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Search of human proteins with 53759129
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|53759129 proline rich 13 isoform 2 [Homo sapiens]
(98 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|53759129 proline rich 13 isoform 2 [Homo sapiens] 223 3e-59
gi|8922157 proline rich 13 isoform 1 [Homo sapiens] 207 1e-54
gi|169203084 PREDICTED: hypothetical protein [Homo sapiens] 169 4e-43
gi|210032580 SET domain containing 1B [Homo sapiens] 50 4e-07
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 47 3e-06
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 47 3e-06
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 47 3e-06
gi|145309324 FH2 domain containing 1 [Homo sapiens] 45 1e-05
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens] 45 1e-05
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens] 45 1e-05
gi|157168329 formin 1 [Homo sapiens] 44 4e-05
gi|33356148 formin-like 1 [Homo sapiens] 44 4e-05
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 43 5e-05
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 43 6e-05
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 43 6e-05
gi|7706501 WW domain binding protein 11 [Homo sapiens] 43 6e-05
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 42 8e-05
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 42 1e-04
gi|21071077 dishevelled-associated activator of morphogenesis 1 ... 41 2e-04
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 41 2e-04
gi|38194229 kelch-like 17 [Homo sapiens] 41 2e-04
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 40 3e-04
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 40 5e-04
gi|24497513 homeobox A3 isoform a [Homo sapiens] 40 5e-04
gi|13562112 homeobox A3 isoform a [Homo sapiens] 40 5e-04
gi|11386183 WAS protein family, member 2 [Homo sapiens] 40 5e-04
gi|160707881 formin 2 [Homo sapiens] 40 5e-04
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 40 5e-04
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 40 5e-04
gi|150417989 cyclin K isoform 1 [Homo sapiens] 40 5e-04
>gi|53759129 proline rich 13 isoform 2 [Homo sapiens]
Length = 98
Score = 223 bits (567), Expect = 3e-59
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MWNPNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQ 60
MWNPNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQ
Sbjct: 1 MWNPNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQ 60
Query: 61 KKMKKAHKKMHKHQKHHKYHKHGKHSSSSSSSSSSDSD 98
KKMKKAHKKMHKHQKHHKYHKHGKHSSSSSSSSSSDSD
Sbjct: 61 KKMKKAHKKMHKHQKHHKYHKHGKHSSSSSSSSSSDSD 98
>gi|8922157 proline rich 13 isoform 1 [Homo sapiens]
Length = 148
Score = 207 bits (528), Expect = 1e-54
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 7 GGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKA 66
GGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKA
Sbjct: 57 GGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKA 116
Query: 67 HKKMHKHQKHHKYHKHGKHSSSSSSSSSSDSD 98
HKKMHKHQKHHKYHKHGKHSSSSSSSSSSDSD
Sbjct: 117 HKKMHKHQKHHKYHKHGKHSSSSSSSSSSDSD 148
>gi|169203084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 169 bits (428), Expect = 4e-43
Identities = 82/99 (82%), Positives = 83/99 (83%), Gaps = 7/99 (7%)
Query: 1 MWNPNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQ 60
MWNPNAGG PHPVPQPGYPGCQ GP+ PPYPPPAPGIPPVN LAPGMV PAV DKKMQ
Sbjct: 1 MWNPNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKKMQ 60
Query: 61 KKMKKAHKKMHKHQKHHKYHKHGKHSSSS-SSSSSSDSD 98
KMKKAHKKMHKHQ KHGKHSSSS SSSSSSDSD
Sbjct: 61 NKMKKAHKKMHKHQ------KHGKHSSSSFSSSSSSDSD 93
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 50.1 bits (118), Expect = 4e-07
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGI---PPVNPLAPGMVGPAVI 54
PP P PQPG+P PL P PPP PP P + PP P PG+ P ++
Sbjct: 694 PPPPPPQPGFPMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPPPPIL 742
Score = 42.7 bits (99), Expect = 6e-05
Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNP 43
P G PP P P P P QP P PPP PPP P PP +P
Sbjct: 683 PPPGFPPLPPPPPPPPP-QPGFPMPPPLPPPPPPPPPAHP 721
Score = 42.4 bits (98), Expect = 8e-05
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAP 46
P+ P P+P P PG PL P PPP PPP PG P PL P
Sbjct: 672 PSVLAPTLPLPPP--PGFPPLPPPPPP-PPPQPGFPMPPPLPP 711
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 13/39 (33%)
Query: 5 NAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNP 43
NAG P P P P P PPP PPP PPV P
Sbjct: 1533 NAGIPAPPPPLP---------PQPPPPPPP----PPVEP 1558
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 16/57 (28%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPA--------PGIPPVNPLA-------PGMVG 50
PP +P P P P P PP PPP P +PP PLA PG+ G
Sbjct: 1270 PPMMLPLPLQPPLPPPRPPRPPSPPPEPETTDASHPSVPP-EPLAEDHPPHTPGLCG 1325
Score = 27.3 bits (59), Expect = 2.7
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 9 PPHPVPQP---GYPGCQPLGPYPP----------------PYPPPAPGIPPVNPLAPGMV 49
PP P +P PG P GP PP P P +PG P + G
Sbjct: 435 PPLPPAEPLAKEKPGTPP-GPPPPDTNSMELGGRPTFGWSPEPCDSPGTPTLESSPAGPE 493
Query: 50 GPAVIVDKKMQKKMKKAHKK---MHKHQKHHKYHKHGKHSSSSSSSSS 94
P +D +++ +K+ K + + + G SSSSS S
