Search of human proteins with 5453617

Search of human proteins with 5453617

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5453617 zinc finger, HIT domain containing 1 [Homo sapiens]
         (154 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5453617 zinc finger, HIT domain containing 1 [Homo sapiens]        327   2e-90
gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens]         35   0.019
gi|7662074 zinc finger and BTB domain containing 5 [Homo sapiens]      34   0.043
gi|152963637 zinc finger protein 787 [Homo sapiens]                    31   0.37 
gi|169164753 PREDICTED: hypothetical protein LOC339742 [Homo sap...    31   0.48 
gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens]       31   0.48 
gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo ...    30   0.63 
gi|116268103 zinc finger, FYVE domain containing 19 [Homo sapiens]     30   0.63 
gi|148596977 zinc finger protein 31 [Homo sapiens]                     30   0.82 
gi|188035877 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sap...    30   1.1  
gi|153791350 replication initiator 1 isoform 1 [Homo sapiens]          30   1.1  
gi|153792539 replication initiator 1 isoform 1 [Homo sapiens]          30   1.1  
gi|153792647 replication initiator 1 isoform 3 [Homo sapiens]          30   1.1  
gi|153791994 replication initiator 1 isoform 1 [Homo sapiens]          30   1.1  
gi|221136788 zinc finger protein 772 isoform 2 [Homo sapiens]          29   1.4  
gi|66841380 zinc finger protein 772 isoform 1 [Homo sapiens]           29   1.4  
gi|46409310 zinc finger protein 467 [Homo sapiens]                     29   1.4  
gi|218505831 TRAF4 associated factor 1 isoform b [Homo sapiens]        29   1.8  
gi|218505827 TRAF4 associated factor 1 isoform a [Homo sapiens]        29   1.8  
gi|224549005 RNA binding motif protein 17 [Homo sapiens]               28   2.4  
gi|14249678 RNA binding motif protein 17 [Homo sapiens]                28   2.4  
gi|21040324 B-cell lymphoma 6 protein isoform 1 [Homo sapiens]         28   2.4  
gi|197927147 B-cell lymphoma 6 protein isoform 2 [Homo sapiens]        28   2.4  
gi|195927002 B-cell lymphoma 6 protein isoform 1 [Homo sapiens]        28   2.4  
gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens]       28   2.4  
gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens]       28   2.4  
gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens]       28   2.4  
gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein...    28   2.4  
gi|146198876 zinc finger protein 749 [Homo sapiens]                    28   2.4  
gi|40807457 zinc finger protein 334 isoform a [Homo sapiens]           28   2.4  

>gi|5453617 zinc finger, HIT domain containing 1 [Homo sapiens]
          Length = 154

 Score =  327 bits (839), Expect = 2e-90
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MVEKKTSVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDD 60
           MVEKKTSVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDD
Sbjct: 1   MVEKKTSVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDD 60

Query: 61  DADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVAEGPNYLTACAGPPSRPQRPFCAVC 120
           DADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVAEGPNYLTACAGPPSRPQRPFCAVC
Sbjct: 61  DADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVAEGPNYLTACAGPPSRPQRPFCAVC 120

Query: 121 GFPSPYTCVSCGARYCTVRCLGTHQETRCLKWTV 154
           GFPSPYTCVSCGARYCTVRCLGTHQETRCLKWTV
Sbjct: 121 GFPSPYTCVSCGARYCTVRCLGTHQETRCLKWTV 154


>gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens]
          Length = 403

 Score = 35.4 bits (80), Expect = 0.019
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 7/32 (21%)

Query: 120 CGF-------PSPYTCVSCGARYCTVRCLGTH 144
           CGF       P+ YTC  C A YC++RC  TH
Sbjct: 7   CGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 38


>gi|7662074 zinc finger and BTB domain containing 5 [Homo sapiens]
          Length = 677

 Score = 34.3 bits (77), Expect = 0.043
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 125 PYTCVSCGARYCTVRCLGTHQETRCLKW 152
           PY C+ CG R+     L  H +T CL+W
Sbjct: 640 PYACLKCGKRFSQSSHLYKHSKTTCLRW 667


>gi|152963637 zinc finger protein 787 [Homo sapiens]
          Length = 382

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 8/42 (19%)

Query: 106 AGPPSRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQET 147
           AGPP RP RP       P+PY C  CG  +     L  HQ T
Sbjct: 54  AGPPPRP-RP-------PAPYICNECGKSFSHWSKLTRHQRT 87



 Score = 26.6 bits (57), Expect = 9.1
 Identities = 15/52 (28%), Positives = 20/52 (38%)

Query: 97  EGPNYLTACAGPPSRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETR 148
           EG     A AG  ++   P       P PY C+ CG  +     L  HQ  +
Sbjct: 251 EGAAAAAAMAGAGAKAAGPRSRRAPAPKPYVCLECGKGFGHGAGLLAHQRAQ 302


>gi|169164753 PREDICTED: hypothetical protein LOC339742 [Homo
           sapiens]
          Length = 351

 Score = 30.8 bits (68), Expect = 0.48
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 118 AVCGFPSPYTCVSCGARYCTVRCLGTHQETR 148
           AV   P P+TC +CG  + +V C  + +E R
Sbjct: 306 AVHVLPQPFTCNNCGVAFPSVACRSSREELR 336


>gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens]
          Length = 155

 Score = 30.8 bits (68), Expect = 0.48
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 117 CAVCGFPSPYTCVSCGARYCTVRCLGTHQE 146
           C +C     Y C +C   YC+V C   H+E
Sbjct: 11  CVICLEKPKYRCPACRVPYCSVVCFRKHKE 40


>gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo
           sapiens]
          Length = 284

 Score = 30.4 bits (67), Expect = 0.63
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 98  GPNYLTACAGPPSRPQRPFCAVCGFPSP 125
           G +     A PP RP RP CA  G P+P
Sbjct: 136 GVSLAVGAAPPPPRPNRPRCAARGRPTP 163


>gi|116268103 zinc finger, FYVE domain containing 19 [Homo sapiens]
          Length = 471

 Score = 30.4 bits (67), Expect = 0.63
 Identities = 37/160 (23%), Positives = 51/160 (31%), Gaps = 44/160 (27%)

Query: 1   MVEKKTSVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDD 60
           + E    +R ++  Q R+L  A R   +  Q           DP     Q   RLP  DD
Sbjct: 309 LAEAALELREENTRQERILALAKRLAMLRGQ-----------DPERVTLQ-DYRLPDSDD 356

Query: 61  DADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVAEGPNYLTACAGPP----------- 109
           D D             +   ++  Q L EE +L  A G N     A  P           
Sbjct: 357 DEDE------------ETAIQRVLQQLTEEASLDEASGFNIPAEQASRPWTQPRGAEPEA 404

Query: 110 ----SRPQR-----PFCAVCGFPSPYTCVSCGARYCTVRC 140
                RP+      P+C +C   +   C  C       RC
Sbjct: 405 QDVDPRPEAEEEELPWCCICNEDATLRCAGCDGDLFCARC 444


>gi|148596977 zinc finger protein 31 [Homo sapiens]
          Length = 1043

 Score = 30.0 bits (66), Expect = 0.82
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 82  KNFQALLEEQNLSVAEGPNYLTACAGPPSRPQRPFCA---VCGFPSPYTCVSCGARYCTV 138
           ++ + L++ Q L +AE P     C    SR    F A   +     PY C+ CG  +   
Sbjct: 692 EDLEKLIDHQGLYLAEKPYKCDTCMKSFSRSSH-FIAHQRIHTGEKPYKCLECGKNFSDR 750

Query: 139 RCLGTHQ 145
             L THQ
Sbjct: 751 SNLNTHQ 757


>gi|188035877 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo
           sapiens]
          Length = 619

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 110 SRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTH 144
           + P  P C VCG    Y C       C++ C   H
Sbjct: 101 AEPGEPICVVCGRYGEYICDKTDEDVCSLECKAKH 135


>gi|153791350 replication initiator 1 isoform 1 [Homo sapiens]
          Length = 567

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 108 PPSRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQ 145
           PP  PQ P  A    PS Y+C  CG  +   R L  HQ
Sbjct: 360 PPEHPQDPIEAP---PSLYSCDDCGRSFRLERFLRAHQ 394


>gi|153792539 replication initiator 1 isoform 1 [Homo sapiens]
          Length = 567

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 108 PPSRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQ 145
           PP  PQ P  A    PS Y+C  CG  +   R L  HQ
Sbjct: 360 PPEHPQDPIEAP---PSLYSCDDCGRSFRLERFLRAHQ 394


>gi|153792647 replication initiator 1 isoform 3 [Homo sapiens]
          Length = 624

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 108 PPSRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQ 145
           PP  PQ P  A    PS Y+C  CG  +   R L  HQ
Sbjct: 417 PPEHPQDPIEAP---PSLYSCDDCGRSFRLERFLRAHQ 451


