Search of human proteins with 5453601

Search of human proteins with 5453601

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5453601 cartilage associated protein precursor [Homo
sapiens]
         (401 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5453601 cartilage associated protein precursor [Homo sapiens]      826   0.0  
gi|5454038 synaptonemal complex protein SC65 [Homo sapiens]           418   e-117
gi|239753578 PREDICTED: similar to cartilage associated protein ...   337   1e-92
gi|186928835 leprecan 1 isoform 1 [Homo sapiens]                      214   1e-55
gi|226371643 leprecan 1 isoform 2 [Homo sapiens]                      214   1e-55
gi|27764882 leprecan-like 1 isoform a [Homo sapiens]                  190   2e-48
gi|28466983 leprecan-like 2 [Homo sapiens]                            117   2e-26
gi|197313662 leprecan-like 1 isoform b [Homo sapiens]                 100   4e-21
gi|33589818 prolyl 4-hydroxylase, alpha III subunit precursor [H...    42   0.001
gi|108773804 Fraser syndrome 1 [Homo sapiens]                          32   0.78 
gi|221554526 coiled-coil domain containing 42B [Homo sapiens]          31   1.7  
gi|237649104 bromodomain containing 9 isoform 1 [Homo sapiens]         31   1.7  
gi|14670354 general transcription factor II, i isoform 3 [Homo s...    30   3.0  
gi|14670352 general transcription factor II, i isoform 2 [Homo s...    30   3.0  
gi|14670350 general transcription factor II, i isoform 1 [Homo s...    30   3.0  
gi|169881252 general transcription factor II, i isoform 4 [Homo ...    30   3.0  
gi|210147446 hypothetical protein LOC120406 [Homo sapiens]             30   3.0  
gi|19743905 RAR-related orphan receptor A isoform d [Homo sapiens]     29   6.6  
gi|4506577 RAR-related orphan receptor A isoform c [Homo sapiens]      29   6.6  
gi|19743901 RAR-related orphan receptor A isoform b [Homo sapiens]     29   6.6  
gi|19743903 RAR-related orphan receptor A isoform a [Homo sapiens]     29   6.6  

>gi|5453601 cartilage associated protein precursor [Homo sapiens]
          Length = 401

 Score =  826 bits (2133), Expect = 0.0
 Identities = 401/401 (100%), Positives = 401/401 (100%)

Query: 1   MEPGRRGAAALLALLCVACALRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHW 60
           MEPGRRGAAALLALLCVACALRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHW
Sbjct: 1   MEPGRRGAAALLALLCVACALRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHW 60

Query: 61  AESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPAAGLASYPELRLFGGLLRRAHCLK 120
           AESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPAAGLASYPELRLFGGLLRRAHCLK
Sbjct: 61  AESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPAAGLASYPELRLFGGLLRRAHCLK 120

Query: 121 RCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEM 180
           RCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEM
Sbjct: 121 RCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEM 180

Query: 181 MKRNMAYYKSLPGAEDYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKAF 240
           MKRNMAYYKSLPGAEDYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKAF
Sbjct: 181 MKRNMAYYKSLPGAEDYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKAF 240

Query: 241 YECLAACEGSREIKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHY 300
           YECLAACEGSREIKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHY
Sbjct: 241 YECLAACEGSREIKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHY 300

Query: 301 LQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQNLVYYQYHRDTWGLSDEHFQPRPEAVQ 360
           LQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQNLVYYQYHRDTWGLSDEHFQPRPEAVQ
Sbjct: 301 LQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQNLVYYQYHRDTWGLSDEHFQPRPEAVQ 360

Query: 361 FFNVTTLQKELYDFAKENIMDDDEGEVVEYVDDLLELEETS 401
           FFNVTTLQKELYDFAKENIMDDDEGEVVEYVDDLLELEETS
Sbjct: 361 FFNVTTLQKELYDFAKENIMDDDEGEVVEYVDDLLELEETS 401


>gi|5454038 synaptonemal complex protein SC65 [Homo sapiens]
          Length = 437