Sbjct: 494 KPHDSLDSRIEMLLKEQRTKLLFLREPDSDTELQMEGSPISSSSSQLS 541
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 3 NPNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPV 41
+P PP P+P P P+ P PP+P PG+ PV
Sbjct: 720 HPAVTVPPPPLPAPPGVPPPPILPPLPPFP---PGLFPV 755
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 21/88 (23%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYP--------------PPYPPPAPGIP-------PVN 42
P GP P +P G + + P P P PPP PG P
Sbjct: 552 PGFRGPTPPSSRPSSTGLEDISPTPLPDSDEDEELDLGLGPRPPPEPGPPDPAGLLSQTA 611
Query: 43 PLAPGMVGPAVIVDKKMQKKMKKAHKKM 70
+A +VG +KM + + + + M
Sbjct: 612 EVALDLVGDRTPTSEKMDEGQQSSGEDM 639
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 28 PPPYPPPAPGIPPVNPLAP 46
PPP PP P PP P+ P
Sbjct: 1540 PPPLPPQPPPPPPPPPVEP 1558
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 28 PPPYPPPAPGIPPVNPLAPGMVGP 51
PPP PP P PP P PG P
Sbjct: 683 PPPGFPPLPPPPPPPPPQPGFPMP 706
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 47.0 bits (110), Expect = 3e-06
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 6 AGGPPHPVPQPGYPGCQPLGPYPP----PYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQK 61
AG PP P P PG PG P P+P P PPP G+PP P G+ V+ K
Sbjct: 702 AGMPPPPPPLPGGPGIPPPPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAPVLPFGLTPK 761
Query: 62 KMKKAHKKMHK 72
K+ K ++ +
Sbjct: 762 KLYKPEVQLRR 772
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/55 (41%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYP-----PPYPPPAP---GIPPVNPLAPGMVG 50
P G P P PG P P P PP PPP P GIPP P PG G
Sbjct: 649 PEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAG 703
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPY---------PPPAPGIPPVNPLAPGMVGPAV 53
P G P P P PG + P PPP PPP PG P + P P GP +
Sbjct: 671 PLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPGI 729
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 4 PNAGGPPHP------VPQPGYPGCQPLGPYPPPYPPPAPGIP 39
P PP P +P P PG P PPP PPP P +P
Sbjct: 572 PVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLP 613
Score = 32.7 bits (73), Expect = 0.064
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 12 PVPQPGYPGCQPLGPYPPPYPPPAPG 37
P P PG P P PPP PPP PG
Sbjct: 589 PPPAPGDSTTPPPPPPPPPPPPPLPG 614
Score = 32.3 bits (72), Expect = 0.083
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 9 PPHPVPQP---GYPGCQPLGPYPPPYPPPAPG---IPPVNPLAPGMVG 50
PP P+P+ P P G PP PPP PG IPP P PG G
Sbjct: 644 PPPPLPEGVGIPSPSSLPGGTAIPP-PPPLPGSARIPPPPPPLPGSAG 690
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 9 PPHPVPQPGYPGC---QPLGPYPPPYPPPAPGIPPVNPLAPGMV 49
PP P P PG G P P PPP P PP P PG V
Sbjct: 574 PPAP-PLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGV 616
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 47.0 bits (110), Expect = 3e-06
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 6 AGGPPHPVPQPGYPGCQPLGPYPP----PYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQK 61
AG PP P P PG PG P P+P P PPP G+PP P G+ V+ K
Sbjct: 711 AGMPPPPPPLPGGPGIPPPPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAPVLPFGLTPK 770
Query: 62 KMKKAHKKMHK 72
K+ K ++ +
Sbjct: 771 KLYKPEVQLRR 781
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/55 (41%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYP-----PPYPPPAP---GIPPVNPLAPGMVG 50
P G P P PG P P P PP PPP P GIPP P PG G
Sbjct: 658 PEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAG 712
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPY---------PPPAPGIPPVNPLAPGMVGPAV 53
P G P P P PG + P PPP PPP PG P + P P GP +
Sbjct: 680 PLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPGI 738
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 4 PNAGGPPHP------VPQPGYPGCQPLGPYPPPYPPPAPGIP 39
P PP P +P P PG P PPP PPP P +P
Sbjct: 581 PVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLP 622
Score = 32.7 bits (73), Expect = 0.064
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 12 PVPQPGYPGCQPLGPYPPPYPPPAPG 37
P P PG P P PPP PPP PG
Sbjct: 598 PPPAPGDSTTPPPPPPPPPPPPPLPG 623
Score = 32.3 bits (72), Expect = 0.083
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 9 PPHPVPQP---GYPGCQPLGPYPPPYPPPAPG---IPPVNPLAPGMVG 50
PP P+P+ P P G PP PPP PG IPP P PG G
Sbjct: 653 PPPPLPEGVGIPSPSSLPGGTAIPP-PPPLPGSARIPPPPPPLPGSAG 699
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 9 PPHPVPQPGYPGC---QPLGPYPPPYPPPAPGIPPVNPLAPGMV 49
PP P P PG G P P PPP P PP P PG V
Sbjct: 583 PPAP-PLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGV 625
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 47.0 bits (110), Expect = 3e-06
Identities = 23/36 (63%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 5 NAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPP 40
NAGGPP P P G P P GP PPP PPP PG+PP
Sbjct: 158 NAGGPPAP-PAGGPP--PPPGPPPPPGPPPPPGLPP 190
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPY-----PPPAPGIPPVNPLAPGMVG----PAVI 54
P GPP P P PG P G + PPPAP +P G G A I
Sbjct: 171 PPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLAAAI 230
Query: 55 VDKKMQKKMKK 65
K++K K+
Sbjct: 231 AGAKLRKVSKQ 241
>gi|145309324 FH2 domain containing 1 [Homo sapiens]
Length = 1143
Score = 45.4 bits (106), Expect = 1e-05
