Search of human proteins with 5453688

Search of human proteins with 5453688

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5453688 heat shock 27kDa protein 3 [Homo sapiens]
         (150 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5453688 heat shock 27kDa protein 3 [Homo sapiens]                  304   2e-83
gi|4504519 heat shock 27kDa protein 2 [Homo sapiens]                   72   2e-13
gi|4504517 heat shock protein beta-1 [Homo sapiens]                    69   2e-12
gi|21389433 heat shock protein, alpha-crystallin-related, B6 [Ho...    67   4e-12
gi|4503055 crystallin, alpha A [Homo sapiens]                          65   2e-11
gi|4503057 crystallin, alpha B [Homo sapiens]                          61   4e-10
gi|7657146 heat shock 22kDa protein 8 [Homo sapiens]                   55   2e-08
gi|7657202 cardiovascular heat shock protein [Homo sapiens]            40   0.001
gi|15082238 heat shock protein, alpha-crystallin-related, B9 [Ho...    31   0.45 
gi|4826870 nucleobindin 2 [Homo sapiens]                               29   1.3  
gi|31543667 suppressor of var1, 3-like 1 [Homo sapiens]                29   1.7  
gi|66730421 ATPase type 13A5 [Homo sapiens]                            29   1.7  
gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]             29   1.7  
gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens]        28   3.8  
gi|8922976 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 [Homo sapiens]    27   8.5  
gi|26986534 Rho GTPase activating protein 12 [Homo sapiens]            27   8.5  

>gi|5453688 heat shock 27kDa protein 3 [Homo sapiens]
          Length = 150

 Score =  304 bits (778), Expect = 2e-83
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MAKIILRHLIEIPVRYQEEFEARGLEDCRLDHALYALPGPTIVDLRKTRAAQSPPVDSAA 60
           MAKIILRHLIEIPVRYQEEFEARGLEDCRLDHALYALPGPTIVDLRKTRAAQSPPVDSAA
Sbjct: 1   MAKIILRHLIEIPVRYQEEFEARGLEDCRLDHALYALPGPTIVDLRKTRAAQSPPVDSAA 60

Query: 61  ETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKL 120
           ETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKL
Sbjct: 61  ETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKL 120

Query: 121 PDGVEIKDLSAVLCHDGILVVEVKDPVGTK 150
           PDGVEIKDLSAVLCHDGILVVEVKDPVGTK
Sbjct: 121 PDGVEIKDLSAVLCHDGILVVEVKDPVGTK 150


>gi|4504519 heat shock 27kDa protein 2 [Homo sapiens]
          Length = 182

 Score = 71.6 bits (174), Expect = 2e-13
 Identities = 37/96 (38%), Positives = 54/96 (56%)

Query: 47  KTRAAQSPPVDSAAETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDE 106
           + RAA +     A  +  R  +  FQ  LDV  F P+++ ++T +  L + A+H  R+D 
Sbjct: 50  RPRAAPAGEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDR 109

Query: 107 HGFISRSFTRQYKLPDGVEIKDLSAVLCHDGILVVE 142
           HGF+SR F R Y LP  V+   + A L HDGIL +E
Sbjct: 110 HGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLE 145


>gi|4504517 heat shock protein beta-1 [Homo sapiens]
          Length = 205

 Score = 68.6 bits (166), Expect = 2e-12
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 2/111 (1%)

Query: 36  ALPGPTIVDLRKTRAAQSPPVDSAAETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLL 95
           A+  P +     +RA         +E   R     +++ LDV  F P+++ ++T +G + 
Sbjct: 62  AIESPAVAAPAYSRALSRQLSSGVSEI--RHTADRWRVSLDVNHFAPDELTVKTKDGVVE 119

Query: 96  IKAQHGTRMDEHGFISRSFTRQYKLPDGVEIKDLSAVLCHDGILVVEVKDP 146
           I  +H  R DEHG+ISR FTR+Y LP GV+   +S+ L  +G L VE   P
Sbjct: 120 ITGKHEERQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP 170


>gi|21389433 heat shock protein, alpha-crystallin-related, B6 [Homo
           sapiens]
          Length = 160

 Score = 67.4 bits (163), Expect = 4e-12
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 60  AETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYK 119
           A+ P   G  HF +LLDV  F PE+I ++     + + A+H  R DEHGF++R F R+Y+
Sbjct: 65  AQVPTDPG--HFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYR 122

Query: 120 LPDGVEIKDLSAVLCHDGILVVE 142
           LP GV+   +++ L  +G+L ++
Sbjct: 123 LPPGVDPAAVTSALSPEGVLSIQ 145


>gi|4503055 crystallin, alpha A [Homo sapiens]
          Length = 173

 Score = 65.5 bits (158), Expect = 2e-11
 Identities = 31/75 (41%), Positives = 45/75 (60%)

Query: 65  REGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGV 124
           R  +  F I LDV  F PED+ ++  + ++ I  +H  R D+HG+ISR F R+Y+LP  V
Sbjct: 65  RSDRDKFVIFLDVKHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFHRRYRLPSNV 124

Query: 125 EIKDLSAVLCHDGIL 139
           +   LS  L  DG+L
Sbjct: 125 DQSALSCSLSADGML 139


>gi|4503057 crystallin, alpha B [Homo sapiens]
          Length = 175

 Score = 60.8 bits (146), Expect = 4e-10
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 68  KSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGVEIK 127
           K  F + LDV  F PE++ ++     + +  +H  R DEHGFISR F R+Y++P  V+  
Sbjct: 72  KDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPL 131

