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Search of human proteins with 5454084
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5454084 serine palmitoyltransferase subunit 1 isoform a
[Homo sapiens]
(473 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5454084 serine palmitoyltransferase subunit 1 isoform a [Homo... 936 0.0
gi|30474871 serine palmitoyltransferase subunit 1 isoform b [Hom... 293 2e-79
gi|4758668 serine palmitoyltransferase, long chain base subunit ... 165 7e-41
gi|119220554 serine palmitoyltransferase, long chain base subuni... 164 1e-40
gi|7657118 glycine C-acetyltransferase precursor [Homo sapiens] 136 4e-32
gi|40316939 5-aminolevulinate synthase 1 [Homo sapiens] 127 3e-29
gi|4502025 5-aminolevulinate synthase 1 [Homo sapiens] 127 3e-29
gi|83977444 5-aminolevulinate synthase 2 isoform c precursor [Ho... 123 4e-28
gi|83977440 5-aminolevulinate synthase 2 isoform b precursor [Ho... 123 4e-28
gi|83977442 5-aminolevulinate synthase 2 isoform a precursor [Ho... 123 4e-28
gi|71725360 zinc finger protein 609 [Homo sapiens] 33 0.43
gi|24308113 KIF1 binding protein [Homo sapiens] 33 0.73
gi|4507689 transient receptor potential cation channel, subfamil... 32 1.6
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 31 2.8
gi|188528675 slit homolog 1 [Homo sapiens] 30 3.6
gi|238859593 UDP-glucose ceramide glucosyltransferase-like 2 [Ho... 30 6.2
gi|47106052 coiled-coil domain containing 103 [Homo sapiens] 30 6.2
>gi|5454084 serine palmitoyltransferase subunit 1 isoform a [Homo
sapiens]
Length = 473
Score = 936 bits (2420), Expect = 0.0
Identities = 473/473 (100%), Positives = 473/473 (100%)
Query: 1 MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL 60
MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL
Sbjct: 1 MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL 60
Query: 61 IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA 120
IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA
Sbjct: 61 IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA 120
Query: 121 ALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSK 180
ALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSK
Sbjct: 121 ALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSK 180
Query: 181 RGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRR 240
RGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRR
Sbjct: 181 RGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRR 240
Query: 241 FIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGINIDDI 300
FIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGINIDDI
Sbjct: 241 FIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGINIDDI 300
Query: 301 DLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENP 360
DLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENP
Sbjct: 301 DLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENP 360
Query: 361 GIFAVLKEKCGQIHKALQGISGLKVVGESLSPAFHLQLEESTGSREQDVRLLQEIVDQCM 420
GIFAVLKEKCGQIHKALQGISGLKVVGESLSPAFHLQLEESTGSREQDVRLLQEIVDQCM
Sbjct: 361 GIFAVLKEKCGQIHKALQGISGLKVVGESLSPAFHLQLEESTGSREQDVRLLQEIVDQCM 420
Query: 421 NRSIALTQARYLEKEEKCLPPPSIRVVVTVEQTEEELERAASTIKEVAQAVLL 473
NRSIALTQARYLEKEEKCLPPPSIRVVVTVEQTEEELERAASTIKEVAQAVLL
Sbjct: 421 NRSIALTQARYLEKEEKCLPPPSIRVVVTVEQTEEELERAASTIKEVAQAVLL 473
