Guide to the Human Genome
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Name: LEPRE1 Sequence: fasta or formatted (697aa) NCBI GI: 226371643
Description:

leprecan 1 isoform 2

Referenced in:

Collagen

Other entries for this name:
alt prot [736aa] leprecan 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         69           3
 C cysteine            2.2         15           1
 D aspartate           4.4         31           2
 E glutamate           9.2         64           2
 F phenylalanine       4.4         31           2
 G glycine             5.9         41           2
 H histidine           2.4         17           1
 I isoleucine          2.4         17           1
 K lysine              4.0         28           1
 L leucine            10.0         70           2
 M methionine          2.0         14           1
 N asparagine          3.6         25           1
 P proline             4.9         34           2
 Q glutamine           4.7         33           2
 R arginine            6.6         46           2
 S serine              5.6         39           2
 T threonine           5.0         35           2
 V valine              6.5         45           2
 W tryptophan          0.9          6           1
 Y tyrosine            5.3         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leprecan 1 isoform 2 
LEPRE1                0.984   leprecan 1 isoform 1 
LEPREL1               0.453   leprecan-like 1 isoform a 
LEPREL2               0.378   leprecan-like 2 
LEPREL1               0.364   leprecan-like 1 isoform b 
CRTAP                 0.136   cartilage associated protein precursor 
SC65                  0.117   synaptonemal complex protein SC65 
LOC100134403          0.036   PREDICTED: similar to cartilage associated protein ...
C17orf101             0.023   hypothetical protein LOC79701 isoform 1 
P4HA3                 0.009   prolyl 4-hydroxylase, alpha III subunit precursor [H...
NOP14                 0.007   probable nucleolar complex protein 14 
EGLN1                 0.007   egl nine homolog 1 
RBBP6                 0.006   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.006   retinoblastoma-binding protein 6 isoform 1 
RTN4                  0.005   reticulon 4 isoform E 
RTN4                  0.005   reticulon 4 isoform A 
EP400                 0.005   E1A binding protein p400 
C1orf173              0.005   hypothetical protein LOC127254 
EGLN2                 0.004   EGL nine (C.elegans) homolog 2 
EGLN2                 0.004   EGL nine (C.elegans) homolog 2 
P4HA1                 0.004   prolyl 4-hydroxylase, alpha I subunit isoform 1 prec...
P4HA1                 0.004   prolyl 4-hydroxylase, alpha I subunit isoform 3 pre...
P4HA1                 0.004   prolyl 4-hydroxylase, alpha I subunit isoform 2 pre...
P4HA1                 0.004   prolyl 4-hydroxylase, alpha I subunit isoform 2 prec...
EGLN3                 0.004   egl nine homolog 3 
EIF4ENIF1             0.004   eukaryotic translation initiation factor 4E nuclear i...
C7orf58               0.004   hypothetical protein LOC79974 isoform 2 
C7orf58               0.004   hypothetical protein LOC79974 isoform 1 
DBF4                  0.004   activator of S phase kinase 
INO80B                0.004   high mobility group AT-hook 1-like 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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