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Search of human proteins with 5174655
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5174655 reticulon 3 isoform a [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5174655 reticulon 3 isoform a [Homo sapiens] 457 e-129
gi|41393604 reticulon 3 isoform c [Homo sapiens] 445 e-125
gi|41393606 reticulon 3 isoform d [Homo sapiens] 392 e-109
gi|41393608 reticulon 3 isoform b [Homo sapiens] 363 e-101
gi|24431933 reticulon 4 isoform B [Homo sapiens] 252 2e-67
gi|47519490 reticulon 4 isoform D [Homo sapiens] 250 7e-67
gi|47519562 reticulon 4 isoform E [Homo sapiens] 246 2e-65
gi|24431935 reticulon 4 isoform A [Homo sapiens] 246 2e-65
gi|5902016 reticulon 4 isoform C [Homo sapiens] 244 6e-65
gi|45827778 reticulon 1 isoform B [Homo sapiens] 238 4e-63
gi|10863935 reticulon 1 isoform A [Homo sapiens] 238 4e-63
gi|45827776 reticulon 1 isoform C [Homo sapiens] 233 8e-62
gi|5032055 reticulon 2 isoform A [Homo sapiens] 171 5e-43
gi|46255007 reticulon 2 isoform C [Homo sapiens] 171 5e-43
gi|46255005 reticulon 2 isoform B [Homo sapiens] 171 5e-43
gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform... 30 1.8
gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform ... 30 1.8
gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform ... 30 1.8
gi|84993742 tripartite motif-containing 71 [Homo sapiens] 30 2.4
gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens] 30 2.4
gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens] 29 3.1
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom... 29 3.1
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 29 3.1
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 29 3.1
gi|13994287 BTE-binding protein 4 [Homo sapiens] 29 4.0
gi|94536854 thrombospondin, type I, domain containing 4 [Homo sa... 28 5.3
gi|115334682 SNAP25-interacting protein [Homo sapiens] 28 5.3
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens] 28 5.3
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 28 5.3
gi|45827800 prestin isoform b [Homo sapiens] 28 6.9
>gi|5174655 reticulon 3 isoform a [Homo sapiens]
Length = 236
Score = 457 bits (1175), Expect = e-129
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT 60
MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT
Sbjct: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT 60
Query: 61 GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL 120
GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL
Sbjct: 61 GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL 120
Query: 121 DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG 180
DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG
Sbjct: 121 DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG 180
Query: 181 ITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 236
ITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE
Sbjct: 181 ITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 236
>gi|41393604 reticulon 3 isoform c [Homo sapiens]
Length = 255
Score = 445 bits (1145), Expect = e-125
Identities = 236/255 (92%), Positives = 236/255 (92%), Gaps = 19/255 (7%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA------------- 47
MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA
Sbjct: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVS 60
Query: 48 ------VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 101
VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK
Sbjct: 61 LFSTSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 120
Query: 102 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 161
SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS
Sbjct: 121 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 180
Query: 162 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE 221
LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE
Sbjct: 181 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE 240
Query: 222 KIQAKLPGIAKKKAE 236
KIQAKLPGIAKKKAE
Sbjct: 241 KIQAKLPGIAKKKAE 255
>gi|41393606 reticulon 3 isoform d [Homo sapiens]
Length = 241
Score = 392 bits (1007), Expect = e-109
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT 60
MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT
Sbjct: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT 60
Query: 61 GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL 120
GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL
Sbjct: 61 GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL 120
Query: 121 DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG 180
DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG
Sbjct: 121 DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG 180
Query: 181 ITLLILAELLIFSVPIVYEKYK 202
ITLLILAELLIFSVPIVYEKYK
Sbjct: 181 ITLLILAELLIFSVPIVYEKYK 202
>gi|41393608 reticulon 3 isoform b [Homo sapiens]
Length = 1013
Score = 363 bits (931), Expect = e-101
Identities = 189/190 (99%), Positives = 190/190 (100%)
Query: 47 AVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQA 106
+VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQA
Sbjct: 824 SVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQA 883
Query: 107 VQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV 166
VQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV
Sbjct: 884 VQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV 943
Query: 167 FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAK 226
FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAK
Sbjct: 944 FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAK 1003
Query: 227 LPGIAKKKAE 236
LPGIAKKKAE
Sbjct: 1004 LPGIAKKKAE 1013
Score = 99.0 bits (245), Expect = 3e-21
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA 47
MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA
Sbjct: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA 47
>gi|24431933 reticulon 4 isoform B [Homo sapiens]
Length = 373
Score = 252 bits (643), Expect = 2e-67
Identities = 123/215 (57%), Positives = 162/215 (75%), Gaps = 2/215 (0%)
Query: 22 PSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVIS 81
P AP P PA + SS V DL++WRD+KKTG VFG +L +LLSL FS++S
Sbjct: 161 PPAPAPAAPPST-PAAPKRRGSSGSVVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVS 219
Query: 82 VVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVH 141
V +Y+ LALLSVTISFRIYK VIQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H
Sbjct: 220 VTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGH 279
Query: 142 INRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKY 201
+N +K + RLFLV+DLVDSLK AV MW+ TYVGA+FNG+TLLILA + +FSVP++YE++
Sbjct: 280 VNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERH 339
Query: 202 KTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 236
+ QIDHY+G+A K + KIQAK+PG+ K+KAE
Sbjct: 340 QAQIDHYLGLANKNVKDAMAKIQAKIPGL-KRKAE 373
>gi|47519490 reticulon 4 isoform D [Homo sapiens]
Length = 392
Score = 250 bits (639), Expect = 7e-67
Identities = 127/222 (57%), Positives = 166/222 (74%), Gaps = 9/222 (4%)
Query: 22 PSAPGGGGSPG-------ACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSL 74
P+AP GS G A PA SS AV DL++WRD+KKTG VFG +L +LLSL
Sbjct: 173 PAAPKRRGSSGSVDETLFALPAASEPVIRSS-AVVDLLYWRDIKKTGVVFGASLFLLLSL 231
Query: 75 AAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNY 134
FS++SV +Y+ LALLSVTISFRIYK VIQA+QKS+EGHPF+AYL+ ++ +S E Y
Sbjct: 232 TVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKY 291
Query: 135 MNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSV 194
N+A+ H+N +K + RLFLV+DLVDSLK AV MW+ TYVGA+FNG+TLLILA + +FSV
Sbjct: 292 SNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSV 351
Query: 195 PIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 236
P++YE+++ QIDHY+G+A K + KIQAK+PG+ K+KAE
Sbjct: 352 PVIYERHQAQIDHYLGLANKNVKDAMAKIQAKIPGL-KRKAE 392
>gi|47519562 reticulon 4 isoform E [Homo sapiens]
Length = 986
Score = 246 bits (627), Expect = 2e-65
Identities = 120/217 (55%), Positives = 161/217 (74%), Gaps = 1/217 (0%)
Query: 20 AEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSV 79
AE P P+ + S +V DL++WRD+KKTG VFG +L +LLSL FS+
Sbjct: 771 AEKKLPSDTEKEDRSPSAIFSAELSKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSI 830
Query: 80 ISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAM 139