>gi|30474871 serine palmitoyltransferase subunit 1 isoform b [Homo
sapiens]
Length = 143
Score = 293 bits (751), Expect = 2e-79
Identities = 142/143 (99%), Positives = 143/143 (100%)
Query: 1 MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL 60
MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL
Sbjct: 1 MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL 60
Query: 61 IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA 120
IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA
Sbjct: 61 IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA 120
Query: 121 ALASLKKYGVGTCGPRGFYGTFD 143
ALASLKKYGVGTCGPRGFYGTF+
Sbjct: 121 ALASLKKYGVGTCGPRGFYGTFE 143
>gi|4758668 serine palmitoyltransferase, long chain base subunit 2
[Homo sapiens]
Length = 562
Score = 165 bits (418), Expect = 7e-41
Identities = 92/266 (34%), Positives = 149/266 (56%), Gaps = 4/266 (1%)
Query: 98 KECINFASFNFLGLLDNP-RVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFM 156
K IN S+N+LG N + AA L++YG G C R G D H +LE+ +A+F+
Sbjct: 168 KGVINMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLDKHEELEELVARFL 227
Query: 157 KTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMAD 216
E A+ Y GFAT + IPA +G ++ D ++ G + S + I++FKHN+M
Sbjct: 228 GVEAAMAYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQS 287
Query: 217 LERLLKEQEIEDQKNPRKARVTRRFIV-VEGLYMNTGTICPLPELVKLKYKYKARIFLEE 275
LE+LLK+ + Q PR R ++ ++ VEG+Y G+I LPE++ LK KYKA ++L+E
Sbjct: 288 LEKLLKDAIVYGQ--PRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDE 345
Query: 276 SLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQGY 335
+ S G LG GRGV E++G++ +D+D++ + + GG+ G+ +ID+ R
Sbjct: 346 AHSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSA 405
Query: 336 CFSASLPPLLAAAAIEALNIMEENPG 361
++ SL P + I ++ + G
Sbjct: 406 VYATSLSPPVVEQIITSMKCIMGQDG 431
>gi|119220554 serine palmitoyltransferase, long chain base subunit 3
[Homo sapiens]
Length = 552
Score = 164 bits (416), Expect = 1e-40
Identities = 88/260 (33%), Positives = 148/260 (56%), Gaps = 2/260 (0%)
Query: 98 KECINFASFNFLGLLDNPRVKAAALAS-LKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFM 156
K+ IN S+NFLGL + L+ YG G R GT D H +LED +AKF+
Sbjct: 160 KDVINMGSYNFLGLAAKYDESMRTIKDVLEVYGTGVASTRHEMGTLDKHKELEDLVAKFL 219
Query: 157 KTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMAD 216
E A+++ GFAT + IPA +G ++ D ++ G + S + I++FKHN+
Sbjct: 220 NVEAAMVFGMGFATNSMNIPALVGKGCLILSDELNHTSLVLGARLSGATIRIFKHNNTQS 279
Query: 217 LERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEES 276
LE+LL++ I Q R+A + I+VEG+Y G+I LP+++ LK KYKA ++++E+
Sbjct: 280 LEKLLRDAVIYGQPRTRRAW-KKILILVEGVYSMEGSIVHLPQIIALKKKYKAYLYIDEA 338
Query: 277 LSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQGYC 336
S G +G GRGVTE +G++ ++D++ + + GG+ GR ++D+ R+
Sbjct: 339 HSIGAVGPTGRGVTEFFGLDPHEVDVLMGTFTKSFGASGGYIAGRKDLVDYLRVHSHSAV 398
Query: 337 FSASLPPLLAAAAIEALNIM 356
+++S+ P +A I +L ++
Sbjct: 399 YASSMSPPIAEQIIRSLKLI 418
>gi|7657118 glycine C-acetyltransferase precursor [Homo sapiens]
Length = 419
Score = 136 bits (343), Expect = 4e-32
Identities = 104/370 (28%), Positives = 175/370 (47%), Gaps = 25/370 (6%)
Query: 101 INFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEE 160
+NF + N+LGL +P V A L +L+++G G R GT +H +LE ++A+F + E+
