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Search of human proteins with 5453908
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453908 phosphatidylinositol transfer protein, alpha [Homo
sapiens]
(270 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453908 phosphatidylinositol transfer protein, alpha [Homo sa... 568 e-162
gi|6912594 phosphatidylinositol transfer protein, beta [Homo sap... 465 e-131
gi|195927017 phosphatidylinositol transfer protein, membrane-ass... 238 5e-63
gi|195927015 phosphatidylinositol transfer protein, membrane-ass... 238 5e-63
gi|24308237 phosphatidylinositol transfer protein, membrane-asso... 229 1e-60
gi|32307142 phosphatidylinositol transfer protein, cytoplasmic 1... 204 9e-53
gi|32307140 phosphatidylinositol transfer protein, cytoplasmic 1... 203 1e-52
gi|34916028 solute carrier family 16 (monocarboxylic acid transp... 30 2.9
gi|22035606 mitogen-activated protein kinase kinase kinase kinas... 29 3.8
gi|22035602 mitogen-activated protein kinase kinase kinase kinas... 29 3.8
gi|22035604 mitogen-activated protein kinase kinase kinase kinas... 29 3.8
gi|4507401 transcription factor A, mitochondrial [Homo sapiens] 28 6.5
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 28 6.5
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 28 6.5
gi|154426270 early undifferentiated retina and lens isoform 3 [H... 28 6.5
gi|154426331 early undifferentiated retina and lens isoform 1 [H... 28 6.5
gi|154426302 early undifferentiated retina and lens isoform 2 [H... 28 6.5
gi|75677365 dynein heavy chain domain 3 [Homo sapiens] 28 6.5
gi|4757982 cholinergic receptor, nicotinic, alpha 6 [Homo sapiens] 28 8.4
gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens] 28 8.4
gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens] 28 8.4
>gi|5453908 phosphatidylinositol transfer protein, alpha [Homo
sapiens]
Length = 270
Score = 568 bits (1464), Expect = e-162
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MVLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDGEKGQYTHK 60
MVLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDGEKGQYTHK
Sbjct: 1 MVLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDGEKGQYTHK 60
Query: 61 IYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLG 120
IYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLG
Sbjct: 61 IYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLG 120
Query: 121 TQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQE 180
TQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQE
Sbjct: 121 TQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQE 180
Query: 181 LVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTM 240
LVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTM
Sbjct: 181 LVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTM 240
Query: 241 DDIRRMEEETKRQLDEMRQKDPVKGMTADD 270
DDIRRMEEETKRQLDEMRQKDPVKGMTADD
Sbjct: 241 DDIRRMEEETKRQLDEMRQKDPVKGMTADD 270
>gi|6912594 phosphatidylinositol transfer protein, beta [Homo
sapiens]
Length = 271
Score = 465 bits (1197), Expect = e-131
Identities = 210/270 (77%), Positives = 242/270 (89%)
Query: 1 MVLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDGEKGQYTHK 60
MVL+KE+RV+LP SV EYQVGQLYSVAEASKNETGGGEG+EVL NEPYEKDGEKGQYTHK
Sbjct: 1 MVLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGEKGQYTHK 60