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 4 PNAGGPPHPVPQPGYPGCQ------PLGPYPPPYPPPAPGIPPVNPLAPGM 48
P PP P P P P C P P PPP PPP PG PP+ P PG+
Sbjct: 30 PPPAPPPPPPPPPPSPPCSCSREECPSSPPPPP-PPPLPGEPPIPPPPPGL 79
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 16 PGYPGCQPLGPYPPPYPPPAPGIPP 40
PG+ Q P PPP PPP P PP
Sbjct: 22 PGFMIGQTPPPAPPPPPPPPPPSPP 46
Score = 30.0 bits (66), Expect = 0.41
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 24 LGPYPPPYPPPAPGIPPVNP 43
+G PPP PPP P PP +P
Sbjct: 26 IGQTPPPAPPPPPPPPPPSP 45
>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
Length = 1096
Score = 45.1 bits (105), Expect = 1e-05
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 8 GPPHPVPQPGYPGCQPLGPYPPPYP-----PPAP-------GIPPVNPLAPGMVGPAVIV 55
GPP P P P PG PL P PPP P PP P G PP PL P + +
Sbjct: 561 GPPPPPPAPPLPGGAPLPPPPPPLPGMMGIPPPPPPPLLFGGPPPPPPLGGVPPPPGISL 620
Query: 56 DKKMQKKMKKAHK 68
+ K KK +K
Sbjct: 621 NLPYGMKQKKMYK 633
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 8 GPPHPVPQPGYPGCQPLGPYPPPYPPPAPG---IPPVNPLAPGMVG 50
GPP P PG +GP PPP PP PG +PP P PGM+G
Sbjct: 550 GPPAAPPLPG------VGPPPPPPAPPLPGGAPLPPPPPPLPGMMG 589
>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
Length = 1101
Score = 45.1 bits (105), Expect = 1e-05
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 8 GPPHPVPQPGYPGCQPLGPYPPPYP-----PPAP-------GIPPVNPLAPGMVGPAVIV 55
GPP P P P PG PL P PPP P PP P G PP PL P + +
Sbjct: 561 GPPPPPPAPPLPGGAPLPPPPPPLPGMMGIPPPPPPPLLFGGPPPPPPLGGVPPPPGISL 620
Query: 56 DKKMQKKMKKAHK 68
+ K KK +K
Sbjct: 621 NLPYGMKQKKMYK 633
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 8 GPPHPVPQPGYPGCQPLGPYPPPYPPPAPG---IPPVNPLAPGMVG 50
GPP P PG +GP PPP PP PG +PP P PGM+G
Sbjct: 550 GPPAAPPLPG------VGPPPPPPAPPLPGGAPLPPPPPPLPGMMG 589
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 43.5 bits (101), Expect = 4e-05
Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 4 PNAGGPPHPVPQPGYPGCQP---LGPYPPPYPPPA--------PGIPPVNPLAPGMVGP 51
P + GPP P P P P P GP PPP PPP PG PP P PG+ P
Sbjct: 673 PVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAPP 731
Score = 35.8 bits (81), Expect = 0.008
Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYP-----PPYPPPAPGIPPVNPLAPGMVGP 51
P A PP P G P P P PP PPP P PP+ P P GP
Sbjct: 648 PPASIPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPPPLPP--PSSAGP 698
Score = 35.8 bits (81), Expect = 0.008
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 5 NAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGM 48
+AG PP P P P P P PP PP PG+ P P PG+
Sbjct: 695 SAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAP--PPPPGL 736
Score = 33.1 bits (74), Expect = 0.049
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAP 46
PP P G P P P PPP PPP+ PP P P
Sbjct: 669 PPMPPVSAG-PPLPPPPPPPPPLPPPSSAGPPPPPPPP 705
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAP-----GIPPVNPLAPGMVGPA 52
P+ G P P P P PPP PPP P G PP P P PA
Sbjct: 659 PSGLGSLSPAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPA 712
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 11/54 (20%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPP-----------YPPPAPGIPPVNPLAP 46
PN+ PP+P P P L P PPP P P I P P+ P
Sbjct: 708 PNSPAPPNPGGPPPAPPPPGLAPPPPPGLFFGLGSSSSQCPRKPAIEPSCPMKP 761
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 43.5 bits (101), Expect = 4e-05
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPP----PAPGIPPVNPLAPG-----------M 48
P G P P P P PG P P PPP PP P P PP P PG
Sbjct: 566 PPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGGPPDALGRRDSE 625
Query: 49 VGPAVIVDKKMQKKMK 64
+GP V K +Q K +
Sbjct: 626 LGPGVKAKKPIQTKFR 641
Score = 41.2 bits (95), Expect = 2e-04
Identities = 21/45 (46%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGI--PPVNPLAPGMVGP 51
PP P P PG P Q P PP PP PG PP P PG + P
Sbjct: 542 PPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPP 586
Score = 36.6 bits (83), Expect = 0.004
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
PP P PG P P P P PPP P PP PG GP
Sbjct: 562 PPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPP----PPGTDGP 600
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 4 PNAGGPPHP-----VPQPGY-PGCQPLGPYPPPYPPPAPGIP---PVNPLAPGMVGP 51
P+ G P P P P P +P PP PPP PG+P P AP P
Sbjct: 511 PSGGDAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPP 567
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 43.1 bits (100), Expect = 5e-05
Identities = 29/67 (43%), Positives = 30/67 (44%), Gaps = 19/67 (28%)
Query: 4 PNAGG-PPHPVPQPGYP-GCQPLGPYPPPYPPPAPGI--------------PPVNPLA-- 45
PN G PP PV PG P G PLGP PP PPP PG PP P
Sbjct: 267 PNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPR 326
Query: 46 -PGMVGP 51
PG +GP
Sbjct: 327 PPGPLGP 333
Score = 42.4 bits (98), Expect = 8e-05
Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 7 GGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
GGPP P P P PLGP PP PP P PP L P + GP
Sbjct: 224 GGPPPPFPAGQTPPRPPLGPPGPPGPPGPP--PPGQVLPPPLAGP 266
Score = 42.0 bits (97), Expect = 1e-04
Identities = 25/56 (44%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 4 PNAGGPPH-------PVPQPGYP-GCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P GPP+ PV PG P G PLGP PP PPP PG P P GP