Sbjct: 68 LNFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQRED 127
Query: 161 AIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERL 220
AI+Y + A A D V D +I G++ ++ ++H DMADLE
Sbjct: 128 AILYPSCYDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 187
Query: 221 LKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFG 280
L+E + K R+ R + +G + G I PL E+ L +Y A +F++E + G
Sbjct: 188 LQEAQ--------KHRL--RLVATDGAFSMDGDIAPLQEICCLASRYGALVFMDECHATG 237
Query: 281 VLGEHGRGVTEHYGINIDDIDLISANMENAL-ASIGGFCCGRSFVIDHQRLSGQGYCFSA 339
LG GRG E G+ +D + +I++ + AL + GG+ G ++ R + Y FS
Sbjct: 238 FLGPTGRGTDELLGV-MDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSN 296
Query: 340 SLPPLLAAAAIEALNIMEENPGIFAVLKEKCGQIHKALQGISGLKVVGESLSPAFHLQLE 399
SLPP + A +AL+++ + I + K + S ++ G ++S A H
Sbjct: 297 SLPPAVVGCASKALDLLMGSNTIVQSMAAKTQRFR------SKMEAAGFTISGASHPICP 350
Query: 400 ESTGSREQDVRLLQEIVDQCMNRSIALTQARYLEKEEKCLPPPSIRVVVTVEQTEEELER 459
G D RL + D + R I + Y + IRV ++ +EE+++R
Sbjct: 351 VMLG----DARLASRMADDMLKRGIFVIGFSYPVVPK---GKARIRVQISAVHSEEDIDR 403
Query: 460 AASTIKEVAQ 469
EV +
Sbjct: 404 CVEAFVEVGR 413
>gi|40316939 5-aminolevulinate synthase 1 [Homo sapiens]
Length = 640
Score = 127 bits (318), Expect = 3e-29
Identities = 78/271 (28%), Positives = 141/271 (52%), Gaps = 13/271 (4%)
Query: 93 TVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRL 152
+++ K+ + S ++LG+ +PRV A + +LK++G G G R GT H+DLE L
Sbjct: 238 SLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEREL 297
Query: 153 AKFMKTEEAIIYSYGFATIASAIPAYSKR--GDIVFVDRAACFAIQKGLQASRSDIKLFK 210
A + A+++S F S + +K G ++ D ++ +G++ SR +F+
Sbjct: 298 ADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFR 357
Query: 211 HNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKAR 270
HND++ L LL+ D P + + E ++ G +CPL EL + +++ A
Sbjct: 358 HNDVSHLRELLQR---SDPSVP-------KIVAFETVHSMDGAVCPLEELCDVAHEFGAI 407
Query: 271 IFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRL 330
F++E + G+ G G G+ + G+ + +D+IS + A +GG+ S +ID R
Sbjct: 408 TFVDEVHAVGLYGARGGGIGDRDGV-MPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRS 466
Query: 331 SGQGYCFSASLPPLLAAAAIEALNIMEENPG 361
G+ F+ SLPP+L A A+E++ I++ G
Sbjct: 467 YAAGFIFTTSLPPMLLAGALESVRILKSAEG 497
>gi|4502025 5-aminolevulinate synthase 1 [Homo sapiens]
Length = 640
Score = 127 bits (318), Expect = 3e-29
Identities = 78/271 (28%), Positives = 141/271 (52%), Gaps = 13/271 (4%)
Query: 93 TVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRL 152
+++ K+ + S ++LG+ +PRV A + +LK++G G G R GT H+DLE L
Sbjct: 238 SLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEREL 297
Query: 153 AKFMKTEEAIIYSYGFATIASAIPAYSKR--GDIVFVDRAACFAIQKGLQASRSDIKLFK 210
A + A+++S F S + +K G ++ D ++ +G++ SR +F+
Sbjct: 298 ADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFR 357
Query: 211 HNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKAR 270
HND++ L LL+ D P + + E ++ G +CPL EL + +++ A
Sbjct: 358 HNDVSHLRELLQR---SDPSVP-------KIVAFETVHSMDGAVCPLEELCDVAHEFGAI 407
Query: 271 IFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRL 330
F++E + G+ G G G+ + G+ + +D+IS + A +GG+ S +ID R
Sbjct: 408 TFVDEVHAVGLYGARGGGIGDRDGV-MPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRS 466
Query: 331 SGQGYCFSASLPPLLAAAAIEALNIMEENPG 361
G+ F+ SLPP+L A A+E++ I++ G