 Score =  418 bits (1074), Expect = e-117
 Identities = 208/375 (55%), Positives = 267/375 (71%), Gaps = 6/375 (1%)

Query: 21  LRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHWAESVGYLEISLRLHRLLRDS 80
           L +  AQYE+YSFR FP ++LMPL +AY HAL++Y GE W ES  YLE +LRLHRLLRDS
Sbjct: 13  LGSAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDS 72

Query: 81  EAFCHRNCSA---APQPEPAAGLASY--PELRLFGGLLRRAHCLKRCKQGLPAFRQSQPS 135
           EAFCH NCS    A +P+P  G A     ELRLFG +L RA CL+RCK+ LPAF+   P 
Sbjct: 73  EAFCHANCSGPAPAAKPDPDGGRADEWACELRLFGRVLERAACLRRCKRTLPAFQVPYPP 132

Query: 136 REVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKS-LPGA 194
           R++L DFQ R PY++L +A FKAN L KA+AAA+TFL ++P  E+  + + YY+  L  A
Sbjct: 133 RQLLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVA 192

Query: 195 EDYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIK 254
           ++ + DLE + YE++F+RAV+ YN  ++R+S  DME AL ++   F  CLA CEG+ E  
Sbjct: 193 DESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFARCLAGCEGAHEQV 252

Query: 255 DFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNA 314
           DFKDFY +IAD + E L+CK+ CE NLTP +GGY V+KFVATMYHYLQFAYYKLND++ A
Sbjct: 253 DFKDFYPAIADLFAESLQCKVDCEANLTPNVGGYFVDKFVATMYHYLQFAYYKLNDVRQA 312

Query: 315 APCAVSYLLFDQNDKVMQQNLVYYQYHRDTWGLSDEHFQPRPEAVQFFNVTTLQKELYDF 374
           A  A SY+LFD  D VMQQNLVYY++HR  WGL +E FQPR EA+ + N T   +EL +F
Sbjct: 313 ARSAASYMLFDPKDSVMQQNLVYYRFHRARWGLEEEDFQPREEAMLYHNQTAELRELLEF 372

Query: 375 AKENIMDDDEGEVVE 389
               +  DDE E+ E
Sbjct: 373 THMYLQSDDEMELEE 387


>gi|239753578 PREDICTED: similar to cartilage associated protein
           [Homo sapiens]
          Length = 241

 Score =  337 bits (863), Expect = 1e-92
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MEPGRRGAAALLALLCVACALRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHW 60
           MEPGRRGAAALLALLCVACALRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHW
Sbjct: 1   MEPGRRGAAALLALLCVACALRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHW 60

Query: 61  AESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPAAGLASYPELRLFGGLLRRAHCLK 120
           AESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPAAGLASYPELRLFGGLLRRAHCLK
Sbjct: 61  AESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPAAGLASYPELRLFGGLLRRAHCLK 120

Query: 121 RCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPK 163
           RCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPK
Sbjct: 121 RCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPK 163



 Score = 33.9 bits (76), Expect = 0.27
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 14/123 (11%)

Query: 202 ETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYL 261
           E    ES +  A+  Y+GE+W  S+  +E++L    +   +  A C  +       +   
Sbjct: 40  ELMPLESAYRHALDKYSGEHWAESVGYLEISL-RLHRLLRDSEAFCHRNCSAAPQPEPAA 98

Query: 262 SIADH--------YVEVLECKIQCEENLTPVIGGYPVEKFVATM-----YHYLQFAYYKL 308
            +A +         +    C  +C++ L       P  + +A       Y +LQFAY+K 
Sbjct: 99  GLASYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKA 158

Query: 309 NDL 311
           N+L
Sbjct: 159 NNL 161


>gi|186928835 leprecan 1 isoform 1 [Homo sapiens]
          Length = 736

 Score =  214 bits (545), Expect = 1e-55
 Identities = 141/391 (36%), Positives = 203/391 (51%), Gaps = 36/391 (9%)

Query: 6   RGAAALLALLCVACALRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHWAESVG 65
           R    L  LL V  A  A +A+ E  +       +L+     +      Y+   W   V 
Sbjct: 4   RALKLLTTLLAVVAA--ASQAEVESEAGWGMVTPDLL-----FAEGTAAYARGDWPGVVL 56