Sbjct: 261 PPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGP 316
Score = 33.9 bits (76), Expect = 0.029
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 2 WNPNAGGPP---HPVPQPGYPGCQPLGPYPPPY----PPPAPGIPPVNPLAPGMVGPA 52
+ P G PP P P PG +P GP PP PP PG PP P V PA
Sbjct: 303 YGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA 360
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 18 YPGCQPLGPYPPPYPPPAPGIPPVNPLA-PGMVGP 51
+PG P GP PP P PA PP PL PG GP
Sbjct: 217 FPG--PAGPGGPPPPFPAGQTPPRPPLGPPGPPGP 249
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 4 PNAGGPPHPVP----QPGYPGCQ-----PLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P GPP PVP PG P Q P GP+PP PP G P P + GP
Sbjct: 291 PLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPR-PPGPLGPPLTLAPPPHLPGP 346
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 4 PNAGGPPHPV-PQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAP 46
P GPP + P P PG P P P P+ PA PP N P
Sbjct: 328 PGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMP 371
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/71 (36%), Positives = 27/71 (38%), Gaps = 25/71 (35%)
Query: 4 PNAGGPPHPVP-QPGYPGCQPLGPYPP----PYP----------PPAP--------GIPP 40
P PP P PG PG P GP PP P P PP P G PP
Sbjct: 231 PAGQTPPRPPLGPPGPPG--PPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPP 288
Query: 41 VNPLAPGMVGP 51
+ PL PG P
Sbjct: 289 LGPLPPGPPPP 299
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 42.7 bits (99), Expect = 6e-05
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 9 PPHPVPQ-PGYPGCQPLGPYPP-PYPPPAPGIPPVNPLAPGMVGPAV 53
PP P+P P P P+ PP P PPP P +PPV P+ P P+V
Sbjct: 186 PPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSV 232
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 16/57 (28%)
Query: 9 PPHPVPQPGYPGCQPLGPYPP--PYP--------PPAPGIPPVNP-----LAPGMVG 50
PP PVP P P P+ P PP P P PP G+PP+NP L GM G
Sbjct: 206 PPIPVPPP-VPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNG 261
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 42.7 bits (99), Expect = 6e-05
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 9 PPHPVPQ-PGYPGCQPLGPYPP-PYPPPAPGIPPVNPLAPGMVGPAV 53
PP P+P P P P+ PP P PPP P +PPV P+ P P+V
Sbjct: 186 PPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSV 232
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 16/57 (28%)
Query: 9 PPHPVPQPGYPGCQPLGPYPP--PYP--------PPAPGIPPVNP-----LAPGMVG 50
PP PVP P P P+ P PP P P PP G+PP+NP L GM G
Sbjct: 206 PPIPVPPP-VPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNG 261
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 42.7 bits (99), Expect = 6e-05
Identities = 27/49 (55%), Positives = 30/49 (61%), Gaps = 7/49 (14%)
Query: 8 GPPHPVPQPGYP-GCQPLGPYPPPYPPPAP-GIPPVNPLAPGMVGPAVI 54
GPP P P PG P G P GP PP PPPAP GIPP PGM+ P ++
Sbjct: 469 GPP-PGPPPGLPPGPPPRGP-PPRLPPPAPPGIPPPR---PGMMRPPLV 512
Score = 42.7 bits (99), Expect = 6e-05
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPG------IPPVNPLAPGMVGPA 52
P G PP P P+ P P P PP PPP PG +PP+ P PG+ PA
Sbjct: 474 PPPGLPPGPPPRGPPPRLPP--PAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPA 526
Score = 39.3 bits (90), Expect = 7e-04
Identities = 25/61 (40%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYP-----PPYPP------PAPGIPPV--NPLAPGMVG 50
P PP + P PG PLGP P PP PP P PG PP P PG+ G
Sbjct: 393 PPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRG 452
Query: 51 P 51
P
Sbjct: 453 P 453
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGP---YPPPYPPPAPGIPPVNPLAPGMVGPAVI 54
P GPP +P P PG P P PP PP P P + P AP + P V+
Sbjct: 482 PPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAP-LPNPGVL 534
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 14/52 (26%)
Query: 4 PNAGGPPHPVPQPGYPGCQ-------PLGPYP-----PPYPPPAPGIPPVNP 43
P G PP P PG PG + P GP P PP P P PG+PP P
Sbjct: 434 PPPGAPPFLRP-PGMPGLRGPLPRLLPPGPPPGRPPGPP-PGPPPGLPPGPP 483
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 42.4 bits (98), Expect = 8e-05
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPP----PAPGIPPVNPLAPGMVGP 51
P+ P P P P PG P GPYP P P P P P +P A G +GP
Sbjct: 93 PSCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGP 144
Score = 39.7 bits (91), Expect = 5e-04
Identities = 24/57 (42%), Positives = 25/57 (43%), Gaps = 15/57 (26%)
Query: 2 WNPNAGG----PPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNP---LAPGMVGP 51
W P GG P P P P GPYP P PP APG P P + PG GP
Sbjct: 153 WAPGMGGQYPTPNMPYPSP--------GPYPAPPPPQAPGAAPPVPWGTVPPGAWGP 201
Score = 32.7 bits (73), Expect = 0.064
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 9 PPHPVPQPGYPGCQPLGPYP---PPYPPPAPGIPPVN-----PLAPG 47
P P P YP P GP P P+PP P PP P PG
Sbjct: 63 PFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVPG 109
Score = 32.3 bits (72), Expect = 0.083
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 6 AGGPPHPVPQPGYPGCQPLGPYP------PPYPPPAPGIPPVNPLAPGMVGP 51
+G PP P G P G YP PP PPAP PP P P GP
Sbjct: 51 SGLPPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAP-FPPSGPSCPPPGGP 101
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P A GPP P P P G YP P P P P P P P