Sbjct: 467 YAAGFIFTTSLPPMLLAGALESVRILKSAEG 497
>gi|83977444 5-aminolevulinate synthase 2 isoform c precursor [Homo
sapiens]
Length = 574
Score = 123 bits (308), Expect = 4e-28
Identities = 75/269 (27%), Positives = 142/269 (52%), Gaps = 13/269 (4%)
Query: 95 VNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAK 154
V K+ + S ++LG+ +P+V A +L+++G G G R GT H++LE LA+
Sbjct: 173 VASKDVSVWCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAE 232
Query: 155 FMKTEEAIIYSYGFATIASAIPAYSK--RGDIVFVDRAACFAIQKGLQASRSDIKLFKHN 212
+ + A+++S F S + +K G ++ D ++ +G++ S + +F+HN
Sbjct: 233 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHN 292
Query: 213 DMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIF 272
D L++LL ++ NP+ ++ + E ++ G ICPL EL + ++Y A F
Sbjct: 293 DPDHLKKLL------EKSNPKIPKI----VAFETVHSMDGAICPLEELCDVSHQYGALTF 342
Query: 273 LEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSG 332
++E + G+ G G G+ E GI + ID+IS + A +GG+ ++D R
Sbjct: 343 VDEVHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA 401
Query: 333 QGYCFSASLPPLLAAAAIEALNIMEENPG 361
G+ F+ SLPP++ + A+E++ +++ G
Sbjct: 402 AGFIFTTSLPPMVLSGALESVRLLKGEEG 430
>gi|83977440 5-aminolevulinate synthase 2 isoform b precursor [Homo
sapiens]
Length = 550
Score = 123 bits (308), Expect = 4e-28
Identities = 75/269 (27%), Positives = 142/269 (52%), Gaps = 13/269 (4%)
Query: 95 VNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAK 154
V K+ + S ++LG+ +P+V A +L+++G G G R GT H++LE LA+
Sbjct: 149 VASKDVSVWCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAE 208
Query: 155 FMKTEEAIIYSYGFATIASAIPAYSK--RGDIVFVDRAACFAIQKGLQASRSDIKLFKHN 212
+ + A+++S F S + +K G ++ D ++ +G++ S + +F+HN
Sbjct: 209 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHN 268
Query: 213 DMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIF 272
D L++LL ++ NP+ ++ + E ++ G ICPL EL + ++Y A F
Sbjct: 269 DPDHLKKLL------EKSNPKIPKI----VAFETVHSMDGAICPLEELCDVSHQYGALTF 318
Query: 273 LEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSG 332
++E + G+ G G G+ E GI + ID+IS + A +GG+ ++D R
Sbjct: 319 VDEVHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA 377
Query: 333 QGYCFSASLPPLLAAAAIEALNIMEENPG 361
G+ F+ SLPP++ + A+E++ +++ G
Sbjct: 378 AGFIFTTSLPPMVLSGALESVRLLKGEEG 406
>gi|83977442 5-aminolevulinate synthase 2 isoform a precursor [Homo
sapiens]
Length = 587
Score = 123 bits (308), Expect = 4e-28
Identities = 75/269 (27%), Positives = 142/269 (52%), Gaps = 13/269 (4%)
Query: 95 VNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAK 154
V K+ + S ++LG+ +P+V A +L+++G G G R GT H++LE LA+
Sbjct: 186 VASKDVSVWCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAE 245
Query: 155 FMKTEEAIIYSYGFATIASAIPAYSK--RGDIVFVDRAACFAIQKGLQASRSDIKLFKHN 212
+ + A+++S F S + +K G ++ D ++ +G++ S + +F+HN
Sbjct: 246 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHN 305
Query: 213 DMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIF 272
D L++LL ++ NP+ ++ + E ++ G ICPL EL + ++Y A F
Sbjct: 306 DPDHLKKLL------EKSNPKIPKI----VAFETVHSMDGAICPLEELCDVSHQYGALTF 355
Query: 273 LEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSG 332
++E + G+ G G G+ E GI + ID+IS + A +GG+ ++D R
Sbjct: 356 VDEVHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA 414
Query: 333 QGYCFSASLPPLLAAAAIEALNIMEENPG 361
