Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 5453613
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453613 CD7 antigen precursor [Homo sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453613 CD7 antigen precursor [Homo sapiens] 486 e-138
gi|62865876 immunoglobulin superfamily, member 11 isoform b [Hom... 54 9e-08
gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo... 53 3e-07
gi|62865874 immunoglobulin superfamily, member 11 isoform a [Hom... 51 1e-06
gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens] 50 2e-06
gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens] 50 2e-06
gi|169194776 PREDICTED: similar to hCG1742442 [Homo sapiens] 50 2e-06
gi|169190399 PREDICTED: similar to hCG1742442 [Homo sapiens] 50 2e-06
gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ... 50 2e-06
gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo ... 50 2e-06
gi|169163724 PREDICTED: similar to hCG26659 [Homo sapiens] 49 3e-06
gi|239747852 PREDICTED: hypothetical protein XP_002346449 [Homo ... 49 3e-06
gi|169163023 PREDICTED: similar to hCG26659 [Homo sapiens] 49 3e-06
gi|169174843 PREDICTED: similar to hCG1742442 [Homo sapiens] 48 7e-06
gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens] 48 7e-06
gi|11386199 poliovirus receptor-related 3 [Homo sapiens] 48 7e-06
gi|13489095 sialoadhesin precursor [Homo sapiens] 47 1e-05
gi|30425382 signal-regulatory protein delta [Homo sapiens] 46 3e-05
gi|169217390 PREDICTED: similar to hCG1742442 [Homo sapiens] 46 3e-05
gi|169217347 PREDICTED: similar to hCG1742442 [Homo sapiens] 46 3e-05
gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens] 41 0.001
gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo ... 41 0.001
gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens] 40 0.001
gi|239757666 PREDICTED: similar to hCG2040021 [Homo sapiens] 40 0.002
gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens] 39 0.003
gi|239747814 PREDICTED: hypothetical protein XP_002348323 [Homo ... 39 0.003
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact... 38 0.009
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 38 0.009
gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens] 38 0.009
gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens] 38 0.009
>gi|5453613 CD7 antigen precursor [Homo sapiens]
Length = 240
Score = 486 bits (1251), Expect = e-138
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MAGPPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYLR 60
MAGPPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYLR
Sbjct: 1 MAGPPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYLR 60
Query: 61 QLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQAITEV 120
QLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQAITEV
Sbjct: 61 QLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQAITEV 120
Query: 121 NVYGSGTLVLVTEEQSQGWHRCSDAPPRASALPAPPTGSALPDPQTASALPDPPAASALP 180
NVYGSGTLVLVTEEQSQGWHRCSDAPPRASALPAPPTGSALPDPQTASALPDPPAASALP
Sbjct: 121 NVYGSGTLVLVTEEQSQGWHRCSDAPPRASALPAPPTGSALPDPQTASALPDPPAASALP 180
Query: 181 AALAVISFLLGLGLGVACVLARTQIKKLCSWRDKNSAACVVYEDMSHSRCNTLSSPNQYQ 240
AALAVISFLLGLGLGVACVLARTQIKKLCSWRDKNSAACVVYEDMSHSRCNTLSSPNQYQ
Sbjct: 181 AALAVISFLLGLGLGVACVLARTQIKKLCSWRDKNSAACVVYEDMSHSRCNTLSSPNQYQ 240
>gi|62865876 immunoglobulin superfamily, member 11 isoform b [Homo
sapiens]
Length = 431
Score = 54.3 bits (129), Expect = 9e-08
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 11 PLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYLRQL-------- 62