Sbjct: 196 PGAWGPPAPYPAP-------TGSYPTPGLYPTPSNPFQVPSGPSGAPP 236
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 42.0 bits (97), Expect = 1e-04
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 58 KMQKKMKKAHKKMHKHQKHHKYHKHGKHSSSSSSSSSSDS 97
+++KK KK +K K QK HK K SSSSSSSSSS S
Sbjct: 230 RLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSS 269
Score = 39.3 bits (90), Expect = 7e-04
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 57 KKMQKKMKKAHKKMHKHQKHHKYHKHGKHSSSSSSSSSS 95
+K +KK + KK K + HK HK SSSSSSSSSS
Sbjct: 232 EKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSS 270
Score = 36.6 bits (83), Expect = 0.004
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 57 KKMQKKMKKAHKKMHKHQKHHKYHKHGKHSSSSSSSSSSDS 97
KK +K KK K KH+KH SSSSSS+ +S+S
Sbjct: 236 KKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSES 276
Score = 36.2 bits (82), Expect = 0.006
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 55 VDKKMQKKMKKAHKKMHKHQKHHKYHKHGKHSSSSSSSSSSDS 97
++KK +KK +K K KH K+ SSSSSSSSS+++
Sbjct: 231 LEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTET 273
>gi|21071077 dishevelled-associated activator of morphogenesis 1
[Homo sapiens]
Length = 1078
Score = 41.2 bits (95), Expect = 2e-04
Identities = 21/50 (42%), Positives = 24/50 (48%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKK 58
PP P P PG P P PP PPP PG PP+ + P P + KK
Sbjct: 551 PPPPPPLPGGMLPPPPPPLPPGGPPPPPGPPPLGAIMPPPGAPMGLALKK 600
Score = 38.5 bits (88), Expect = 0.001
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 7 GGPPHPVPQPGYPGCQPLGPYPPPYPPPAPG---IPPVNPLAPG 47
GGP P +P P PPP PPP PG PP PL PG
Sbjct: 529 GGPSPGAPGGPFPSSVPGSLLPPPPPPPLPGGMLPPPPPPLPPG 572
Score = 34.7 bits (78), Expect = 0.017
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 3 NPNAGGPPHPVPQPGY------PGCQPLGPYPPPYPPPAPGIPPVNPLAP 46
+P A G P P PG P P G PPP PP PG PP P P
Sbjct: 532 SPGAPGGPFPSSVPGSLLPPPPPPPLPGGMLPPPPPPLPPGGPPPPPGPP 581
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 14 PQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P PG PG GP+P P PP PL GM+ P
Sbjct: 531 PSPGAPG----GPFPSSVPGSLLPPPPPPPLPGGMLPP 564
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPP--PAPGIP 39
P GG P P P PG P P PPP P PG P
Sbjct: 556 PLPGGMLPPPPPPLPPGGPPPPPGPPPLGAIMPPPGAP 593
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 3 NPNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPA---PGIPPV---NPLAPGMVG 50
NP +P PG P P G +PPP PPP PGIPP P+ PG G
Sbjct: 222 NPVVSSLGSGLPPPGMP---PPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAG 272
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 8 GPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPL 44
GPP P P GY GP PPP P P P +PP PL
Sbjct: 387 GPPRPPPY-GYQR----GPLPPPRPTPRPPVPPRGPL 418
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/50 (46%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 4 PNAGGPPHPVPQPGY--PGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P G P PVP PG PG P P PPP PP A G P + PG P
Sbjct: 238 PPPGSFPPPVPPPGALPPGIPPAMP-PPPMPPGAAGHGPPSAGTPGAGHP 286
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 4 PNAGGPPHPVPQPG--YPGCQPLGPYPPPYPPPAPGIPPVNPLAP-GMVGP 51
P +GG P P P PG +PG P+G PP PP + P+ P GM GP
Sbjct: 327 PGSGGQPPPRPPPGMPHPGPPPMG-MPPRGPPFGSPMGHPGPMPPHGMRGP 376
Score = 32.7 bits (73), Expect = 0.064
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAP--GMVGP 51
P+ G PP +P G P P+G +P P PP PP PL P G GP
Sbjct: 342 PHPGPPPMGMPPRGPPFGSPMG-HPGPMPPHGMRGPP--PLMPPHGYTGP 388
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAP---GIPPVNP 43
P+ G PH P PG G P P PP P P P G+PP P
Sbjct: 316 PHGLGHPHAGP-PGSGGQPPPRP-PPGMPHPGPPPMGMPPRGP 356
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 7 GGPPHPVPQP-----------GYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGM 48
GG PHP G+P P G P P P PG+P P GM
Sbjct: 299 GGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGM 351
>gi|38194229 kelch-like 17 [Homo sapiens]
Length = 642
Score = 40.8 bits (94), Expect = 2e-04
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 14 PQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKAHKKMHKH 73
P+ G PG GP PP PPP P P P PA ++ +Q ++ H H
Sbjct: 15 PEHGSPGP---GPEAPPPPPPQPPAPEAERTRPRQARPAAPMEGAVQLLSREGHSVAHNS 71
Query: 74 QKHH 77
++H+
Sbjct: 72 KRHY 75
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 40.4 bits (93), Expect = 3e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPP 40
P++ P P P G P+ P PPP PPP PG PP
Sbjct: 351 PSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGPPP 387
Score = 36.2 bits (82), Expect = 0.006
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 4 PNAGGPPHPVPQPGYPGCQPL------GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P+ GGPP P P P G P P PPP P PP P P + P
Sbjct: 282 PSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVP 335
Score = 35.8 bits (81), Expect = 0.008
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 4 PNAGGPP------HPVPQPGYPGCQPLGPYPPP-----YPPPAPGIPPVNPLAPGMVGP 51
P+ PP +P P P P P GP PPP P AP PP P PG P
Sbjct: 330 PSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGPPPP 388