+SV +Y+ LALLSVTISFRIYK VIQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+
Sbjct: 831 VSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSAL 890
Query: 140 VHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYE 199
H+N +K + RLFLV+DLVDSLK AV MW+ TYVGA+FNG+TLLILA + +FSVP++YE
Sbjct: 891 GHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYE 950
Query: 200 KYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 236
+++ QIDHY+G+A K + KIQAK+PG+ K+KAE
Sbjct: 951 RHQAQIDHYLGLANKNVKDAMAKIQAKIPGL-KRKAE 986
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 246 bits (627), Expect = 2e-65
Identities = 120/217 (55%), Positives = 161/217 (74%), Gaps = 1/217 (0%)
Query: 20 AEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSV 79
AE P P+ + S +V DL++WRD+KKTG VFG +L +LLSL FS+
Sbjct: 977 AEKKLPSDTEKEDRSPSAIFSAELSKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSI 1036
Query: 80 ISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAM 139
+SV +Y+ LALLSVTISFRIYK VIQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+
Sbjct: 1037 VSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSAL 1096
Query: 140 VHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYE 199
H+N +K + RLFLV+DLVDSLK AV MW+ TYVGA+FNG+TLLILA + +FSVP++YE
Sbjct: 1097 GHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYE 1156
Query: 200 KYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 236
+++ QIDHY+G+A K + KIQAK+PG+ K+KAE
Sbjct: 1157 RHQAQIDHYLGLANKNVKDAMAKIQAKIPGL-KRKAE 1192
>gi|5902016 reticulon 4 isoform C [Homo sapiens]
Length = 199
Score = 244 bits (622), Expect = 6e-65
Identities = 115/189 (60%), Positives = 153/189 (80%), Gaps = 1/189 (0%)
Query: 48 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107
V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFRIYK VIQA+
Sbjct: 12 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71
Query: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK AV
Sbjct: 72 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131
Query: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 227
MW+ TYVGA+FNG+TLLILA + +FSVP++YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 132 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 191
Query: 228 PGIAKKKAE 236
PG+ K+KAE
Sbjct: 192 PGL-KRKAE 199
>gi|45827778 reticulon 1 isoform B [Homo sapiens]
Length = 356
Score = 238 bits (606), Expect = 4e-63
Identities = 123/223 (55%), Positives = 164/223 (73%), Gaps = 6/223 (2%)
Query: 16 SSFGAEPSAPGGGG--SPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLS 73
SS P+A G G PGA P L + + DL++WRD+K+TG VFG+ L++L S
Sbjct: 138 SSSNQSPAATKGPGPLGPGAPPPLLFLNKQKAI---DLLYWRDIKQTGIVFGSFLLLLFS 194
Query: 74 LAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHN 133
L FSV+SVV+YL LA LS TISFRIYKSV+QAVQK++EGHPFKAYL+++ITLS E
Sbjct: 195 LTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQK 254
Query: 134 YMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFS 193
Y + ++N LK + RLFLV+DLVDSLK AV MWL+TYVGA+FNG+TLL++A + +F+
Sbjct: 255 YTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFT 314
Query: 194 VPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 236
+P+VY K++ QID Y+G+ R ++V KIQAK+PG AK+ AE
Sbjct: 315 LPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPG-AKRHAE 356
>gi|10863935 reticulon 1 isoform A [Homo sapiens]
Length = 776
Score = 238 bits (606), Expect = 4e-63
Identities = 123/223 (55%), Positives = 164/223 (73%), Gaps = 6/223 (2%)
Query: 16 SSFGAEPSAPGGGG--SPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLS 73
SS P+A G G PGA P L + + DL++WRD+K+TG VFG+ L++L S
Sbjct: 558 SSSNQSPAATKGPGPLGPGAPPPLLFLNKQKAI---DLLYWRDIKQTGIVFGSFLLLLFS 614
Query: 74 LAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHN 133
L FSV+SVV+YL LA LS TISFRIYKSV+QAVQK++EGHPFKAYL+++ITLS E
Sbjct: 615 LTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQK 674
Query: 134 YMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFS 193
Y + ++N LK + RLFLV+DLVDSLK AV MWL+TYVGA+FNG+TLL++A + +F+
Sbjct: 675 YTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFT 734
Query: 194 VPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 236
+P+VY K++ QID Y+G+ R ++V KIQAK+PG AK+ AE