Query: 66  YLEISLRLHRLLRDSEAFCHRNCSA----------APQPEPAAGLASYPELRLFGGLLRR 115
            +E +LR    LR     C   C+A          +P P  A+G A+  +L  FGGLLRR
Sbjct: 57  SMERALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALRDLSFFGGLLRR 116

Query: 116 AHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKH 175
           A CL+RC  G PA      S E+  +F++R PY +LQ AYFK N L KA+AAAHTF + +
Sbjct: 117 AACLRRCL-GPPAAHSL--SEEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGN 173

Query: 176 PDDEMMKRNMAYYKSLPGAEDY-IKDLETKSYESLFIRAVRAYNGENWRTSITDMELALP 234
           P+   M++N+ YY+++ G ++   KDLET+ +   F   VR Y+ E  + ++  +E AL 
Sbjct: 174 PEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQ 233

Query: 235 DFFKAFYECLAACEGSREIKDFK------DFYLSIADHYVEVLECKIQCEENL-TPVIGG 287
           ++F A+ EC A CEG  +   +       D + +I DHY++VL CK  C   L +     
Sbjct: 234 EYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSRE 293

Query: 288 YPVEKFVATMYHYLQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQNLVYYQYHRDTWGL 347
            P E F+ + Y+YLQFAYY + +   A  CA +YLLF  ND+VM QNL YY        L
Sbjct: 294 KPFEDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAM-----L 348

Query: 348 SDEHFQ---PRPEAVQFFNVTTLQKELYDFA 375
            +EH +   PR  A ++   + L+KEL  FA
Sbjct: 349 GEEHTRSIGPRESAKEYRQRSLLEKELLFFA 379


>gi|226371643 leprecan 1 isoform 2 [Homo sapiens]
          Length = 697

 Score =  214 bits (545), Expect = 1e-55
 Identities = 141/391 (36%), Positives = 203/391 (51%), Gaps = 36/391 (9%)

Query: 6   RGAAALLALLCVACALRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHWAESVG 65
           R    L  LL V  A  A +A+ E  +       +L+     +      Y+   W   V 
Sbjct: 4   RALKLLTTLLAVVAA--ASQAEVESEAGWGMVTPDLL-----FAEGTAAYARGDWPGVVL 56

Query: 66  YLEISLRLHRLLRDSEAFCHRNCSA----------APQPEPAAGLASYPELRLFGGLLRR 115
            +E +LR    LR     C   C+A          +P P  A+G A+  +L  FGGLLRR
Sbjct: 57  SMERALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALRDLSFFGGLLRR 116

Query: 116 AHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKH 175
           A CL+RC  G PA      S E+  +F++R PY +LQ AYFK N L KA+AAAHTF + +
Sbjct: 117 AACLRRCL-GPPAAHSL--SEEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGN 173

Query: 176 PDDEMMKRNMAYYKSLPGAEDY-IKDLETKSYESLFIRAVRAYNGENWRTSITDMELALP 234
           P+   M++N+ YY+++ G ++   KDLET+ +   F   VR Y+ E  + ++  +E AL 
Sbjct: 174 PEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQ 233

Query: 235 DFFKAFYECLAACEGSREIKDFK------DFYLSIADHYVEVLECKIQCEENL-TPVIGG 287
           ++F A+ EC A CEG  +   +       D + +I DHY++VL CK  C   L +     
Sbjct: 234 EYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSRE 293

Query: 288 YPVEKFVATMYHYLQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQNLVYYQYHRDTWGL 347
            P E F+ + Y+YLQFAYY + +   A  CA +YLLF  ND+VM QNL YY        L
Sbjct: 294 KPFEDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAM-----L 348

Query: 348 SDEHFQ---PRPEAVQFFNVTTLQKELYDFA 375
            +EH +   PR  A ++   + L+KEL  FA
Sbjct: 349 GEEHTRSIGPRESAKEYRQRSLLEKELLFFA 379