Query: 128 DLSAVLCHDGILVV 141
            +++ L  DG+L V
Sbjct: 132 TITSSLSSDGVLTV 145


>gi|7657146 heat shock 22kDa protein 8 [Homo sapiens]
          Length = 196

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 24/87 (27%), Positives = 53/87 (60%)

Query: 56  VDSAAETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFT 115
           V +   TPP      +++ ++V  F PE+++++T +G++ +  +H  +  E G +S++FT
Sbjct: 81  VPAEGRTPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVEVSGKHEEKQQEGGIVSKNFT 140

Query: 116 RQYKLPDGVEIKDLSAVLCHDGILVVE 142
           ++ +LP  V+   + A L  +G+L++E
Sbjct: 141 KKIQLPAEVDPVTVFASLSPEGLLIIE 167


>gi|7657202 cardiovascular heat shock protein [Homo sapiens]
          Length = 170

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 71  FQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGVEIKDLS 130
           ++  +DV  F PEDII+ T    + ++A+   ++   G +  +F  + +LP+ V+   ++
Sbjct: 82  YEFAVDVRDFSPEDIIVTTSNNHIEVRAE---KLAADGTVMNTFAHKCQLPEDVDPTSVT 138

Query: 131 AVLCHDGILVVEVK 144
           + L  DG L +  +
Sbjct: 139 SALREDGSLTIRAR 152


>gi|15082238 heat shock protein, alpha-crystallin-related, B9
          [Homo sapiens]
          Length = 159

 Score = 30.8 bits (68), Expect = 0.45
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 59 AAETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQ 99
          AA+      +  FQ+ LD   F PE++++Q    WL++  Q
Sbjct: 42 AAQEDNDHARDGFQMKLDAHGFAPEELVVQVDGQWLMVTGQ 82


>gi|4826870 nucleobindin 2 [Homo sapiens]
          Length = 420

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 33 ALYALPGPTIVDLRKTRAAQSPPVDSAAETPPREGKSHFQILLDVVQFLPED 84
          AL A+P    +D+ KT+     PV+SA   PP  G  + + L  V+  L  D
Sbjct: 21 ALEAVP----IDIDKTKVQNIHPVESAKIEPPDTGLYYDEYLKQVIDVLETD 68


>gi|31543667 suppressor of var1, 3-like 1 [Homo sapiens]
          Length = 786

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 37  LPGPTIVDLRKTRAAQSPPVDSAAETPPREGKSHFQILLDVVQ--FLPEDIIIQTFEGWL 94
           L G      R+TR  ++  + S A  PP        +   +VQ   L  D++ Q  + W+
Sbjct: 699 LSGTLKSQARRTRGTKA--LGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWM 756

Query: 95  LIKAQHGTRMDEHGFISRSFTRQYKLPD 122
             + +H     E G   +   R+ K PD
Sbjct: 757 TQQTEHNKEKTESGTHPKGTRRKKKEPD 784


>gi|66730421 ATPase type 13A5 [Homo sapiens]
          Length = 1218

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%)

Query: 78   VQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYK 119
            V F  ED I+Q  E WLLIK        E GF S+S  R ++
Sbjct: 1127 VAFFVEDSILQNHELWLLIKR-------EFGFYSKSQYRTWQ 1161


>gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]
          Length = 880

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 35  YALPGPTIVDLRKT------RAAQSPPVDSAAETPPREGKSHFQILLDVVQFL 81
           + +  PT+V L +       R    PP D +   PPR    HF+ L  +VQ L
Sbjct: 161 FGVAAPTLVQLEEEIEEEVRRELALPPPDPSPPAPPRRQPCHFRNLDQMVQSL 213


>gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens]
          Length = 647

 Score = 27.7 bits (60), Expect = 3.8
 Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 24/140 (17%)

Query: 9   LIEIPVRYQEEFEARGLEDCRLDHALYALPGPTIVDLRKTRAAQSPPVDSAAETPPREGK 68
           +I I V   E+ EA   ++  LD +  A P P         A  SPP  SA + P     
Sbjct: 162 IICITVGKPEDIEA--FKNYTLDSS--AAPTPQAAPAPTPAATASPPTPSA-QAPGSSYP 216

Query: 69  SHFQILL---------DVVQFLPEDIIIQTFEGWLLI-----KAQHGTRMDEHGFISRSF 114
            H Q+LL           VQ   + +  +  EG LL      KA  G  + E G++++  
Sbjct: 217 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 276

Query: 115 TRQYKLPDGVEIKDLSAVLC 134
                +P+G     L   LC
Sbjct: 277 -----VPEGTRDVPLGTPLC 291


>gi|8922976 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 [Homo sapiens]
          Length = 540

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 9   LIEIPVRYQEEFEARGLEDCRLDHALYALPGPTIVDLRKTRAAQ----------SPPVDS 58
           ++ IPV  Q + E R      L   +   PGP +V  R+    Q            P+ S
Sbjct: 35  VVRIPVALQRQLEQRQSRRRNLPRPVLVRPGPLLVSARRPELNQPARLTLGRWERAPLAS 94

Query: 59  AAETPPREGKSHFQI 73
                 R  + HF I
Sbjct: 95  QGWKSRRARRDHFSI 109


>gi|26986534 Rho GTPase activating protein 12 [Homo sapiens]
          Length = 846

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 38  PGPTIVDLRKTRAAQSPPVDSAAETPPR 65
           PGP  +D+ KT  +Q    DSA E   R
Sbjct: 181 PGPEFLDVEKTSFSQEQSCDSAGEGSER 208


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.141    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,131,938
Number of Sequences: 37866
Number of extensions: 259262
Number of successful extensions: 647
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 16
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.