Sbjct: 735 LPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPG-AKRHAE 776
>gi|45827776 reticulon 1 isoform C [Homo sapiens]
Length = 208
Score = 233 bits (595), Expect = 8e-62
Identities = 112/187 (59%), Positives = 150/187 (80%), Gaps = 1/187 (0%)
Query: 50 DLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQK 109
DL++WRD+K+TG VFG+ L++L SL FSV+SVV+YL LA LS TISFRIYKSV+QAVQK
Sbjct: 23 DLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQK 82
Query: 110 SEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMW 169
++EGHPFKAYL+++ITLS E Y + ++N LK + RLFLV+DLVDSLK AV MW
Sbjct: 83 TDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMW 142
Query: 170 LMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPG 229
L+TYVGA+FNG+TLL++A + +F++P+VY K++ QID Y+G+ R ++V KIQAK+PG
Sbjct: 143 LLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPG 202
Query: 230 IAKKKAE 236
AK+ AE
Sbjct: 203 -AKRHAE 208
>gi|5032055 reticulon 2 isoform A [Homo sapiens]
Length = 545
Score = 171 bits (433), Expect = 5e-43
Identities = 82/182 (45%), Positives = 125/182 (68%)
Query: 48 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107
V DL++W+D + +G VF ++ LL L FS++SV ++L L LL TIS R+Y+ V+QAV
Sbjct: 345 VADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAV 404
Query: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167
+ + +PF+AYLDVD+TL+ E + + A + FLVEDLVDSLKLA+
Sbjct: 405 HRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLALL 464
Query: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 227
+++T+VGA+FNG+TLLIL + +F++P++Y +++ QID YVG+ +Q I KI+AK+
Sbjct: 465 FYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAKI 524
Query: 228 PG 229
PG
Sbjct: 525 PG 526
>gi|46255007 reticulon 2 isoform C [Homo sapiens]
Length = 205
Score = 171 bits (433), Expect = 5e-43
Identities = 82/182 (45%), Positives = 125/182 (68%)
Query: 48 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107
V DL++W+D + +G VF ++ LL L FS++SV ++L L LL TIS R+Y+ V+QAV
Sbjct: 5 VADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAV 64
Query: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167
+ + +PF+AYLDVD+TL+ E + + A + FLVEDLVDSLKLA+
Sbjct: 65 HRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLALL 124
Query: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 227
+++T+VGA+FNG+TLLIL + +F++P++Y +++ QID YVG+ +Q I KI+AK+
Sbjct: 125 FYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAKI 184
Query: 228 PG 229
PG
Sbjct: 185 PG 186
>gi|46255005 reticulon 2 isoform B [Homo sapiens]
Length = 472
Score = 171 bits (433), Expect = 5e-43
Identities = 82/182 (45%), Positives = 125/182 (68%)
Query: 48 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107
V DL++W+D + +G VF ++ LL L FS++SV ++L L LL TIS R+Y+ V+QAV
Sbjct: 272 VADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAV 331
Query: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167
+ + +PF+AYLDVD+TL+ E + + A + FLVEDLVDSLKLA+
Sbjct: 332 HRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLALL 391
Query: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 227
+++T+VGA+FNG+TLLIL + +F++P++Y +++ QID YVG+ +Q I KI+AK+
Sbjct: 392 FYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAKI 451
Query: 228 PG 229
PG
Sbjct: 452 PG 453
>gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform c
precursor [Homo sapiens]
Length = 899
Score = 30.0 bits (66), Expect = 1.8
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 72 LSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSE 111
LS F +SV+S L + L V +SF IY S ++ +Q S+
Sbjct: 525 LSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQ 564
>gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform b
precursor [Homo sapiens]
Length = 844
Score = 30.0 bits (66), Expect = 1.8
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 72 LSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSE 111
LS F +SV+S L + L V +SF IY S ++ +Q S+
Sbjct: 470 LSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQ 509
>gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform a
precursor [Homo sapiens]
Length = 961
Score = 30.0 bits (66), Expect = 1.8
