGPQPL-SPAAEARGDHPGGERGWHHLP 222
GP L SP + H GE G P
Sbjct: 646 HGPLSLNSPDPYEKIPHVVGEHGLGQAP 673
>gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform a [Homo sapiens]
Length = 2353
Score = 33.5 bits (75), Expect = 0.17
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 136 EEIALLIQRQKSARAAIRLELFLPPQLKPARIPDPLDRQEVQTSPGRGGERGGALPASAH 195
+E A + +A A++RL L P +P + + TSPG G+ G P +
Sbjct: 586 QERARVAHAAATAAASLRLATGLGTMNYPTILPSGVGSGKGSTSPGPKGKWAGGPPGTGG 645
Query: 196 AGPQPL-SPAAEARGDHPGGERGWHHLP 222
GP L SP + H GE G P
Sbjct: 646 HGPLSLNSPDPYEKIPHVVGEHGLGQAP 673
>gi|11056048 doublesex and mab-3 related transcription factor 3
[Homo sapiens]
Length = 472
Score = 33.5 bits (75), Expect = 0.17
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 129 RYTRMR---AEEIALLIQRQKSARAAIRLELFLPPQLKPARIPDPLDRQEVQTSPGRGGE 185
RY R + E+ L+I+RQ+ A + L + + IPD L PG
Sbjct: 46 RYCRFKDCTCEKCILIIERQRVMAAQVALRRQQANESLESLIPDSLRALPGPPPPGDAVA 105
Query: 186 RGGALPASAHAGPQPLSPAAE 206
PAS + PQP PAAE
Sbjct: 106 APQPPPASQPSQPQPPRPAAE 126
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 33.5 bits (75), Expect = 0.17
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 2 PPPAKEGG---RKGPRERSGKSAPGTAQGEERAKG-APATEPPKPGWALTPQG 50
PPP K G + G + RS +S PG QG G P PP PG PQG
Sbjct: 278 PPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPG---KPQG 327
Score = 33.1 bits (74), Expect = 0.22
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 2 PPPAKEGGR--KGPRERSGKSAPGTAQGEERAKG-APATEPPKPGWALTPQG 50
PPP K G +G + RS +S PG QG G P PP PG PQG
Sbjct: 93 PPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG---KPQG 141
Score = 33.1 bits (74), Expect = 0.22
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 2 PPPAKEGG---RKGPRERSGKSAPGTAQGEERAKGAPATEPPKP 42
PPP K G + G + RS +S PG QG + +G PP P
Sbjct: 340 PPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPP 383
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 2 PPPAKEGG---RKGPRERSGKSAPGTAQGEERAKG-APATEPPKPGWALTPQG 50
PPP K G + + RS +S PG QG G P PP PG PQG
Sbjct: 154 PPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPG---KPQG 203
Score = 28.9 bits (63), Expect = 4.2
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 2 PPPAKEGG---RKGPRERSGKSAPGTAQGEERAKG-APATEPPKPGWALTPQG 50
PPP K G + + +S +S PG QG G P PP PG PQG
Sbjct: 216 PPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPG---KPQG 265
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 33.5 bits (75), Expect = 0.17
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 2 PPPAKEGGR--KGPRERSGKSAPGTAQGEERAKG-APATEPPKPGWALTPQG 50
PPP K G +G + RS +S PG QG G P PP PG PQG
Sbjct: 194 PPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPG---KPQG 242
Score = 33.1 bits (74), Expect = 0.22
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 2 PPPAKEGGR--KGPRERSGKSAPGTAQGEERAKG-APATEPPKPGWALTPQG 50
PPP K G +G + RS +S PG QG G P PP PG PQG
Sbjct: 72 PPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG---KPQG 120
Score = 33.1 bits (74), Expect = 0.22
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 2 PPPAKEGGR--KGPRERSGKSAPGTAQGEERAKG-APATEPPKPGWALTPQG 50
PPP K G +G + RS +S PG QG G P PP PG PQG
Sbjct: 133 PPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG---KPQG 181
Score = 31.6 bits (70), Expect = 0.64
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 2 PPPAKEGG---RKGPRERSGKSAPGTAQGEERAKGAPATEPPKP 42
PPP K G + G + +S +S PG QG + +G PP P
Sbjct: 255 PPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPP 298
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 33.1 bits (74), Expect = 0.22
Identities = 29/75 (38%), Positives = 35/75 (46%), Gaps = 22/75 (29%)
Query: 2 PPPAKEGGRKGPRERSGKSA----------PGTAQGEERAKGA--PATEPPKPGWALTPQ 49
P PA + G KGPR +G + PG A GE+ + GA PA P PG PQ
Sbjct: 898 PGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPA-GEKGSPGADGPAGAPGTPG----PQ 952
Query: 50 GLAAM-----LPAQR 59
G+A LP QR
Sbjct: 953 GIAGQRGVVGLPGQR 967
Score = 30.8 bits (68), Expect = 1.1
Identities = 33/104 (31%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 2 PPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRHR 61
P PA + GR GP G G KGA A EP K G P A+ PA +