PL L L G A+ EV +SP V G + C+ + I L +
Sbjct: 7 PLAPLLLLSLHGVAASLEVSESPGSIQVARGQPAVLPCTFTTSAALINLNVIWMVTPLSN 66
Query: 63 GPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQ--DNLTITMHRLQLSDTGTYTC 114
QP+ +I Y+ G + RF GR+ F+G+ N++I ++ QLSDTGTY C
Sbjct: 67 ANQPEQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQC 120
>gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo
sapiens]
Length = 123
Score = 52.8 bits (125), Expect = 3e-07
Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 1 MAGPPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGI--- 57
M P +LL L LL LPGA ++ QSP + VG V ITC S G+
Sbjct: 3 MRVPAQLLGLLLLW-----LPGARCDIQLTQSPSFLSASVGDRVTITCRASQGISSYLAW 57
Query: 58 YLRQLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQAI 117
Y ++ G P+ +IY + RF G SGS T+T+ LQ D TY CQ +
Sbjct: 58 YQQKPGKAPKLLIYAASTLQSGVPSRFSG----SGSGTEFTLTISSLQPEDFATYYCQQL 113
>gi|62865874 immunoglobulin superfamily, member 11 isoform a [Homo
sapiens]
Length = 430
Score = 50.8 bits (120), Expect = 1e-06
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 22 GALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYLRQL--------GPQPQDIIYYE 73
G A+ EV +SP V G + C+ + I L + QP+ +I Y+
Sbjct: 17 GVAASLEVSESPGSIQVARGQPAVLPCTFTTSAALINLNVIWMVTPLSNANQPEQVILYQ 76
Query: 74 DGVVPTTDRRFRGRIDFSGSQ--DNLTITMHRLQLSDTGTYTC 114
G + RF GR+ F+G+ N++I ++ QLSDTGTY C
Sbjct: 77 GGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQC 119
>gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens]
Length = 142
Score = 50.1 bits (118), Expect = 2e-06
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 1 MAGPPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGI--- 57
M P +LL L LL LPG ++ QSP + VG V ITC S G+
Sbjct: 12 MRVPAQLLGLLLLW-----LPGTRCDIQMTQSPSSLSASVGDRVTITCRASQGISNSLAW 66
Query: 58 YLRQLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
Y ++ G P+ ++Y + RF G SGS + T+T+ LQ D TY CQ
Sbjct: 67 YQQKPGKAPKLLLYAASRLESGVPSRFSG----SGSGTDYTLTISSLQPEDFATYYCQ 120
>gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 296
Score = 49.7 bits (117), Expect = 2e-06
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 12 LLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLR---GIYLRQLGPQPQD 68
LL L LPGA ++ QSP + VG V ITC S G+ Y ++ G P+
Sbjct: 180 LLGLLVLWLPGARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNWYQQKPGKTPKL 239
Query: 69 IIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
+IY + RF SGS + T+T+ LQ D TY CQ
Sbjct: 240 LIYAASSLQSGIPSRFSD----SGSGTDYTLTISSLQPEDFATYYCQ 282
>gi|169194776 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 242
Score = 49.7 bits (117), Expect = 2e-06
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 12 LLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLR---GIYLRQLGPQPQD 68
LL L LPGA ++ QSP + VG V ITC S G+ Y ++ G P+
Sbjct: 126 LLGLLVLWLPGARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNWYQQKPGKTPKL 185
Query: 69 IIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
+IY + RF SGS + T+T+ LQ D TY CQ
Sbjct: 186 LIYAASSLQSGIPSRFSD----SGSGTDYTLTISSLQPEDFATYYCQ 228
>gi|169190399 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 242
Score = 49.7 bits (117), Expect = 2e-06
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 12 LLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLR---GIYLRQLGPQPQD 68
LL L LPGA ++ QSP + VG V ITC S G+ Y ++ G P+
Sbjct: 126 LLGLLVLWLPGARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNWYQQKPGKTPKL 185
Query: 69 IIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
+IY + RF SGS + T+T+ LQ D TY CQ
Sbjct: 186 LIYAASSLQSGIPSRFSD----SGSGTDYTLTISSLQPEDFATYYCQ 228
>gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo
sapiens]
Length = 761
Score = 49.7 bits (117), Expect = 2e-06
Identities = 38/110 (34%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 9 LLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLR---GIYLRQLGPQ 65
LL LL L LPGA ++ QSP + VG V ITC S G+ Y ++
Sbjct: 642 LLGLLGLLGLWLPGARCDIQMTQSPSSLSASVGGRVTITCRASQGISNNLNWYQQKPRKT 701
Query: 66 PQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
P+ +IY + RF SGS + T+T+ LQ D TY CQ
Sbjct: 702 PKLLIYAASSLQSGIPSRFSD----SGSGTDYTLTISSLQPEDFATYYCQ 747
>gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo
sapiens]
Length = 636
Score = 49.7 bits (117), Expect = 2e-06
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 12 LLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLR---GIYLRQLGPQPQD 68
LL L LPGA ++ QSP + VG V ITC S G+ Y ++ G P+
Sbjct: 520 LLGLLVLWLPGARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNWYQQKPGKTPKL 579
Query: 69 IIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
+IY + RF SGS + T+T+ LQ D TY CQ
Sbjct: 580 LIYAASSLQSGIPSRFSD----SGSGADYTLTIRSLQPEDFATYYCQ 622
>gi|169163724 PREDICTED: similar to hCG26659 [Homo sapiens]
Length = 191
Score = 49.3 bits (116), Expect = 3e-06
Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 9 LLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGL-RGI--YLRQLGPQ 65
LL LLL RG A +V QSP + VG V ITC S G+ G+ Y ++ G
Sbjct: 9 LLGLLLLWLRG---ARCDIQVTQSPSSLSASVGDRVTITCRASQGISNGLSWYQQKPGQA 65
Query: 66 PQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTC 114
P +IY + RF G SGS + T+T+ LQ D TY C
Sbjct: 66 PTLLIYAASSLQSGVPSRFSG----SGSGTDFTLTISSLQPEDVATYYC 110
>gi|239747852 PREDICTED: hypothetical protein XP_002346449 [Homo
sapiens]
Length = 155
Score = 49.3 bits (116), Expect = 3e-06
Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 9 LLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGL-RGI--YLRQLGPQ 65
LL LLL RG A +V QSP + VG V ITC S G+ G+ Y ++ G
Sbjct: 9 LLGLLLLWLRG---ARCDIQVTQSPSSLSASVGDRVTITCRASQGISNGLSWYQQKPGQA 65
Query: 66 PQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTC 114
P +IY + RF G SGS + T+T+ LQ D TY C
Sbjct: 66 PTLLIYAASSLQSGVPSRFSG----SGSGTDFTLTISSLQPEDVATYYC 110
>gi|169163023 PREDICTED: similar to hCG26659 [Homo sapiens]
Length = 191
Score = 49.3 bits (116), Expect = 3e-06
Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 9 LLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGL-RGI--YLRQLGPQ 65
LL LLL RG A +V QSP + VG V ITC S G+ G+ Y ++ G
Sbjct: 9 LLGLLLLWLRG---ARCDIQVTQSPSSLSASVGDRVTITCRASQGISNGLSWYQQKPGQA 65
Query: 66 PQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTC 114
P +IY + RF G SGS + T+T+ LQ D TY C
Sbjct: 66 PTLLIYAASSLQSGVPSRFSG----SGSGTDFTLTISSLQPEDVATYYC 110
>gi|169174843 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 276
Score = 48.1 bits (113), Expect = 7e-06
Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 9 LLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLR---GIYLRQLGPQ 65
LL LL L LPG ++ QSP + VG V ITC S G+ Y ++
Sbjct: 157 LLGLLGLLGLWLPGVRCDIQMTQSPSSLSASVGGRVTITCRASQGISNNLNWYQQKPRKT 216
Query: 66 PQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
P+ +IY + RF SGS + T+T+ LQ D TY CQ
Sbjct: 217 PKLLIYAASSLQSGIPSRFSD----SGSGTDYTLTISSLQPEDFATYYCQ 262
>gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 295