Query: 61 IYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLG 120
IYHL+SKVP FVRM+APEG+L HEKAWNAYPYCRT++TNEYMK+DF IKIETWHKPDLG
Sbjct: 61 IYHLKSKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLG 120
Query: 121 TQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQE 180
T ENVH L+P WK VE V+IDIADRSQV DYKA+EDPA F+S+KT RGPLGPNWK+E
Sbjct: 121 TLENVHGLDPNTWKTVEIVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKE 180
Query: 181 LVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTM 240
L N DCP MCAYKLVT+KFKWWGLQ+KVENFI KQE+R+FTNFHRQLFCW+DKW+DLTM
Sbjct: 181 LANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTM 240
Query: 241 DDIRRMEEETKRQLDEMRQKDPVKGMTADD 270
+DIRRME+ET+++L+ MR++ V+G +A D
Sbjct: 241 EDIRRMEDETQKELETMRKRGSVRGTSAAD 270
>gi|195927017 phosphatidylinositol transfer protein,
membrane-associated isoform b [Homo sapiens]
Length = 1243
Score = 238 bits (606), Expect = 5e-63
Identities = 124/262 (47%), Positives = 168/262 (64%), Gaps = 7/262 (2%)
Query: 2 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGG-GEGVEVLVNEPY-EKDGEKGQYTH 59
+L+KEY ++LP+S+DEYQV QLY + + S+ E+ G G GVE+L N PY + G GQYTH
Sbjct: 1 MLIKEYHILLPMSLDEYQVAQLYMIQKKSREESSGEGSGVEILANRPYTDGPGGSGQYTH 60
Query: 60 KIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDL 119
K+YH+ S +P + R L P+ AL + E++WNAYPY RT T ++ E F I+IET++ PD
Sbjct: 61 KVYHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCPFV-EKFSIEIETYYLPDG 119
Query: 120 GTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQ 179
G Q NV L + IDI R V +YKAEEDP + S+KTGRGPL +W +
Sbjct: 120 GQQPNVFNLSGAERRQRILDTIDIV-RDAVAPGEYKAEEDPRLYHSVKTGRGPLSDDWAR 178
Query: 180 ELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQE-RRLFTNFHRQLFCWLDKWVDL 238
+ P MCAYKL V+F++WG+Q K+E FIH RR+ HRQ +CW D+W +L
Sbjct: 179 TAA--QTGPLMCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWTEL 236
Query: 239 TMDDIRRMEEETKRQLDEMRQK 260
+M DIR +EEET R L + K
Sbjct: 237 SMADIRALEEETARMLAQRMAK 258
>gi|195927015 phosphatidylinositol transfer protein,
membrane-associated isoform a [Homo sapiens]
Length = 1244
Score = 238 bits (606), Expect = 5e-63
Identities = 124/262 (47%), Positives = 168/262 (64%), Gaps = 7/262 (2%)
Query: 2 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGG-GEGVEVLVNEPY-EKDGEKGQYTH 59
+L+KEY ++LP+S+DEYQV QLY + + S+ E+ G G GVE+L N PY + G GQYTH
Sbjct: 1 MLIKEYHILLPMSLDEYQVAQLYMIQKKSREESSGEGSGVEILANRPYTDGPGGSGQYTH 60
Query: 60 KIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDL 119
K+YH+ S +P + R L P+ AL + E++WNAYPY RT T ++ E F I+IET++ PD
Sbjct: 61 KVYHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCPFV-EKFSIEIETYYLPDG 119
Query: 120 GTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQ 179
G Q NV L + IDI R V +YKAEEDP + S+KTGRGPL +W +
Sbjct: 120 GQQPNVFNLSGAERRQRILDTIDIV-RDAVAPGEYKAEEDPRLYHSVKTGRGPLSDDWAR 178
Query: 180 ELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQE-RRLFTNFHRQLFCWLDKWVDL 238
+ P MCAYKL V+F++WG+Q K+E FIH RR+ HRQ +CW D+W +L
Sbjct: 179 TAA--QTGPLMCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWTEL 236
Query: 239 TMDDIRRMEEETKRQLDEMRQK 260
+M DIR +EEET R L + K
Sbjct: 237 SMADIRALEEETARMLAQRMAK 258
>gi|24308237 phosphatidylinositol transfer protein,
membrane-associated 2 [Homo sapiens]
Length = 1349
Score = 229 bits (585), Expect = 1e-60
Identities = 116/256 (45%), Positives = 166/256 (64%), Gaps = 6/256 (2%)