Sbjct: 556 PGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGA-AGEPGKAGERGVPGPPGAVGPAGKD- 613
Query: 62 HLLFGDLLEDVGAAASTFPCGSV-EPGYRMPDPRPWTQSLELPA 104
+ GA P G E G + P P Q L PA
Sbjct: 614 --------GEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 649
Score = 30.0 bits (66), Expect = 1.9
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 180 PGRGGERGGALP------------ASAHAGPQPLSPAAEARGDHPGGERGWHHLP 222
PG+ GERG P A A P P PA E P G G+ LP
Sbjct: 592 PGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP 646
Score = 28.9 bits (63), Expect = 4.2
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 2 PPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQG 50
P PA G KG SG + P A+G +G P PP P P G
Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPG--PPGPAGFAGPPG 818
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 33.1 bits (74), Expect = 0.22
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 2 PPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQR 59
P P G+ G R SG + P A G ++GAP + P+ T + AA + R
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHR 1109
Score = 27.7 bits (60), Expect = 9.2
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 3 PPAKEG--GRKGPRERSGKSAPGTAQGEERAKGAPATEPPK 41
PP G G GP GK P G A G+P PK
Sbjct: 883 PPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPK 923
>gi|239753508 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 33.1 bits (74), Expect = 0.22
Identities = 33/110 (30%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 4 PAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRHRHL 63
P GGR G RE G PG G RA+ A A P AL G + L A H L
Sbjct: 13 PGPRGGRAGRREAGG---PGHNGGGGRARWAAAARTP----ALGGGGGSVELAADFHAIL 65
Query: 64 LFGDLLEDVGAAAST------FPCGSVEPGYRMPDPRPWTQSLELPAERQ 107
+ L D G A+ +P + P PW E +R+
Sbjct: 66 CPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKRK 115
>gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo
sapiens]
Length = 328
Score = 33.1 bits (74), Expect = 0.22
Identities = 39/139 (28%), Positives = 49/139 (35%), Gaps = 18/139 (12%)
Query: 2 PPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRHR 61
P P +EGGR G S + P R + PA PP P + P PA R
Sbjct: 140 PQPGREGGRAG--AESETAPPPRTNKHRRLQPEPAPRPPPPAASFQPGSALQPPPAPPRR 197
Query: 62 HLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPRPWTQSLELPAERQNRLLGVL-KAAEAR 120
+ S P + RP + SL P + R G +A E R
Sbjct: 198 D-------DSASLRCSVLPPARRAVAAALGKWRPSSFSLP-PFNLKRRENGASERAGERR 249
Query: 121 G-------RVRALRLRYTR 132
G R+R LRLR R
Sbjct: 250 GQGEEGQQRLRRLRLRRPR 268
>gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]
Length = 739
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/99 (35%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 2 PPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALT------PQGLAAML 55
P PA+E +GP SG P T G E A P T K G AL PQ + A
Sbjct: 255 PAPAQEAATEGPSAASG--VPQTGPGREVAATRPKT--TKSGKALAKTRWVEPQNVVAAA 310
Query: 56 PAQRHRHLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPR 94
A+ + + E GAAA+T S EP RM R
Sbjct: 311 AAKAK---MATSIPEPEGAAAATAQ-HSAEPWARMGGKR 345
>gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/99 (35%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 2 PPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALT------PQGLAAML 55
P PA+E +GP SG P T G E A P T K G AL PQ + A
Sbjct: 255 PAPAQEAATEGPSAASG--VPQTGPGREVAATRPKT--TKSGKALAKTRWVEPQNVVAAA 310
Query: 56 PAQRHRHLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPR 94
A+ + + E GAAA+T S EP RM R
Sbjct: 311 AAKAK---MATSIPEPEGAAAATAQ-HSAEPWARMGGKR 345
>gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/99 (35%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 2 PPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALT------PQGLAAML 55
P PA+E +GP SG P T G E A P T K G AL PQ + A
Sbjct: 255 PAPAQEAATEGPSAASG--VPQTGPGREVAATRPKT--TKSGKALAKTRWVEPQNVVAAA 310
Query: 56 PAQRHRHLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPR 94
A+ + + E GAAA+T S EP RM R
Sbjct: 311 AAKAK---MATSIPEPEGAAAATAQ-HSAEPWARMGGKR 345
>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
Length = 1185
Score = 33.1 bits (74), Expect = 0.22