Score = 48.1 bits (113), Expect = 7e-06
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 12 LLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLR---GIYLRQLGPQPQD 68
LL L LPGA ++ QSP + VG V ITC S G+ Y ++ G P+
Sbjct: 179 LLGLLGLWLPGARCDIQMTQSPSSLSASVGGRVTITCRASQGISNNLNWYQQKPGKTPKL 238
Query: 69 IIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
+IY + RF SGS + T+T+ LQ D Y CQ
Sbjct: 239 LIYAASSLQSGIPSRFSD----SGSGADYTLTISSLQPEDFAAYYCQ 281
>gi|11386199 poliovirus receptor-related 3 [Homo sapiens]
Length = 549
Score = 48.1 bits (113), Expect = 7e-06
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 8/136 (5%)
Query: 4 PPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITC--STSGGLRGIYLRQ 61
PP LLLL L L L GALA + + PH T V G +V++ C + + I +
Sbjct: 36 PPPLLLLLFPLLLFSRLCGALAGPIIVE-PHVTAV-WGKNVSLKCLIEVNETITQISWEK 93
Query: 62 L-GPQPQDIIYYEDGVVPTTDRRFRGRIDFSG-SQDNLTITMHRLQLSDTGTYTCQAITE 119
+ G Q + + + ++GR+ F S ++ TIT+H + SD+G Y C+A+T
Sbjct: 94 IHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKYICKAVTF 153
Query: 120 V--NVYGSGTLVLVTE 133
N S T+ ++ E
Sbjct: 154 PLGNAQSSTTVTVLVE 169
>gi|13489095 sialoadhesin precursor [Homo sapiens]
Length = 1709
Score = 47.4 bits (111), Expect = 1e-05
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 5 PRLLLLPLLLALARGLPGALAAQEVQQ-SPHCTTVPVGASVNITCSTSGGLRGIYLRQLG 63
P+LLLL + G + Q+VQ C +P S G+ I+
Sbjct: 5 PKLLLLASFFPAGQASWGVSSPQDVQGVKGSCLLIPCIFSFPADVEVPDGITAIWYYDYS 64
Query: 64 PQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDN--LTITMHRLQLSDTGTYTCQ-AITEV 120
Q Q + + D + + RFRGR +F G+ ++ + + LQ D+G+Y + I+EV
Sbjct: 65 GQRQVVSHSADPKL--VEARFRGRTEFMGNPEHRVCNLLLKDLQPEDSGSYNFRFEISEV 122
Query: 121 NVYG--SGTLVLVTEE 134
N + GTLV VTEE
Sbjct: 123 NRWSDVKGTLVTVTEE 138
Score = 30.4 bits (67), Expect = 1.4
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 86 GRIDFSGSQDNLTITMHRLQLSDTGTYTCQAITEVNVYGSGTLVLVTEEQSQGWHRCSDA 145
GR ++L + + L L D+G+Y C+A NV GS L + + W + S +
Sbjct: 848 GRFQAKAEANSLKLEVRELGLGDSGSYRCEA---TNVLGSSNTSLFFQVRG-AWVQVSPS 903
Query: 146 P 146
P
Sbjct: 904 P 904
>gi|30425382 signal-regulatory protein delta [Homo sapiens]
Length = 197
Score = 46.2 bits (108), Expect = 3e-05
Identities = 58/186 (31%), Positives = 76/186 (40%), Gaps = 33/186 (17%)
Query: 2 AGPPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRG---IY 58
A P L LLL L L G VQQ+ TV G S+ ++CS L ++
Sbjct: 5 ASPLHPPLPSLLLYLLLELAGVTHVFHVQQTEMSQTVSTGESIILSCSVPDTLPNGPVLW 64
Query: 59 LRQLGPQPQDIIYYEDGVVPTT----DRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTC 114
+ GP + I ++ G P D G DFS + + L+D GTY C
Sbjct: 65 FKGTGPNRKLIYNFKQGNFPRVKEIGDTTKPGNTDFS-------TRIREISLADAGTYYC 117
Query: 115 ------QAITEVNVYGSGTLVLVTEEQSQGWHRCSDAPPRASALPAPPTGS-ALPDPQTA 167
+AI E G GT V VTE+ + PP+ PA GS A D T
Sbjct: 118 VKFIKGRAIKEYQ-SGRGTQVFVTEQNPR--------PPKNR--PAGRAGSRAHHDAHTC 166
Query: 168 -SALPD 172
SALP+
Sbjct: 167 LSALPE 172
>gi|169217390 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 205
Score = 45.8 bits (107), Expect = 3e-05
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 12 LLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGL---RGIYLRQLGPQPQD 68
LL L LPG ++ QSP + VG V ITC S G+ Y ++ G P+
Sbjct: 89 LLGLLVFWLPGVRCDIQMTQSPSSLSASVGDRVTITCRASQGIINNLNWYQKKPGKTPKL 148
Query: 69 IIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
+IY + RF SGS + T T+ LQ D TY CQ
Sbjct: 149 LIYAASSLQSGIPTRFSD----SGSGTDYTPTISSLQPEDFATYYCQ 191
>gi|169217347 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 205