>gi|153791994 replication initiator 1 isoform 1 [Homo sapiens]
          Length = 567

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 108 PPSRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQ 145
           PP  PQ P  A    PS Y+C  CG  +   R L  HQ
Sbjct: 360 PPEHPQDPIEAP---PSLYSCDDCGRSFRLERFLRAHQ 394


>gi|221136788 zinc finger protein 772 isoform 2 [Homo sapiens]
          Length = 448

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 19/74 (25%)

Query: 90  EQNLSVAEGPNYLTACAGPPSRPQRPFCAVCGF-----------------PSPYTCVSCG 132
           EQ+ S+  G + +    G PS  +   C  CG                    PY CV CG
Sbjct: 80  EQSFSI--GMSQIRIPKGGPSTQKAYPCGTCGLVLKDILHLAEHQETHPGQKPYMCVLCG 137

Query: 133 ARYCTVRCLGTHQE 146
            ++C    L  HQ+
Sbjct: 138 KQFCFSANLHQHQK 151


>gi|66841380 zinc finger protein 772 isoform 1 [Homo sapiens]
          Length = 489

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 19/74 (25%)

Query: 90  EQNLSVAEGPNYLTACAGPPSRPQRPFCAVCGF-----------------PSPYTCVSCG 132
           EQ+ S+  G + +    G PS  +   C  CG                    PY CV CG
Sbjct: 121 EQSFSI--GMSQIRIPKGGPSTQKAYPCGTCGLVLKDILHLAEHQETHPGQKPYMCVLCG 178

Query: 133 ARYCTVRCLGTHQE 146
            ++C    L  HQ+
Sbjct: 179 KQFCFSANLHQHQK 192


>gi|46409310 zinc finger protein 467 [Homo sapiens]
          Length = 595

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 125 PYTCVSCGARYCTVRCLGTHQET 147
           PY C  CG R+     LG+HQ+T
Sbjct: 243 PYPCAECGKRFSQKIHLGSHQKT 265



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 85  QALLEEQNLSVAEGPNYLT--ACAGPPSRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLG 142
           Q L+  Q +    GP   +  + A P S    P  +  G P P+ C  CG  +   + L 
Sbjct: 313 QHLVRHQRVHQTAGPARPSPDSSASPHSTAPSPTPSFPG-PKPFACSDCGLSFGWKKNLA 371

Query: 143 THQ 145
           THQ
Sbjct: 372 THQ 374


>gi|218505831 TRAF4 associated factor 1 isoform b [Homo sapiens]
          Length = 286

 Score = 28.9 bits (63), Expect = 1.8
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 2   VEKKTSVRSQDPGQRRVLDRAARQ--RRINRQLEALENDNFQDDPHAGLPQLGKRLPQFD 59
           V K T +R ++ GQ +  D A R+  R+  + L   +++    D +  L  + K+L Q  
Sbjct: 135 VTKITKLRREN-GQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQLLEAVNKQLHQKL 193

Query: 60  DDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVAEGPNYLTA 104
            +   G+ K  T+      +FR N  A+LE + L  A G   L +
Sbjct: 194 TETQ-GELKDLTQKVELLEKFRDNCLAILESKGLDPALGSETLAS 237


>gi|218505827 TRAF4 associated factor 1 isoform a [Homo sapiens]
          Length = 316

 Score = 28.9 bits (63), Expect = 1.8
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 2   VEKKTSVRSQDPGQRRVLDRAARQ--RRINRQLEALENDNFQDDPHAGLPQLGKRLPQFD 59
           V K T +R ++ GQ +  D A R+  R+  + L   +++    D +  L  + K+L Q  
Sbjct: 135 VTKITKLRREN-GQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQLLEAVNKQLHQKL 193

Query: 60  DDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVAEGPNYLTA 104
            +   G+ K  T+      +FR N  A+LE + L  A G   L +
Sbjct: 194 TETQ-GELKDLTQKVELLEKFRDNCLAILESKGLDPALGSETLAS 237


>gi|224549005 RNA binding motif protein 17 [Homo sapiens]
          Length = 401

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 16  RRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDADTGKKKKK 70
           +R  +   RQR + RQ E  E +  + D H       +  P  D+D D  ++++K
Sbjct: 113 KRQREERQRQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRK 167


>gi|14249678 RNA binding motif protein 17 [Homo sapiens]
          Length = 401

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 16  RRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDADTGKKKKK 70
           +R  +   RQR + RQ E  E +  + D H       +  P  D+D D  ++++K
Sbjct: 113 KRQREERQRQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRK 167