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 19/68 (27%)
Query: 166 RIPDPLDRQEVQTS-------------------PGRGGERGGALPASAHAGPQPLSPAAE 206
RIP+P+ R+ V S PG G G A + A GPQP AA
Sbjct: 88 RIPEPVQRRIVYWSFPRNEREICMYSSFQYRGGPGAGAAGGAAGASPAEEGPQPPPGAAA 147
Query: 207 ARGDHPGG 214
G PGG
Sbjct: 148 PAGSAPGG 155
>gi|149274614 melanoma antigen family D, 4 [Homo sapiens]
Length = 739
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/99 (35%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 2 PPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALT------PQGLAAML 55
P PA+E +GP SG P T G E A P T K G AL PQ + A
Sbjct: 255 PAPAQEAATEGPSAASG--VPQTGPGREVAATRPKT--TKSGKALAKTRWVEPQNVVAAA 310
Query: 56 PAQRHRHLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPR 94
A+ + + E GAAA+T S EP RM R
Sbjct: 311 AAKAK---MATSIPEPEGAAAATAQ-HSAEPWARMGGKR 345
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 32.7 bits (73), Expect = 0.29
Identities = 62/228 (27%), Positives = 79/228 (34%), Gaps = 32/228 (14%)
Query: 3 PPAKEGGRKGPR----ERSGKSAPGTAQG----EERAKGAPATEPPKPGWALTPQGLAA- 53
PP + G PR K+ G +QG E A + AT P P A PQG +
Sbjct: 65 PPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISP 124
Query: 54 -MLPAQRHRHLLFGD------LLEDVGAAASTFPCGSVEPGYRMPDPRPWTQSLE-LPAE 105
LPA R + FG + + P V + P PRP P
Sbjct: 125 PQLPAPRPKR--FGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGA 182
Query: 106 RQNRLLGVLKAAEARGRVRALRLRYTRMRA---------EEIALLIQRQKSARAAIRLEL 156
R +LL AA R A RL RA A +S RA +
Sbjct: 183 RAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTE 242
Query: 157 FLPP-QLKPARIPDPLDRQEVQTSPGRGGERGGALPASAHAGPQPLSP 203
FL P + +P + P+ R + G G PA A P LSP
Sbjct: 243 FLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALA---PPKLSP 287
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 32.7 bits (73), Expect = 0.29
Identities = 62/228 (27%), Positives = 79/228 (34%), Gaps = 32/228 (14%)
Query: 3 PPAKEGGRKGPR----ERSGKSAPGTAQG----EERAKGAPATEPPKPGWALTPQGLAA- 53
PP + G PR K+ G +QG E A + AT P P A PQG +
Sbjct: 65 PPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISP 124
Query: 54 -MLPAQRHRHLLFGD------LLEDVGAAASTFPCGSVEPGYRMPDPRPWTQSLE-LPAE 105
LPA R + FG + + P V + P PRP P
Sbjct: 125 PQLPAPRPKR--FGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGA 182
Query: 106 RQNRLLGVLKAAEARGRVRALRLRYTRMRA---------EEIALLIQRQKSARAAIRLEL 156
R +LL AA R A RL RA A +S RA +
Sbjct: 183 RAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTE 242
Query: 157 FLPP-QLKPARIPDPLDRQEVQTSPGRGGERGGALPASAHAGPQPLSP 203
FL P + +P + P+ R + G G PA A P LSP
Sbjct: 243 FLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALA---PPKLSP 287
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 32.7 bits (73), Expect = 0.29
Identities = 62/228 (27%), Positives = 79/228 (34%), Gaps = 32/228 (14%)
Query: 3 PPAKEGGRKGPR----ERSGKSAPGTAQG----EERAKGAPATEPPKPGWALTPQGLAA- 53
PP + G PR K+ G +QG E A + AT P P A PQG +
Sbjct: 65 PPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISP 124
Query: 54 -MLPAQRHRHLLFGD------LLEDVGAAASTFPCGSVEPGYRMPDPRPWTQSLE-LPAE 105
LPA R + FG + + P V + P PRP P
Sbjct: 125 PQLPAPRPKR--FGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGA 182
Query: 106 RQNRLLGVLKAAEARGRVRALRLRYTRMRA---------EEIALLIQRQKSARAAIRLEL 156
R +LL AA R A RL RA A +S RA +
Sbjct: 183 RAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTE 242
Query: 157 FLPP-QLKPARIPDPLDRQEVQTSPGRGGERGGALPASAHAGPQPLSP 203
FL P + +P + P+ R + G G PA A P LSP
Sbjct: 243 FLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALA---PPKLSP 287
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 32.3 bits (72), Expect = 0.38
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 158 LPPQLKPARIPDPLDRQEVQTSPGRGGERGGALPASAHAGPQP 200
L P KPAR P P R + + G G G PA+ + QP
Sbjct: 215 LLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQP 257
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,426,256
Number of Sequences: 37866
Number of extensions: 753137
Number of successful extensions: 4974
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 4097
Number of HSP's gapped (non-prelim): 1137
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.