>gi|27764882 leprecan-like 1 isoform a [Homo sapiens]
          Length = 708

 Score =  190 bits (483), Expect = 2e-48
 Identities = 120/351 (34%), Positives = 178/351 (50%), Gaps = 14/351 (3%)

Query: 41  LMPLESAYRHALDKYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAA-PQPEPAAG 99
           L P +  Y      Y    +  +V  LE +LR HR LR+    C R+C+A  P P P  G
Sbjct: 41  LQPFDLLYASGAAAYYSGDYERAVRDLEAALRSHRRLREIRTRCARHCAARHPLPPPPPG 100

Query: 100 LASYPELRLFGGLLRRAHCLKRCKQ---GLPAFRQSQPSREVLADFQRREPYKFLQFAYF 156
                EL LF  LL RA C + C+    G PA R  + S +V +DFQRR PY +LQ AY 
Sbjct: 101 EGPGAELPLFRSLLGRARCYRSCETQRLGGPASRH-RVSEDVRSDFQRRVPYNYLQRAYI 159

Query: 157 KANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPGAED-YIKDLETKSYESLFIRAVR 215
           K N L KA+ AAHTF + +P+   M++N+  Y++  G E   + D E K +   +   V+
Sbjct: 160 KLNQLEKAVEAAHTFFVANPEHMEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVK 219

Query: 216 AYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFK------DFYLSIADHYVE 269
            Y  +++  +I   E AL ++F    EC   CEG +  ++++        Y +IADHY++
Sbjct: 220 HYEADDFEMAIRHFEQALREYFVEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQ 279

Query: 270 VLECKIQCEENLTPVIGGY-PVEKFVATMYHYLQFAYYKLNDLKNAAPCAVSYLLFDQND 328
           VL C+ +C   L    G   P+E F+   Y YLQFAYY++ +   A  CA +YLL   +D
Sbjct: 280 VLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDD 339

Query: 329 KVMQQNLVYYQYHRDTWGLSDEHFQPRPEAVQFFNVTTLQKELYDFAKENI 379
           + +  N+ YY+   D   +     + R +   F     L+ EL   A E +
Sbjct: 340 EDVLDNVDYYESLLDD-SIDPASIEAREDLTMFVKRHKLESELIKSAAEGL 389


>gi|28466983 leprecan-like 2 [Homo sapiens]
          Length = 736

 Score =  117 bits (292), Expect = 2e-26
 Identities = 103/370 (27%), Positives = 161/370 (43%), Gaps = 51/370 (13%)

Query: 48  YRHALDKYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAP----------QPEPA 97
           Y   L  Y+   WA +V  L  +LR    L      C  +C+A P           PEP 
Sbjct: 41  YADGLRAYAAGAWAPAVALLREALRSQAALGRVRLDCGASCAADPGAALPAVLLGAPEPD 100

Query: 98  AGLASYP---ELRLFGGLLRRAHCLKRCKQ------GLPAFRQSQPSREVLADFQRREPY 148
           +G        E +L    LRRA CL +C        G    R     R+    F+RREPY
Sbjct: 101 SGPGPTQGSWERQLLRAALRRADCLTQCAARRLGPGGAARLRVGSALRDA---FRRREPY 157

Query: 149 KFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPGAE-DYIKDLETKSYE 207
            +LQ AY++   L  A AAAHTF + +P    M+ +MA Y+ + G      +DLET  + 
Sbjct: 158 NYLQRAYYQLKKLDLAAAAAHTFFVANPMHLQMREDMAKYRRMSGVRPQSFRDLETPPHW 217

Query: 208 SLFIRAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKD--------- 258
           + +   +     +    ++  +E AL         C A CEG  E +  ++         
Sbjct: 218 AAYDTGLELLGRQEAGLALPRLEEALQGSLAQMESCRADCEGPEEQQGAEEEEDGAASQG 277

Query: 259 -FYLSIADHYVEVLECKIQC-EENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNAAP 316
             Y +IA H+++VL+C+ +C  E  T     +PV  F+      L  A+ ++ +L  A  
Sbjct: 278 GLYEAIAGHWIQVLQCRQRCVGETATRPGRSFPVPDFLPNQLRRLHEAHAQVGNLSQAIE 337

