BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|5453924 DNA-directed DNA polymerase delta 2 [Homo sapiens] (469 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|187828568 DNA-directed DNA polymerase delta 2 [Homo sapiens] 948 0.0 gi|5453924 DNA-directed DNA polymerase delta 2 [Homo sapiens] 948 0.0 gi|205277396 dynactin 1 isoform 4 [Homo sapiens] 31 2.8 gi|205277392 dynactin 1 isoform 3 [Homo sapiens] 31 2.8 gi|13259508 dynactin 1 isoform 2 [Homo sapiens] 31 2.8 gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 31 2.8 gi|223972648 t-SNARE domain containing 1 [Homo sapiens] 30 4.7 gi|148746195 trichohyalin [Homo sapiens] 30 6.1 gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo... 29 8.0 gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s... 29 8.0 gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s... 29 8.0 gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo s... 29 8.0 gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 29 8.0 gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 29 8.0 gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 29 8.0 gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Hom... 29 8.0 gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Hom... 29 8.0 gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Hom... 29 8.0 gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Hom... 29 8.0 gi|20270327 transmembrane 4 L six family member 18 [Homo sapiens] 29 8.0 >gi|187828568 DNA-directed DNA polymerase delta 2 [Homo sapiens] Length = 469 Score = 948 bits (2450), Expect = 0.0 Identities = 469/469 (100%), Positives = 469/469 (100%) Query: 1 MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQ 60 MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQ Sbjct: 1 MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQ 60 Query: 61 MRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQ 120 MRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQ Sbjct: 61 MRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQ 120 Query: 121 PPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFAD 180 PPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFAD Sbjct: 121 PPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFAD 180 Query: 181 LAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR 240 LAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR Sbjct: 181 LAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR 240 Query: 241 VILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 300 VILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD Sbjct: 241 VILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 300 Query: 301 PTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMED 360 PTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMED Sbjct: 301 PTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMED 360 Query: 361 HLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPED 420 HLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPED Sbjct: 361 HLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPED 420 Query: 421 QTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAEDDDLGGLGLGP 469 QTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAEDDDLGGLGLGP Sbjct: 421 QTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAEDDDLGGLGLGP 469 >gi|5453924 DNA-directed DNA polymerase delta 2 [Homo sapiens] Length = 469 Score = 948 bits (2450), Expect = 0.0 Identities = 469/469 (100%), Positives = 469/469 (100%) Query: 1 MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQ 60 MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQ Sbjct: 1 MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQ 60 Query: 61 MRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQ 120 MRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQ Sbjct: 61 MRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQ 120 Query: 121 PPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFAD 180 PPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFAD Sbjct: 121 PPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFAD 180 Query: 181 LAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR 240 LAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR Sbjct: 181 LAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR 240 Query: 241 VILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 300 VILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD Sbjct: 241 VILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 300 Query: 301 PTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMED 360 PTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMED Sbjct: 301 PTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMED 360 Query: 361 HLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPED 420 HLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPED Sbjct: 361 HLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPED 420 Query: 421 QTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAEDDDLGGLGLGP 469 QTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAEDDDLGGLGLGP Sbjct: 421 QTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAEDDDLGGLGLGP 469 >gi|205277396 dynactin 1 isoform 4 [Homo sapiens] Length = 1139 Score = 30.8 bits (68), Expect = 2.8 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%) Query: 179 ADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHV 238 A+ P KP PP++ R L + + G G L + ++ + L +GE+ S A+V Sbjct: 780 AERPPSKP-PPVEL-RAAALRAEITDAEGLGLKLEDRETVIKELKKSLKIKGEELSEANV 837 Query: 239 SRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASV 290 +L L S + + + I K + ++TQA + K +E + L A + Sbjct: 838 RLSLLEKKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQADI 889 >gi|205277392 dynactin 1 isoform 3 [Homo sapiens] Length = 1253 Score = 30.8 bits (68), Expect = 2.8 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%) Query: 179 ADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHV 238 A+ P KP PP++ R L + + G G L + ++ + L +GE+ S A+V Sbjct: 894 AERPPSKP-PPVEL-RAAALRAEITDAEGLGLKLEDRETVIKELKKSLKIKGEELSEANV 951 Query: 239 SRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASV 290 +L L S + + + I K + ++TQA + K +E + L A + Sbjct: 952 RLSLLEKKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQADI 1003 >gi|13259508 dynactin 1 isoform 2 [Homo sapiens] Length = 1144 Score = 30.8 bits (68), Expect = 2.8 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%) Query: 179 ADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHV 238 A+ P KP PP++ R L + + G G L + ++ + L +GE+ S A+V Sbjct: 780 AERPPSKP-PPVEL-RAAALRAEITDAEGLGLKLEDRETVIKELKKSLKIKGEELSEANV 837 Query: 239 SRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASV 290 +L L S + + + I K + ++TQA + K +E + L A + Sbjct: 838 RLSLLEKKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQADI 889 >gi|13259510 dynactin 1 isoform 1 [Homo sapiens] Length = 1278 Score = 30.8 bits (68), Expect = 2.8 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%) Query: 179 ADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHV 238 A+ P KP PP++ R L + + G G L + ++ + L +GE+ S A+V Sbjct: 914 AERPPSKP-PPVEL-RAAALRAEITDAEGLGLKLEDRETVIKELKKSLKIKGEELSEANV 971 Query: 239 SRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASV 290 +L L S + + + I K + ++TQA + K +E + L A + Sbjct: 972 RLSLLEKKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQADI 1023 >gi|223972648 t-SNARE domain containing 1 [Homo sapiens] Length = 513 Score = 30.0 bits (66), Expect = 4.7 Identities = 15/35 (42%), Positives = 23/35 (65%) Query: 249 SHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEIL 283 S + + RDS++ A+ T KT AAS +VK + E+L Sbjct: 289 SDTQELRDSLHTAQQETNKTIAASASSVKQMAELL 323 >gi|148746195 trichohyalin [Homo sapiens] Length = 1943 Score = 29.6 bits (65), Expect = 6.1 Identities = 14/36 (38%), Positives = 22/36 (61%) Query: 108 LREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIK 143 LR+ EE L PQ KY +++L LE++ QR++ Sbjct: 1803 LRQEREEQQLRPQQRDGKYRWEEEQLQLEEQEQRLR 1838 >gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo sapiens] Length = 674 Score = 29.3 bits (64), Expect = 8.0 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 216 QLLVDVVT----GQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAA 271 Q+L D V+ G+ GD + S+ H R +LAG +++ T +D AK ++ T Sbjct: 321 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKD----AKVISVSTGTK 376 Query: 272 SVEAVKMLD 280 + M D Sbjct: 377 CINGEYMSD 385 >gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo sapiens] Length = 714 Score = 29.3 bits (64), Expect = 8.0 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 216 QLLVDVVT----GQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAA 271 Q+L D V+ G+ GD + S+ H R +LAG +++ T +D AK ++ T