Score = 35.0 bits (79), Expect = 0.013
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPP---YPPPAPGIPPVNPLAPGMVGPAVI 54
P A PP P +P P PPP YPPP P +P P P P+V+
Sbjct: 318 PTAAPPPPPPSRPSVAV-----PPPPPNRMYPPPPPALPSSAPSGPPPPPPSVL 366
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 4 PNAGGPPHPV---------PQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGM 48
PN PP P P P P +GP PP PPP P PP P PG+
Sbjct: 339 PNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPP-PPPPPPPPPGPPPPPGL 391
Score = 33.1 bits (74), Expect = 0.049
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 8 GPPHPVPQ-----PGYPGCQPLGPYPPPYPPPAPGIP 39
GPP P P P P P P PPP PPP PG+P
Sbjct: 357 GPPPPPPSVLGVGPVAPPPPPPPP-PPPGPPPPPGLP 392
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
PP P P G GP PPP PP G PP P A G P
Sbjct: 277 PPPPPPSRG-------GPPPPPPPPHNSGPPP--PPARGRGAP 310
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 39.7 bits (91), Expect = 5e-04
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPG 47
P AGGPP P P P P G P P PP P + P LAPG
Sbjct: 386 PGAGGPPMPPPPPPPPPPPSSGNGPAP-PPLPPALVPAGGLAPG 428
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 4 PNAGGPPHPVPQ------------PGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P GGPP P P PG G P PPP PPP+ G P P P + P
Sbjct: 362 PGRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPPALVP 421
Query: 52 A 52
A
Sbjct: 422 A 422
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 9 PPHPVPQ-PGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
PP P P+ P PG G PPP PP P+ P PG GP
Sbjct: 351 PPPPTPRGPPPPG---RGGPPPPPPPATGRSGPLPPPPPGAGGP 391
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/50 (42%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 3 NPNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPG-IPPVNPLAPGMVGP 51
N GP PVP G P P P PPP G PP P A G GP
Sbjct: 335 NKGRSGPLPPVPL----GIAPPPPTPRGPPPPGRGGPPPPPPPATGRSGP 380
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGM 48
PP P + G PL P +P G PPV PL+ G+
Sbjct: 162 PPTPANEERRGGLPPL----PLHPGGDQGGPPVGPLSLGL 197
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 39.7 bits (91), Expect = 5e-04
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 4 PNAGGPP---------HPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVI 54
P+ G PP P PQP P QP P P PPP+ PP N A PA
Sbjct: 83 PSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQN--ASNNPTPANA 140
Query: 55 VDKKMQKKMKKAHKKMHKHQKHHKYHKHGKHSSSSSSSS 93
+ A K++ K + + K SSSSS S
Sbjct: 141 AKSPLLNSPTVA-KQIFPWMKESRQNTKQKTSSSSSGES 178
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAP 46
PP P G P PL P PP PPAP P P P
Sbjct: 78 PPSQPPSLGEP---PLHPPPPQAAPPAPQPPQPAPQPP 112
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 29 PPYPPPAPGIPPVNPLAPGMVGPA 52
PP PP+ G PP++P P PA
Sbjct: 78 PPSQPPSLGEPPLHPPPPQAAPPA 101
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 39.7 bits (91), Expect = 5e-04
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 4 PNAGGPP---------HPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVI 54
P+ G PP P PQP P QP P P PPP+ PP N A PA
Sbjct: 83 PSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQN--ASNNPTPANA 140
Query: 55 VDKKMQKKMKKAHKKMHKHQKHHKYHKHGKHSSSSSSSS 93
+ A K++ K + + K SSSSS S
Sbjct: 141 AKSPLLNSPTVA-KQIFPWMKESRQNTKQKTSSSSSGES 178
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAP 46
PP P G P PL P PP PPAP P P P
Sbjct: 78 PPSQPPSLGEP---PLHPPPPQAAPPAPQPPQPAPQPP 112
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 29 PPYPPPAPGIPPVNPLAPGMVGPA 52
PP PP+ G PP++P P PA
Sbjct: 78 PPSQPPSLGEPPLHPPPPQAAPPA 101
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 39.7 bits (91), Expect = 5e-04
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 3 NPNAGGPPHPVPQPGY--------PGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAV 53
+P+ PP P P P P QP G PPP PPP P PP P PA+
Sbjct: 358 HPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPPGPPPPPFTGADGQPAI 416
Score = 36.2 bits (82), Expect = 0.006
Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNP 43
P G PP P P P P PPP PPP GIPP P
Sbjct: 304 PPLGSPPGPKPGFAPP------PAPPPPPPPMIGIPPPPP 337
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVG 50
P HP P P P P GP P PPPAP PP P M+G
Sbjct: 297 PSHPPPAP--PLGSPPGPKPGFAPPPAPPPPP-----PPMIG 331
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 7 GGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNP 43
G PP P P P +P PPP PPPA P + P
Sbjct: 345 GTPPPPSP-PSFPPHPDFAAPPPPPPPPAADYPTLPP 380
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPP 40
P G P P P P P + P PPP +PG PP
Sbjct: 312 PKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPP 348
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 4 PNAGGPPHPVP-QPGYPGCQPLGPYPPPYPP----PAPGIPPVNPLA 45
P G PP P P G PG P P PP +PP AP PP P A
Sbjct: 328 PMIGIPPPPPPVGFGSPGTPP-PPSPPSFPPHPDFAAPPPPPPPPAA 373
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P PP P P G P P + P PP P PP P P P
Sbjct: 318 PPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPS-PPSFPPHPDFAAP 364
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/43 (32%), Positives = 15/43 (34%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAP 46