Query: 317 CAVSYLLFDQNDKVMQQNLVYYQYHRDTWGLSDEHFQPRP-----EAVQFFNVTTL--QK 369
             +S LLF   D+  ++ L  YQ             +PRP     E +Q F + +L  ++
Sbjct: 338 NVLSVLLFYPEDEAAKRALNQYQAQLG---------EPRPGLGPREDIQRFILRSLGEKR 388

Query: 370 ELYDFAKENI 379
           +LY +A E++
Sbjct: 389 QLY-YAMEHL 397


>gi|197313662 leprecan-like 1 isoform b [Homo sapiens]
          Length = 527

 Score = 99.8 bits (247), Expect = 4e-21
 Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 9/207 (4%)

Query: 181 MKRNMAYYKSLPGAEDY-IKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKA 239
           M++N+  Y++  G E   + D E K +   +   V+ Y  +++  +I   E AL ++F  
Sbjct: 3   MQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYFVE 62

Query: 240 FYECLAACEGSREIKDFK------DFYLSIADHYVEVLECKIQCEENLTPVIGGY-PVEK 292
             EC   CEG +  ++++        Y +IADHY++VL C+ +C   L    G   P+E 
Sbjct: 63  DTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPIEN 122

Query: 293 FVATMYHYLQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQNLVYYQYHRDTWGLSDEHF 352
           F+   Y YLQFAYY++ +   A  CA +YLL   +D+ +  N+ YY+   D   +     
Sbjct: 123 FLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDD-SIDPASI 181

Query: 353 QPRPEAVQFFNVTTLQKELYDFAKENI 379
           + R +   F     L+ EL   A E +
Sbjct: 182 EAREDLTMFVKRHKLESELIKSAAEGL 208



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 148 YKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPGAEDYIKDLETKSYE 207
           Y +LQFAY++     KA+  A  +LL HPDDE +  N+ YY+SL   +D I     ++ E
Sbjct: 128 YDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESL--LDDSIDPASIEARE 185

Query: 208 SL 209
            L
Sbjct: 186 DL 187


>gi|33589818 prolyl 4-hydroxylase, alpha III subunit precursor [Homo
           sapiens]
          Length = 544

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/75 (29%), Positives = 38/75 (50%)

Query: 117 HCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHP 176
           H +   ++ +  FR S    +   +    +    L FAYF+A N+  A++ +  FLL  P
Sbjct: 199 HAIPWLEEAVSLFRGSYGEWKTEDEASLEDALDHLAFAYFRAGNVSCALSLSREFLLYSP 258

Query: 177 DDEMMKRNMAYYKSL 191
           D++ M RN+  Y+ L
Sbjct: 259 DNKRMARNVLKYERL 273


>gi|108773804 Fraser syndrome 1 [Homo sapiens]
          Length = 4011

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 84  CHRNCSAAPQPEPAAGLASYPELRLFGGLLRRAHCLKRCKQG 125
           CH +C++   P P+   A  P   L     R+ HCL RC +G
Sbjct: 608 CHNSCASCSGPTPSHCTACSPPKAL-----RQGHCLPRCGEG 644


>gi|221554526 coiled-coil domain containing 42B [Homo sapiens]
          Length = 308

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 71  LRLHRLLRDSEAFCHRNCSAAPQPEPAAGLASYPELRLFGGL--LRRAHC--LKRCKQGL 126
           +R  + L+DSEA  +R    A +    AG      LRL+  L  LRR H    +R K+  
Sbjct: 82  IRFDKFLQDSEARRNRALRRAAEERHQAGRREVEALRLWTQLQELRREHARLQRRLKRLE 141

Query: 127 PAFRQSQPSREVLADFQ 143
           P  R  + + E+L  FQ
Sbjct: 142 PCARLLEQALELLPGFQ 158


>gi|237649104 bromodomain containing 9 isoform 1 [Homo sapiens]
          Length = 597

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 10/56 (17%)