Sbjct: 321 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKD----AKVISVSTGTK 376 Query: 272 SVEAVKMLD 280 + M D Sbjct: 377 CINGEYMSD 385 >gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo sapiens] Length = 741 Score = 29.3 bits (64), Expect = 8.0 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 216 QLLVDVVT----GQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAA 271 Q+L D V+ G+ GD + S+ H R +LAG +++ T +D AK ++ T Sbjct: 321 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKD----AKVISVSTGTK 376 Query: 272 SVEAVKMLD 280 + M D Sbjct: 377 CINGEYMSD 385 >gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo sapiens] Length = 701 Score = 29.3 bits (64), Expect = 8.0 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 216 QLLVDVVT----GQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAA 271 Q+L D V+ G+ GD + S+ H R +LAG +++ T +D AK ++ T Sbjct: 321 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKD----AKVISVSTGTK 376 Query: 272 SVEAVKMLD 280 + M D Sbjct: 377 CINGEYMSD 385 >gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] Length = 1516 Score = 29.3 bits (64), Expect = 8.0 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%) Query: 91 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPD--DELVLEDELQRIKLKGTI 148 C + G K +PL + + +L +PP + PD E + D LQ+ KG + Sbjct: 944 CRLNGQAVKPLPLT---CPDFQDPFSLTEKPPAEFCLSPDGSSEAISIDLLQK---KGLV 997 Query: 149 DVSKLVTGTVLAVFGSVRDDG 169 + ++A FG+ RD G Sbjct: 998 KAVNIAVDLIVAHFGTSRDPG 1018 >gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] Length = 1516 Score = 29.3 bits (64), Expect = 8.0 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%) Query: 91 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPD--DELVLEDELQRIKLKGTI 148 C + G K +PL + + +L +PP + PD E + D LQ+ KG + Sbjct: 944 CRLNGQAVKPLPLT---CPDFQDPFSLTEKPPAEFCLSPDGSSEAISIDLLQK---KGLV 997 Query: 149 DVSKLVTGTVLAVFGSVRDDG 169 + ++A FG+ RD G Sbjct: 998 KAVNIAVDLIVAHFGTSRDPG 1018 >gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] Length = 1303 Score = 29.3 bits (64), Expect = 8.0 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Query: 180 DLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE-SLLGTQLLVDVVTGQLGDEGEQCSA 235 D +P AP D VL GLG GGGGG+ S+L L D T G + + +A Sbjct: 1112 DASPPATAP---YDPRVLAAGGLGQGGGGGQSSVLSGISLYDPRTPNAGGKATEPAA 1165 >gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Homo sapiens] Length = 3710 Score = 29.3 bits (64), Expect = 8.0 Identities = 14/31 (45%), Positives = 19/31 (61%) Query: 199 VSGLGLGGGGGESLLGTQLLVDVVTGQLGDE 229 VS + + GG + LLGT LL+D V + DE Sbjct: 804 VSSIPIISGGTKGLLGTSLLLDTVESESDDE 834 >gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Homo sapiens] Length = 3585 Score = 29.3 bits (64), Expect = 8.0 Identities = 14/31 (45%), Positives = 19/31 (61%) Query: 199 VSGLGLGGGGGESLLGTQLLVDVVTGQLGDE 229 VS + + GG + LLGT LL+D V + DE Sbjct: 804 VSSIPIISGGTKGLLGTSLLLDTVESESDDE 834 >gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Homo sapiens] Length = 3628 Score = 29.3 bits (64), Expect = 8.0 Identities = 14/31 (45%), Positives = 19/31 (61%) Query: 199 VSGLGLGGGGGESLLGTQLLVDVVTGQLGDE 229 VS + + GG + LLGT LL+D V + DE Sbjct: 847 VSSIPIISGGTKGLLGTSLLLDTVESESDDE 877 >gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Homo sapiens] Length = 3753 Score = 29.3 bits (64), Expect = 8.0 Identities = 14/31 (45%), Positives = 19/31 (61%) Query: 199 VSGLGLGGGGGESLLGTQLLVDVVTGQLGDE 229 VS + + GG + LLGT LL+D V + DE Sbjct: 847 VSSIPIISGGTKGLLGTSLLLDTVESESDDE 877 >gi|20270327 transmembrane 4 L six family member 18 [Homo sapiens] Length = 201 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 323 STLQLVTNPYQATIDG--VRFLGTSGQNVSDIFRYSSMEDHLEILEWTL 369 S L LV PY T+DG F GT+G+ ++D + + ++EW + Sbjct: 111 SALGLVQGPYCRTLDGWEYAFEGTAGRFLTDSSIWIQCLEPAHVVEWNI 159 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,686,412 Number of Sequences: 37866 Number of extensions: 859684 Number of successful extensions: 1960 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 1952 Number of HSP's gapped (non-prelim): 20 length of query: 469 length of database: 18,247,518 effective HSP length: 106 effective length of query: 363 effective length of database: 14,233,722 effective search space: 5166841086 effective search space used: 5166841086 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.