Score = 45.8 bits (107), Expect = 3e-05
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 12 LLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGL---RGIYLRQLGPQPQD 68
LL L LPG ++ QSP + VG V ITC S G+ Y ++ G P+
Sbjct: 89 LLGLLVFWLPGVRCDIQMTQSPSSLSASVGDRVTITCRASQGIINNLNWYQKKPGKTPKL 148
Query: 69 IIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
+IY + RF SGS + T T+ LQ D TY CQ
Sbjct: 149 LIYAASSLQSGIPTRFSD----SGSGTDYTPTISSLQPEDFATYYCQ 191
>gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens]
Length = 152
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 1 MAGPPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYL- 59
M P +LL L LL LP + QSP ++ G ++C S + YL
Sbjct: 1 METPAQLLFLLLLW-----LPDTTGEIVLTQSPATLSLSPGERATLSCGASQSVSSSYLA 55
Query: 60 ---RQLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
++ G P+ +IY RF G SGS + T+T+ RL+ D Y CQ
Sbjct: 56 WYQQKPGLAPRLLIYDASSRATGIPDRFSG----SGSGTDFTLTISRLEPEDFAVYYCQ 110
>gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo
sapiens]
Length = 152
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 1 MAGPPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYL- 59
M P +LL L LL LP + QSP ++ G ++C S + YL
Sbjct: 1 METPAQLLFLLLLW-----LPDTTGEIVLTQSPATLSLSPGERATLSCGASQSVSSSYLA 55
Query: 60 ---RQLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
++ G P+ +IY RF G SGS + T+T+ RL+ D Y CQ
Sbjct: 56 WYQQKPGLAPRLLIYDASSRATGIPDRFSG----SGSGTDFTLTISRLEPEDFAVYYCQ 110
>gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 151
Score = 40.4 bits (93), Expect = 0.001
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 1 MAGPPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYL- 59
M P +LL L LL LP + QSP ++ G ++C S + YL
Sbjct: 1 MEAPAQLLFLLLLW-----LPDTTGEIVMTQSPATLSLSPGERATLSCRASQSVSSSYLS 55
Query: 60 ---RQLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
++ G P+ +IY RF G SGS + T+T+ LQ D Y CQ
Sbjct: 56 WYQQKPGQAPRLLIYGASTRATGIPARFSG----SGSGTDFTLTISSLQPEDFAVYYCQ 110
>gi|239757666 PREDICTED: similar to hCG2040021 [Homo sapiens]
Length = 137
Score = 39.7 bits (91), Expect = 0.002
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 12 LLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSG-GLRGIYLRQLGP-QPQDI 69
LLL L G++ + + Q P + P G + ITC + G + ++ Q P Q +
Sbjct: 6 LLLGLLSHCTGSVTSYVLTQPPSVSVAP-GKTARITCGGNNIGSKSVHWYQQKPGQAPVL 64
Query: 70 IYYEDGVVPT-TDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
+ Y+D P+ RF G S S + T+T+ R++ D Y CQ
Sbjct: 65 VVYDDSDRPSGIPERFSG----SNSGNTATLTISRVEAGDEADYYCQ 107
>gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 157
Score = 39.3 bits (90), Expect = 0.003
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 1 MAGPPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYL- 59
M P +LL L LL G + QSP ++ G ++C S + YL
Sbjct: 1 MEAPAQLLFLLLLWLPGEGNMRYHGEIVMTQSPATLSLSPGERATLSCRASQSVSSSYLS 60
Query: 60 ---RQLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
++ G P+ +IY RF G SGS + T+T+ LQ D Y CQ
Sbjct: 61 WYQQKPGQAPRLLIYGASTRATGIPARFSG----SGSGTDFTLTISSLQPEDFAVYYCQ 115
>gi|239747814 PREDICTED: hypothetical protein XP_002348323 [Homo
sapiens]
Length = 162
Score = 39.3 bits (90), Expect = 0.003
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 23 ALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGI---YLRQLGPQPQDIIYYEDGVVPT 79
A A ++ Q P + VG SV ITC S Y ++ G P+ +IY +
Sbjct: 70 ARCAIQMTQPPSSLSASVGDSVTITCRASQSFTNQLAWYQQKPGKAPKLLIYRVSSLQTG 129
Query: 80 TDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQ 115