Query: 127 PAFRQSQPSREVLADF----QRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDD 178
           PA  +S P +++L  F    QR++P+ F  F       +  AIA  ++ ++KHP D
Sbjct: 133 PAENESTPIQQLLEHFLRQLQRKDPHGFFAFP------VTDAIAPGYSMIIKHPMD 182


>gi|14670354 general transcription factor II, i isoform 3 [Homo
           sapiens]
          Length = 977

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 212 RAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIADHYVEVL 271
           R VR +N E W   ITD+   + + F+  Y      +G   I  +  F   + D YVE L
Sbjct: 323 RKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTI-PYPLFQSHVEDLYVEGL 381


>gi|14670352 general transcription factor II, i isoform 2 [Homo
           sapiens]
          Length = 978

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 212 RAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIADHYVEVL 271
           R VR +N E W   ITD+   + + F+  Y      +G   I  +  F   + D YVE L
Sbjct: 324 RKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTI-PYPLFQSHVEDLYVEGL 382


>gi|14670350 general transcription factor II, i isoform 1 [Homo
           sapiens]
          Length = 998

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 212 RAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIADHYVEVL 271
           R VR +N E W   ITD+   + + F+  Y      +G   I  +  F   + D YVE L
Sbjct: 344 RKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTI-PYPLFQSHVEDLYVEGL 402


>gi|169881252 general transcription factor II, i isoform 4 [Homo
           sapiens]
          Length = 957

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 212 RAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIADHYVEVL 271
           R VR +N E W   ITD+   + + F+  Y      +G   I  +  F   + D YVE L
Sbjct: 303 RKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTI-PYPLFQSHVEDLYVEGL 361


>gi|210147446 hypothetical protein LOC120406 [Homo sapiens]
          Length = 559

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 268 VEVLEC------KIQCEENL-TPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNAAPCAVS 320
           +EV+ C      K  C+  + TP   GY ++K   T +        K N+ KN   C   
Sbjct: 303 IEVIPCNKSENIKKNCQIGMKTPFPSGYTLKKMWITAF----CKQIKFNETKNINDCLER 358

Query: 321 YLLFDQNDKVMQQNLVYYQYHRDTWGLSDEH 351
            L++   D  + Q + Y Q    T    D H
Sbjct: 359 KLIYLMGDSTLHQWIYYLQKAVKTLKYFDHH 389


>gi|19743905 RAR-related orphan receptor A isoform d [Homo sapiens]
          Length = 468

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 196 DYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKA 239
           D I  L+  S E +FIR  RA++ +N  T   D + A PD FK+
Sbjct: 296 DQIVLLKAGSLEVVFIRMCRAFDSQN-NTVYFDGKYASPDVFKS 338


>gi|4506577 RAR-related orphan receptor A isoform c [Homo sapiens]
          Length = 548

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 196 DYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKA 239
           D I  L+  S E +FIR  RA++ +N  T   D + A PD FK+
Sbjct: 376 DQIVLLKAGSLEVVFIRMCRAFDSQN-NTVYFDGKYASPDVFKS 418


>gi|19743901 RAR-related orphan receptor A isoform b [Homo sapiens]
          Length = 556

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 196 DYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKA 239
           D I  L+  S E +FIR  RA++ +N  T   D + A PD FK+
Sbjct: 384 DQIVLLKAGSLEVVFIRMCRAFDSQN-NTVYFDGKYASPDVFKS 426


>gi|19743903 RAR-related orphan receptor A isoform a [Homo sapiens]
          Length = 523

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 196 DYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKA 239
           D I  L+  S E +FIR  RA++ +N  T   D + A PD FK+
Sbjct: 351 DQIVLLKAGSLEVVFIRMCRAFDSQN-NTVYFDGKYASPDVFKS 393


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,936,569
Number of Sequences: 37866
Number of extensions: 725427
Number of successful extensions: 1604
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1539
Number of HSP's gapped (non-prelim): 34
length of query: 401
length of database: 18,247,518
effective HSP length: 104
effective length of query: 297
effective length of database: 14,309,454
effective search space: 4249907838
effective search space used: 4249907838
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.