Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD46 Sequence: fasta or formatted (384aa) NCBI GI: 24432108
Description:

CD46 antigen, complement regulatory protein isoform 4 precursor

Referenced in:

Complement
Viral Receptors

Other entries for this name:
alt prot [392aa] CD46 antigen, complement regulatory protein isoform 1 precursor
alt prot [349aa] CD46 antigen, complement regulatory protein isoform 14 precursor
alt prot [377aa] CD46 antigen, complement regulatory protein isoform 3 precursor
alt prot [362aa] CD46 antigen, complement regulatory protein isoform 5 precursor
alt prot [369aa] CD46 antigen, complement regulatory protein isoform 6 precursor
alt prot [378aa] CD46 antigen, complement regulatory protein isoform 7 precursor
alt prot [363aa] CD46 antigen, complement regulatory protein isoform 9 precursor
alt prot [370aa] CD46 antigen, complement regulatory protein isoform 10 precursor
alt prot [348aa] CD46 antigen, complement regulatory protein isoform 11 precursor
alt prot [373aa] CD46 antigen, complement regulatory protein isoform 13 precursor
alt prot [399aa] CD46 antigen, complement regulatory protein isoform 2 precursor
alt prot [385aa] CD46 antigen, complement regulatory protein isoform 8 precursor
alt prot [355aa] CD46 antigen, complement regulatory protein isoform 12 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         23           2
 C cysteine            4.7         18           1
 D aspartate           4.7         18           2
 E glutamate           6.8         26           2
 F phenylalanine       3.9         15           1
 G glycine             7.6         29           2
 H histidine           1.0          4           1
 I isoleucine          5.5         21           1
 K lysine              7.3         28           3
 L leucine             5.5         21           3
 M methionine          1.3          5           1
 N asparagine          2.3          9           1
 P proline            10.2         39           3
 Q glutamine           1.6          6           1
 R arginine            3.6         14           2
 S serine              6.8         26           2
 T threonine           5.5         21           2
 V valine              7.6         29           2
 W tryptophan          1.6          6           1
 Y tyrosine            6.8         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD46 antigen, complement regulatory protein isoform ... 
CD46                  0.987   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.955   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.947   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.942   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.942   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.930   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.908   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.897   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.889   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.887   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.883   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.849   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.843   CD46 antigen, complement regulatory protein isoform ...
CR1L                  0.209   complement component (3b/4b) receptor 1-like 
C4BPA                 0.181   complement component 4 binding protein, alpha chain p...
CR1                   0.162   complement receptor 1 isoform S precursor 
CR1                   0.162   complement receptor 1 isoform F precursor 
CR2                   0.143   complement component (3d/Epstein Barr virus) recepto...
CR2                   0.141   complement component (3d/Epstein Barr virus) recepto...
SVEP1                 0.122   polydom 
APOH                  0.106   apolipoprotein H precursor 
CSMD3                 0.103   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.103   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.103   CUB and Sushi multiple domains 3 isoform 1 
CD55                  0.103   decay accelerating factor for complement isoform 2 ...
CD55                  0.103   decay accelerating factor for complement isoform 1 p...
CSMD1                 0.099   CUB and Sushi multiple domains 1 
CFH                   0.095   complement factor H isoform b precursor 
CFH                   0.095   complement factor H isoform a precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press