F G S S + T+T+ LQ D TY CQ
Sbjct: 130 VPSLFSG----SESGTDFTLTISSLQPDDVATYYCQ 161
>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform a [Homo sapiens]
Length = 6620
Score = 37.7 bits (86), Expect = 0.009
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 13 LLALARGLPGALAAQEVQQSPHCT-----TVPVGASVNITCSTSGGLRGIYLRQLGPQPQ 67
LLA + A+ A+ SP T TV G ++C +G P+P+
Sbjct: 219 LLAHLQRRREAMRAEGAPASPPSTGTRTCTVTEGKHARLSCYVTGE----------PKPE 268
Query: 68 DIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQAITEVNVYGSGT 127
+ + +DG + T RR + + +Q+N + + + SD G YTC A V S
Sbjct: 269 TV-WKKDGQLVTEGRR---HVVYEDAQENFVLKILFCKQSDRGLYTCTASNLVGQTYSSV 324
Query: 128 LVLVTE 133
LV+V E
Sbjct: 325 LVVVRE 330
Score = 28.5 bits (62), Expect = 5.4
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 14/112 (12%)
Query: 38 VPVGASVNITCSTSGGLRGIYLR-QLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDN 96
+PV + + T L+ + L P P+ + +Y+D + +F+ + G
Sbjct: 2467 IPVVLTRPLEPKTGRELQSVVLSCDFRPAPKAVQWYKDDTPLSPSEKFK--MSLEGQMAE 2524
Query: 97 LTITMHRLQLSDTGTYTCQA-----ITEVNVYGSGTLVL----VTEEQSQGW 139
L I RL +D G Y CQA TEV V V E +GW
Sbjct: 2525 LRIL--RLMPADAGVYRCQAGSAHSSTEVTVEAREVTVTGPLQDAEATEEGW 2574
>gi|148833506 obscurin, cytoskeletal calmodulin and
titin-interacting RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 37.7 bits (86), Expect = 0.009
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 13 LLALARGLPGALAAQEVQQSPHCT-----TVPVGASVNITCSTSGGLRGIYLRQLGPQPQ 67
LLA + A+ A+ SP T TV G ++C +G P+P+
Sbjct: 219 LLAHLQRRREAMRAEGAPASPPSTGTRTCTVTEGKHARLSCYVTGE----------PKPE 268
Query: 68 DIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQAITEVNVYGSGT 127
+ + +DG + T RR + + +Q+N + + + SD G YTC A V S
Sbjct: 269 TV-WKKDGQLVTEGRR---HVVYEDAQENFVLKILFCKQSDRGLYTCTASNLVGQTYSSV 324
Query: 128 LVLVTE 133
LV+V E
Sbjct: 325 LVVVRE 330
Score = 28.5 bits (62), Expect = 5.4
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 14/112 (12%)
Query: 38 VPVGASVNITCSTSGGLRGIYLR-QLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDN 96
+PV + + T L+ + L P P+ + +Y+D + +F+ + G
Sbjct: 2467 IPVVLTRPLEPKTGRELQSVVLSCDFRPAPKAVQWYKDDTPLSPSEKFK--MSLEGQMAE 2524
Query: 97 LTITMHRLQLSDTGTYTCQA-----ITEVNVYGSGTLVL----VTEEQSQGW 139
L I RL +D G Y CQA TEV V V E +GW
Sbjct: 2525 LRIL--RLMPADAGVYRCQAGSAHSSTEVTVEAREVTVTGPLQDAEATEEGW 2574
>gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 37.7 bits (86), Expect = 0.009
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 63 GPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQD--NLTITMHRLQLSDTGTYTCQAITEV 120
GP+ Q + YY RF+ R+ + G+ + + +I + +LQ D GTYTCQ
Sbjct: 71 GPE-QFVFYYHIDPFQPMSGRFKDRVSWDGNPERYDASILLWKLQFDDNGTYTCQVKNPP 129
Query: 121 NVYG 124
+V G
Sbjct: 130 DVDG 133
>gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 37.7 bits (86), Expect = 0.009
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 63 GPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQD--NLTITMHRLQLSDTGTYTCQAITEV 120
GP+ Q + YY RF+ R+ + G+ + + +I + +LQ D GTYTCQ
Sbjct: 71 GPE-QFVFYYHIDPFQPMSGRFKDRVSWDGNPERYDASILLWKLQFDDNGTYTCQVKNPP 129
Query: 121 NVYG 124
+V G
Sbjct: 130 DVDG 133
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,843,309
Number of Sequences: 37866
Number of extensions: 552566
Number of successful extensions: 5983
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 227
Number of HSP's that attempted gapping in prelim test: 4855
Number of HSP's gapped (non-prelim): 1282
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.