P G P P P P P + P PPP P L P
Sbjct: 338 PVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPP 380
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 39.7 bits (91), Expect = 5e-04
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGM 48
P AG PP P+P+ G P PL PPP P P GIPP PL PG+
Sbjct: 1136 PGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPL-PGV 1182
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 971 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1021
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 982 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1032
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 993 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1043
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 1004 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1054
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 1015 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1065
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 1026 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1076
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 1037 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1087
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 1048 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1098
Score = 38.9 bits (89), Expect = 9e-04
Identities = 24/48 (50%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGM 48
P AG PP P+P G P PL PPP P P GIPP PL PG+
Sbjct: 1059 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPL-PGV 1105
Score = 38.5 bits (88), Expect = 0.001
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 1070 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGAGIPP 1120
Score = 38.5 bits (88), Expect = 0.001
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 1092 PGAGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1142
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAGGP-PHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG P P P+P G P PL PPP P P GIPP PL + P
Sbjct: 960 PGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1010
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 1114 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPP 1164
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPLG--PYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 1125 PGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPP 1175
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPLG--PYPPPYPPPAPGIPPVNPLAPGMVGP 51
P AG PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 1158 PGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGIPP 1208
Score = 37.4 bits (85), Expect = 0.003
Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 9 PPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGM 48
PP P+P G P PL PPP P P GIPP PL PG+
Sbjct: 1153 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPL-PGV 1193
Score = 37.0 bits (84), Expect = 0.003
Identities = 27/49 (55%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPP---PYPPPAPG--IPPVNPLAPG 47
P AG PP P P PG G PL P P P PPP PG IPP PL PG
Sbjct: 916 PGAGIPPPP-PLPG-AGILPLPPLPGAGIPPPPPLPGAAIPPPPPL-PG 961
Score = 37.0 bits (84), Expect = 0.003
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 9 PPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPLAPGMVGP 51
PP P+P G P PL PPP P P GIPP PL + P
Sbjct: 955 PPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 999
Score = 37.0 bits (84), Expect = 0.003
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 9 PPHPVPQPGYPGCQPL--GPYPPPYPPPAPGIPPVNPL 44
PP P+P G P PL PPP P P GIPP PL
Sbjct: 1109 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPL 1146
Score = 36.6 bits (83), Expect = 0.004
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPLGPYP-PPYPPPAPGIPPVNPLAPGMVGPAVI 54
P AG PP P+P G P P P PP PPP GIPP PL P + GP ++
Sbjct: 1202 PGAGIPPPPPLPGMGIP------PAPAPPLPPPGTGIPP-PPLLP-VSGPPLL 1246
Score = 35.4 bits (80), Expect = 0.010
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 4 PNAG-GPPHPVPQPGYPGCQPLGPYPPPYPPPAP--GIPPVNPLAPGMVGP 51
P AG PP P+P P PL P PPP P GIPP PL + P
Sbjct: 938 PGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPP 988
Score = 35.4 bits (80), Expect = 0.010
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 9 PPHPVPQPGYPGCQPLG----PYPPPYP----PPAPGIPPVNPLAPGMVGPAVI 54
PP P+P G P PL P PPP P PPAP PP+ P G+ P ++
Sbjct: 1186 PPPPLPGVGIPPPPPLPGAGIPPPPPLPGMGIPPAPA-PPLPPPGTGIPPPPLL 1238
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 9 PPHPVPQPGYPGCQPL-GPYPPPYPP-PAPGIPPVNPLAPGMVGP 51
PP P+P G P PL G P PP P GIPP PL + P
Sbjct: 911 PPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPP 955
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPP-PAPGIPPVNPLAPG 47
P +PQP P Q PPP PP P GIPP PL PG
Sbjct: 892 PSTAIPQP--PPLQGTEMLPPPPPPLPGAGIPPPPPL-PG 928
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
PP P P PG PPP P P GI P+ PL + P
Sbjct: 909 PPPPPPLPG-------AGIPPPPPLPGAGILPLPPLPGAGIPP 944
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPP-------PAPGI----PPVNPLAPGMVGPA 52
P A PP P P G P L PP P P P + PP PL G+ G
Sbjct: 1218 PPAPAPPLPPPGTGIPPPPLLPVSGPPLLPQVGSSTLPTPQVCGFLPP--PLPSGLFGLG 1275