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 72 LSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSE 111
LS F +SV+S L + L V +SF IY S ++ +Q S+
Sbjct: 587 LSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQ 626
>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
Length = 868
Score = 29.6 bits (65), Expect = 2.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 4 PSAATQSHSISSSSFGAEPSAPGGGGSPGA 33
P+ + + S SSSS S+ GGGG PGA
Sbjct: 22 PAPLSSNSSASSSSSQTSTSSGGGGGGPGA 51
>gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]
Length = 1104
Score = 29.6 bits (65), Expect = 2.4
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 4 PSAATQSHSISSSSFGAEPS------APGGG-GSPGACPALGTKSCSSSC 46
P + + S SS GA P+ APGGG S GAC A + S SSC
Sbjct: 264 PGSGSGSGPGPSSGPGAAPAADKEREAPGGGAASGGACSAASSASGGSSC 313
>gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens]
Length = 422
Score = 29.3 bits (64), Expect = 3.1
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALG 38
M +P Q G + +APG GG PG P G
Sbjct: 1 MQQPQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPG 38
>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
sapiens]
Length = 363
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 4 PSAATQSHSI--SSSSFGAEPSAPGGGGSPGA--CPALGTKSCSS 44
P A+ +SI SSSS G+ PGGGG PG P+ G + SS
Sbjct: 220 PWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSS 264
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 29.3 bits (64), Expect = 3.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 10 SHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSS 45
S ++++++ A P PGG SP + A + S SSS
Sbjct: 846 SAALTAAAVAAPPHCPGGSASPSSSKASSSSSSSSS 881
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 4 PSAATQSHSI--SSSSFGAEPSAPGGGGSPGA--CPALGTKSCSS 44
P A+ +SI SSSS G+ PGGGG PG P+ G + SS
Sbjct: 242 PWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSS 286
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 28.9 bits (63), Expect = 4.0
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 4 PSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKS 41
P AA S +SSS A S+P G +PGA P+ KS
Sbjct: 91 PGAAPGGASPASSSSAA--SSPSSGRAPGAAPSAAAKS 126
>gi|94536854 thrombospondin, type I, domain containing 4 [Homo
sapiens]
Length = 1018
Score = 28.5 bits (62), Expect = 5.3
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 4 PSAATQSHSISS--SSFGAEPSAPGGGGSPGACPALGT-KSCSSSCA 47
P +TQ + ++ GA P GGGG+PG A G +CS SC+
Sbjct: 25 PQPSTQHRKVPQRMAAEGA-PEDDGGGGAPGVWGAWGPWSACSRSCS 70
>gi|115334682 SNAP25-interacting protein [Homo sapiens]
Length = 1183
Score = 28.5 bits (62), Expect = 5.3
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 8 TQSHSISSSSFGAEPSAP--GGGGSPGACPALGTKSCSSS 45
T S I S+ A PSAP GG S GA P G S+S
Sbjct: 596 TPSEKIEGSNGAATPSAPCGSGGRSSGATPVSGPPPPSAS 635
>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
Length = 904
Score = 28.5 bits (62), Expect = 5.3
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 5 SAATQSH-SISSSSFGAEPSAPGGGGSPG-ACPALGTKSCSSSCAVHDLIFW 54
+AA SH ++ S+ P+ P GGG+P A P S S+S A D W
Sbjct: 355 TAAAASHPAVPPSAPDPRPATPQGGGAPRVAAPQTTLSSSSTSAATVDPPAW 406
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 28.5 bits (62), Expect = 5.3
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 AEPSAPGG----GGSPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGT 66
A P APGG GG+PG + S S+S +V ++ K+ G V T
Sbjct: 288 APPGAPGGPACLGGTPGVSATSSSASSSTSSSVAEVGVGAGGKRPGSVSST 338
>gi|45827800 prestin isoform b [Homo sapiens]
Length = 685
Score = 28.1 bits (61), Expect = 6.9
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 163 KLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEK 222
K+ + +WL T+V ++F G+ ++ ++I + ++ Y+TQ Y + + +
Sbjct: 466 KIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVI---YRTQSPSYKVLGKLPETDVYID 522
Query: 223 IQA-----KLPGI 230
I A ++PGI
Sbjct: 523 IDAYEEVKEIPGI 535
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,862,910
Number of Sequences: 37866
Number of extensions: 312437
Number of successful extensions: 2312
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2271
Number of HSP's gapped (non-prelim): 51
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.