>gi|21040324 B-cell lymphoma 6 protein isoform 1 [Homo sapiens]
          Length = 706

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 13/98 (13%)

Query: 57  QFDDDADTGKKKKKTRGD--------HFKLRFRKNFQALLEEQNLSVAEGPNYLTACAGP 108
           +F ++A   +   +T  D            R++ N   L   + +   E P     C   
Sbjct: 526 RFSEEASLKRHTLQTHSDKPYKCDRCQASFRYKGN---LASHKTVHTGEKPYRCNICGAQ 582

Query: 109 PSRPQ--RPFCAVCGFPSPYTCVSCGARYCTVRCLGTH 144
            +RP   +    +     PY C +CGAR+  V  L  H
Sbjct: 583 FNRPANLKTHTRIHSGEKPYKCETCGARFVQVAHLRAH 620


>gi|197927147 B-cell lymphoma 6 protein isoform 2 [Homo sapiens]
          Length = 650

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 89  EEQNLSVAEGPNYLTACAGPPSRPQ--RPFCAVCGFPSPYTCVSCGARYCTVRCLGTH 144
           E  + S  E P     C    +RP   +    +     PY C +CGAR+  V  L  H
Sbjct: 507 EYSDSSCGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPYKCETCGARFVQVAHLRAH 564


>gi|195927002 B-cell lymphoma 6 protein isoform 1 [Homo sapiens]
          Length = 706

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 13/98 (13%)

Query: 57  QFDDDADTGKKKKKTRGD--------HFKLRFRKNFQALLEEQNLSVAEGPNYLTACAGP 108
           +F ++A   +   +T  D            R++ N   L   + +   E P     C   
Sbjct: 526 RFSEEASLKRHTLQTHSDKPYKCDRCQASFRYKGN---LASHKTVHTGEKPYRCNICGAQ 582

Query: 109 PSRPQ--RPFCAVCGFPSPYTCVSCGARYCTVRCLGTH 144
            +RP   +    +     PY C +CGAR+  V  L  H
Sbjct: 583 FNRPANLKTHTRIHSGEKPYKCETCGARFVQVAHLRAH 620


>gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens]
          Length = 689

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 87  LLEEQNLSVAEGPNYLTACAGPPSRPQRPFCAVC 120
           +L E    +AEG +  T  A PP +P +P C+ C
Sbjct: 119 ILLEAPTGLAEGSSLHTPLALPPPQPPQPSCSPC 152


>gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens]
          Length = 549

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 87  LLEEQNLSVAEGPNYLTACAGPPSRPQRPFCAVC 120
           +L E    +AEG +  T  A PP +P +P C+ C
Sbjct: 119 ILLEAPTGLAEGSSLHTPLALPPPQPPQPSCSPC 152


>gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens]
          Length = 713

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 87  LLEEQNLSVAEGPNYLTACAGPPSRPQRPFCAVC 120
           +L E    +AEG +  T  A PP +P +P C+ C
Sbjct: 119 ILLEAPTGLAEGSSLHTPLALPPPQPPQPSCSPC 152


>gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein)
           [Homo sapiens]
          Length = 480

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 87  LLEEQNLSVAEGPNYLTACAGPPSRPQ--RPFCAVCGFPSPYTCVSCGARYCTVRCLGTH 144
           L   + +   E P + + C    +RP   +    +     PY C +CG+R+  V  L  H
Sbjct: 344 LASHRTVHTGEKPYHCSICGARFNRPANLKTHSRIHSGEKPYKCETCGSRFVQVAHLRAH 403


>gi|146198876 zinc finger protein 749 [Homo sapiens]
          Length = 778

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 123 PSPYTCVSCGARYCTVRCLGTHQET 147
           P+PY C  CG  + T   L  HQ+T
Sbjct: 295 PTPYECTQCGKAFLTQAHLVGHQKT 319



 Score = 27.3 bits (59), Expect = 5.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 123 PSPYTCVSCGARYCTVRCLGTHQE 146
           P PYTC  CG  + T   L  HQ+
Sbjct: 480 PRPYTCSECGKAFLTQAHLVGHQK 503


>gi|40807457 zinc finger protein 334 isoform a [Homo sapiens]
          Length = 680

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)

Query: 125 PYTCVSCGARYCTVRCLGTHQET 147
           PY C  CG  YC    L  HQ T
Sbjct: 543 PYECNECGRTYCRKSALTHHQRT 565


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,256,705
Number of Sequences: 37866
Number of extensions: 359372
Number of successful extensions: 4135
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 3664
Number of HSP's gapped (non-prelim): 512
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.