Query: 2 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNET-GGGEGVEVLVNEPY-EKDGEKGQYTH 59
+++KEYR+ LP++V+EY++ QLY + + S+NET G G GVE+L N PY + G GQYTH
Sbjct: 1 MIIKEYRIPLPMTVEEYRIAQLYMIQKKSRNETYGEGSGVEILENRPYTDGPGGSGQYTH 60
Query: 60 KIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDL 119
K+YH+ +P++ R + P+ AL + E++WNAYPY RT T ++ E F I IET++K D
Sbjct: 61 KVYHVGMHIPSWFRSILPKAALRVVEESWNAYPYTRTRFTCPFV-EKFSIDIETFYKTDA 119
Query: 120 GTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQ 179
G +V L P + +IDI + V +YK EEDP F+S KT RGPL NW +
Sbjct: 120 GENPDVFNLSPVEKNQLTIDFIDIV-KDPVPHNEYKTEEDPKLFQSTKTQRGPLSENWIE 178
Query: 180 ELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQE-RRLFTNFHRQLFCWLDKWVDL 238
E Q P MCAYKL V+F++WG+Q+K+E FIH RR+ HRQ +CW D+W L
Sbjct: 179 EYKKQV-FPIMCAYKLCKVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWYGL 237
Query: 239 TMDDIRRMEEETKRQL 254
+M++IR +E+E + L
Sbjct: 238 SMENIRELEKEAQLML 253
>gi|32307142 phosphatidylinositol transfer protein, cytoplasmic 1
isoform b [Homo sapiens]
Length = 268
Score = 204 bits (518), Expect = 9e-53
Identities = 109/253 (43%), Positives = 157/253 (62%), Gaps = 10/253 (3%)
Query: 2 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDGE-KGQYTHK 60
+LLKEYR+ +P++VDEY++GQLY +++ S ++ GEGVEV+ NEP+E GQ+T K
Sbjct: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK 60
Query: 61 IYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLG 120
+L SK+P++ R + P+ + EKAWN YPY T T ++ + F I IET ++ + G
Sbjct: 61 RVYLNSKLPSWARAVVPK-IFYVTEKAWNYYPYTITEYTCSFLPK-FSIHIETKYEDNKG 118
Query: 121 TQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQE 180
+ + + E + + E +IDIA ++ + YK EDP FKS KTGRG L W+
Sbjct: 119 SNDTIFDNEAKDVER-EVCFIDIAC-DEIPERYYKESEDPKHFKSEKTGRGQLREGWRDS 176
Query: 181 LVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTM 240
P MC+YKLVTVKF+ WGLQ +VE F+HK R + HRQ F W+D+W D+TM
Sbjct: 177 -----HQPIMCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTM 231
Query: 241 DDIRRMEEETKRQ 253
DD+R E+ Q
Sbjct: 232 DDVREYEKNMHEQ 244
>gi|32307140 phosphatidylinositol transfer protein, cytoplasmic 1
isoform a [Homo sapiens]
Length = 332
Score = 203 bits (516), Expect = 1e-52
Identities = 108/251 (43%), Positives = 157/251 (62%), Gaps = 10/251 (3%)
Query: 2 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDGE-KGQYTHK 60
+LLKEYR+ +P++VDEY++GQLY +++ S ++ GEGVEV+ NEP+E GQ+T K
Sbjct: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK 60
Query: 61 IYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLG 120
+L SK+P++ R + P+ + EKAWN YPY T T ++ + F I IET ++ + G
Sbjct: 61 RVYLNSKLPSWARAVVPK-IFYVTEKAWNYYPYTITEYTCSFLPK-FSIHIETKYEDNKG 118
Query: 121 TQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQE 180
+ + + E + + E +IDIA ++ + YK EDP FKS KTGRG L W+
Sbjct: 119 SNDTIFDNEAKDVER-EVCFIDIAC-DEIPERYYKESEDPKHFKSEKTGRGQLREGWRDS 176
Query: 181 LVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTM 240
P MC+YKLVTVKF+ WGLQ +VE F+HK R + HRQ F W+D+W D+TM
Sbjct: 177 -----HQPIMCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTM 231
Query: 241 DDIRRMEEETK 251
D++R E T+
Sbjct: 232 DEVREFERATQ 242
>gi|34916028 solute carrier family 16 (monocarboxylic acid
transporters), member 9 [Homo sapiens]
Length = 509
Score = 29.6 bits (65), Expect = 2.9
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 78 EGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKH-- 135
E +NI +K++++ CR + N K+D L+ HK T H EPE +K