Query: 53 VIVDKKMQKKMKKAHKKMHKHQKHHKYHKHGKHSSSSS 90
+ DK +K+ + + M K + H K SS+S
Sbjct: 1276 MNQDKGSRKQPIEPCRPM-KPLYWTRIQLHSKRDSSTS 1312
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPG---IPPVNPLAPG 47
PP P P PG L P PPP G +PP P PG
Sbjct: 877 PPPPPPLPGMT-VPTLPSTAIPQPPPLQGTEMLPPPPPPLPG 917
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 10 PHPVPQPGYPGCQP-LGPYPPPYPPPAPGI 38
P P+P P LG PPP PPP PG+
Sbjct: 858 PPPLPCTESSSSMPGLGMVPPP-PPPLPGM 886
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 39.7 bits (91), Expect = 5e-04
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 8 GPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIP-PVNPLAPGMVG 50
G +P P PGYPG P P PP PP PG P P P P G
Sbjct: 11 GDNYPPPNPGYPG-GPQPPMPPYAQPPYPGAPYPQPPFQPSPYG 53
Score = 39.3 bits (90), Expect = 7e-04
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 4 PNAGGPPHPVPQPGYP------GCQPLGPYP-PPYPPPAPGIPPVNP 43
P G P P PQ GYP G P GPYP P+PP G P V P
Sbjct: 75 PQGGYPQGPYPQEGYPQGPYPQGGYPQGPYPQSPFPPNPYGQPQVFP 121
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 7 GGPPHPVP---QPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAP 46
GGP P+P QP YPG PYP P P+P P P P
Sbjct: 23 GGPQPPMPPYAQPPYPGA----PYPQPPFQPSPYGQPGYPHGP 61
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 10 PHPVPQPGYP--------GCQPLGPYP----PPYPPPAPGIP 39
P P QPGYP G P GPYP P P P G P
Sbjct: 49 PSPYGQPGYPHGPSPYPQGGYPQGPYPQGGYPQGPYPQEGYP 90
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 39.7 bits (91), Expect = 5e-04
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 8 GPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIP-PVNPLAPGMVG 50
G +P P PGYPG P P PP PP PG P P P P G
Sbjct: 11 GDNYPPPNPGYPG-GPQPPMPPYAQPPYPGAPYPQPPFQPSPYG 53
Score = 39.3 bits (90), Expect = 7e-04
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 4 PNAGGPPHPVPQPGYP------GCQPLGPYP-PPYPPPAPGIPPVNP 43
P G P P PQ GYP G P GPYP P+PP G P V P
Sbjct: 75 PQGGYPQGPYPQEGYPQGPYPQGGYPQGPYPQSPFPPNPYGQPQVFP 121
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 7 GGPPHPVP---QPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAP 46
GGP P+P QP YPG PYP P P+P P P P
Sbjct: 23 GGPQPPMPPYAQPPYPGA----PYPQPPFQPSPYGQPGYPHGP 61
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 10 PHPVPQPGYP--------GCQPLGPYP----PPYPPPAPGIP 39
P P QPGYP G P GPYP P P P G P
Sbjct: 49 PSPYGQPGYPHGPSPYPQGGYPQGPYPQGGYPQGPYPQEGYP 90
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 39.7 bits (91), Expect = 5e-04
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 4 PNAGGPPH--PVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAP 46
P A PP P P PGYP P Y P +PPP P +PP + + P
Sbjct: 490 PPASFPPPAIPPPTPGYPPPPPT--YNPNFPPPPPRLPPTHAVPP 532
Score = 38.9 bits (89), Expect = 9e-04
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPP--VNPLAPGMVGP 51
P A GPP +P +P P P PPP PPP PP + P PG P
Sbjct: 462 PPAYGPPAHLPY--HPHVYPPNPPPPPVPPPPASFPPPAIPPPTPGYPPP 509
Score = 38.5 bits (88), Expect = 0.001
Identities = 22/42 (52%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 4 PNAGGPPHPVPQPGYP-GCQPLGPYPPPYPPPAPGIPPVNPL 44
P G PP P P P G QP P PPP PP PG+PPV L
Sbjct: 536 PGLGLPPASYPPPAVPPGGQP--PVPPPIPP--PGMPPVGGL 573
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 4 PNAGGPPHPVPQPGYPGCQPLGPYPPP--------YPPPA---PGIPPVNPLAP 46
P P P P P P + P+PPP YPPPA G PPV P P
Sbjct: 510 PPTYNPNFPPPPPRLPPTHAVPPHPPPGLGLPPASYPPPAVPPGGQPPVPPPIP 563
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPP---YPPPAPGIPPVNPLAPGMVGP 51
PP PVP P P P PPP YPPP P P P P + P
Sbjct: 483 PPPPVPPP--PASFPPPAIPPPTPGYPPPPPTYNPNFPPPPPRLPP 526
Score = 33.5 bits (75), Expect = 0.037
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 9 PPHPVPQPGYPGCQPLGPYP---PPYPPPAPGIPPVNPLAPGM 48
PP P P +P P P PP+PPP G+PP + P +
Sbjct: 508 PPPPTYNPNFPPPPPRLPPTHAVPPHPPPGLGLPPASYPPPAV 550
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 9 PPHPVPQPGYPGCQ---PLGPYPPPYPPPAPGIPPVNPLAPGMVG 50
PP PV P Q P P P PPP P PP P + M G
Sbjct: 387 PPGPVDATDLPKVQIPPPAHPAPVHQPPPLPHRPPPPPPSSYMTG 431
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 8 GPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAV 53
GP + P Y L PY P PP P PPV P PA+
Sbjct: 455 GPSYGALPPAYGPPAHL-PYHPHVYPPNPPPPPVPPPPASFPPPAI 499
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/43 (34%), Positives = 16/43 (37%)
Query: 9 PPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGP 51
P HP P P LG PP P A +P V P P
Sbjct: 367 PAHPPPDRKPPLAAALGEAEPPGPVDATDLPKVQIPPPAHPAP 409
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.132 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,407,819
Number of Sequences: 37866
Number of extensions: 571505
Number of successful extensions: 17181
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 638
Number of HSP's that attempted gapping in prelim test: 5929
Number of HSP's gapped (non-prelim): 7498
length of query: 98
length of database: 18,247,518
effective HSP length: 69
effective length of query: 29
effective length of database: 15,634,764
effective search space: 453408156
effective search space used: 453408156
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.