G+ F+ SLPP++ + A+E++ +++ G
Sbjct: 415 AGFIFTTSLPPMVLSGALESVRLLKGEEG 443
>gi|71725360 zinc finger protein 609 [Homo sapiens]
Length = 1411
Score = 33.5 bits (75), Expect = 0.43
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 46 LQERSDLTVKEKEELI-EEWQPEPLVPPVPKDHPALNYNIVSGPPSHK 92
+ +++++ +KE+E + EEW+ +P +PP P+L + SGP K
Sbjct: 1021 VDKKAEMGLKEREAALKEEWKQKPSIPPTLTKAPSLTDLVKSGPGKAK 1068
>gi|24308113 KIF1 binding protein [Homo sapiens]
Length = 621
Score = 32.7 bits (73), Expect = 0.73
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 178 YSKRGDIVFVDRAACFAIQKGLQASRSD----IKLFKHNDMADLERLLKEQEIEDQKNPR 233
+ ++G+I C + + Q S D + L K +++ R L+++E++++++ R
Sbjct: 304 HQRKGEIARCWIKYCLTLMQNAQLSMQDNIGELDLDKQSEL----RALRKKELDEEESIR 359
Query: 234 KARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEH 285
K V TG +C V+ K Y + EE+ +LG+H
Sbjct: 360 KKAVQ----------FGTGELCDAISAVEEKVSYLRPLDFEEARELFLLGQH 401
>gi|4507689 transient receptor potential cation channel, subfamily M,
member 2 [Homo sapiens]
Length = 1503
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 24 HLILEGILILWIIRLLFSKTYK-LQERSDLTVK-EKEELIEEWQPEPLVPP 72
+L+ IL+L ++ +F+ T++ +QE +D K ++ +LIEE+ P PP
Sbjct: 1032 YLLFTNILLLNLLIAMFNYTFQQVQEHTDQIWKFQRHDLIEEYHGRPAAPP 1082
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 30.8 bits (68), Expect = 2.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 55 KEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGP 88
+EKEE E QPEP+ P P+ P L S P
Sbjct: 459 EEKEEKESEPQPEPVAQPQPQSQPQLQLQSQSQP 492
>gi|188528675 slit homolog 1 [Homo sapiens]
Length = 1534
Score = 30.4 bits (67), Expect = 3.6
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 199 LQASRSDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLP 258
L+ + ++I ND A L++L Q +E+Q + +E L +N + LP
Sbjct: 66 LELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLP 125
Query: 259 ELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGG 316
EL+ + +R+ L E+ + + RG T+ + +D + IS E A ++ G
Sbjct: 126 ELLFQNNQALSRLDLSENAIQAIPRKAFRGATDLKNLQLDK-NQISCIEEGAFRALRG 182
>gi|238859593 UDP-glucose ceramide glucosyltransferase-like 2 [Homo
sapiens]
Length = 1516
Score = 29.6 bits (65), Expect = 6.2
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 267 YKARIFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASI 314
Y +L E ++F LGE +G+ E+ GIN +++ ++ ++S+
Sbjct: 888 YAEDFYLLEKITFSNLGEKIKGIVENMGINANNMSDFIMKVDALMSSV 935
>gi|47106052 coiled-coil domain containing 103 [Homo sapiens]
Length = 242
Score = 29.6 bits (65), Expect = 6.2
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 367 KEKCGQIHKALQGISGLKVVGESLSPAFHLQLEESTGSREQDVRLLQEIVD 417
+E C + + LQ + + V E LS LEE +G +++ RLLQE+++
Sbjct: 188 RESCKGLFQKLQAMGNPRSVKEGLSWE-EQGLEEQSGGLQEEERLLQELLE 237
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,821,734
Number of Sequences: 37866
Number of extensions: 800212
Number of successful extensions: 2648
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2616
Number of HSP's gapped (non-prelim): 20
length of query: 473
length of database: 18,247,518
effective HSP length: 106
effective length of query: 367
effective length of database: 14,233,722
effective search space: 5223775974
effective search space used: 5223775974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.