Sbjct: 222 EENINILDKSYSSEEKCRITLANGDWKQDSLL-----HKNPTVT----HTKEPETYKKKV 272
Query: 136 VEAVYI--DIADRSQVLSKDYKAE 157
E Y +A R L K+Y E
Sbjct: 273 AEQTYFCKQLAKRKWQLYKNYCGE 296
>gi|22035606 mitogen-activated protein kinase kinase kinase kinase 4
isoform 3 [Homo sapiens]
Length = 1212
Score = 29.3 bits (64), Expect = 3.8
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 210 ENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKD 261
+ + +Q+ R + RQL K ++ + RR+EE+ +R+ + RQ++
Sbjct: 373 QQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQE 424
>gi|22035602 mitogen-activated protein kinase kinase kinase kinase 4
isoform 1 [Homo sapiens]
Length = 1166
Score = 29.3 bits (64), Expect = 3.8
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 210 ENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKD 261
+ + +Q+ R + RQL K ++ + RR+EE+ +R+ + RQ++
Sbjct: 373 QQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQE 424
>gi|22035604 mitogen-activated protein kinase kinase kinase kinase 4
isoform 2 [Homo sapiens]
Length = 1320
Score = 29.3 bits (64), Expect = 3.8
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 210 ENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKD 261
+ + +Q+ R + RQL K ++ + RR+EE+ +R+ + RQ++
Sbjct: 373 QQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQE 424
>gi|4507401 transcription factor A, mitochondrial [Homo sapiens]
Length = 246
Score = 28.5 bits (62), Expect = 6.5
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 194 KLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQ 253
KL TVK W L + + + + T +H ++ W ++ +++ D+ R + +R+
Sbjct: 181 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK 240
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 28.5 bits (62), Expect = 6.5
Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 33/170 (19%)
Query: 98 ITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAW------KHVEAVYIDIADRSQVLS 151
+ + Y E L + + K D+ + +LE E + +EA I + ++LS
Sbjct: 1923 VIDGYADEKTLFERQIQEKTDI-----IDRLEQELLCASNRLQELEAEQQQIQEERELLS 1977
Query: 152 KDYKAEEDPAKFKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVEN 211
+ +A +K GP+ +Q+L+ + + KL+ K + KV +
Sbjct: 1978 RQKEA---------MKAEAGPV----EQQLLQETE-------KLMKEKLEVQCQAEKVRD 2017
Query: 212 FIHKQERRLFTNFHRQL--FCWLDKWVDLTMDDIRRMEEETKRQLDEMRQ 259
+ KQ + L + Q+ F L++ + + D+R+ + ++QL++MR+
Sbjct: 2018 DLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRK 2067
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 28.5 bits (62), Expect = 6.5
Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 33/170 (19%)
Query: 98 ITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAW------KHVEAVYIDIADRSQVLS 151
+ + Y E L + + K D+ + +LE E + +EA I + ++LS
Sbjct: 1923 VIDGYADEKTLFERQIQEKTDI-----IDRLEQELLCASNRLQELEAEQQQIQEERELLS 1977
Query: 152 KDYKAEEDPAKFKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVEN 211
+ +A +K GP+ +Q+L+ + + KL+ K + KV +
Sbjct: 1978 RQKEA---------MKAEAGPV----EQQLLQETE-------KLMKEKLEVQCQAEKVRD 2017
Query: 212 FIHKQERRLFTNFHRQL--FCWLDKWVDLTMDDIRRMEEETKRQLDEMRQ 259
+ KQ + L + Q+ F L++ + + D+R+ + ++QL++MR+
Sbjct: 2018 DLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRK 2067
>gi|154426270 early undifferentiated retina and lens isoform 3 [Homo
sapiens]
Length = 221
Score = 28.5 bits (62), Expect = 6.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 206 QNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKD 261
Q+ + NF HK E +L F Q+ + KW+D + I T+R L++ D
Sbjct: 117 QHHLFNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNC---TQRILEQRENTD 169
>gi|154426331 early undifferentiated retina and lens isoform 1 [Homo
sapiens]
Length = 297
Score = 28.5 bits (62), Expect = 6.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 206 QNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKD 261
Q+ + NF HK E +L F Q+ + KW+D + I T+R L++ D
Sbjct: 117 QHHLFNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNC---TQRILEQRENTD 169
>gi|154426302 early undifferentiated retina and lens isoform 2 [Homo
sapiens]
Length = 296
Score = 28.5 bits (62), Expect = 6.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 206 QNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKD 261
Q+ + NF HK E +L F Q+ + KW+D + I T+R L++ D
Sbjct: 117 QHHLFNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNC---TQRILEQRENTD 169
>gi|75677365 dynein heavy chain domain 3 [Homo sapiens]
Length = 4427
Score = 28.5 bits (62), Expect = 6.5
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 118 DLGTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEE--DPAKFKSIKTGRGPLGP 175
DLGTQEN+H+ + + ++ +A SQ + + + P K+ + +G L
Sbjct: 2938 DLGTQENIHRKVAQIF---VTMHWSVAQYSQKMLLELRRHNYVTPTKYLELLSGYKKLLG 2994
Query: 176 NWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVE 210
+QEL+ Q A KL T FK + KV+
Sbjct: 2995 EKRQELLAQ-------ANKLRTGLFKIDETREKVQ 3022
>gi|4757982 cholinergic receptor, nicotinic, alpha 6 [Homo sapiens]
Length = 494
Score = 28.1 bits (61), Expect = 8.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 153 DYKAEEDPAKFKSIKTGRGPLGPNWKQELV 182
DYK DP ++ I+T R P WK ++V
Sbjct: 92 DYKLRWDPMEYDGIETLRVPADKIWKPDIV 121
>gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]
Length = 1220
Score = 28.1 bits (61), Expect = 8.4
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 20/138 (14%)
Query: 48 YEKDGEKGQYTHKIYHLQS----KVPTFVRMLAPEGA-------LNIHEKAWNAY---PY 93
+ + G Q K+ QS VP P+ + N H+K + + P
Sbjct: 185 FSRSGPGSQLNTKLQKAQSFDVASVPPVAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQ 244
Query: 94 CRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKD 153
RT++ + + L I W+ D+ + E H+ ID+A Q L
Sbjct: 245 ARTILMQSSLPQAQLASI--WNLSDIDQDGKLTAEEFILAMHL----IDVAMSGQPLPPV 298
Query: 154 YKAEEDPAKFKSIKTGRG 171
E P F+ +++G G
Sbjct: 299 LPPEYIPPSFRRVRSGSG 316
>gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens]
Length = 1721
Score = 28.1 bits (61), Expect = 8.4
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 20/138 (14%)
Query: 48 YEKDGEKGQYTHKIYHLQS----KVPTFVRMLAPEGA-------LNIHEKAWNAY---PY 93
+ + G Q K+ QS VP P+ + N H+K + + P
Sbjct: 185 FSRSGPGSQLNTKLQKAQSFDVASVPPVAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQ 244
Query: 94 CRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKD 153
RT++ + + L I W+ D+ + E H+ ID+A Q L
Sbjct: 245 ARTILMQSSLPQAQLASI--WNLSDIDQDGKLTAEEFILAMHL----IDVAMSGQPLPPV 298
Query: 154 YKAEEDPAKFKSIKTGRG 171
E P F+ +++G G
Sbjct: 299 LPPEYIPPSFRRVRSGSG 316
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,769,179
Number of Sequences: 37866
Number of extensions: 493952
Number of successful extensions: 1340
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1299
Number of HSP's gapped (non-prelim): 28
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.