Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 13376854
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376854 UBX domain protein 6 [Homo sapiens]
(441 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376854 UBX domain protein 6 [Homo sapiens] 873 0.0
gi|13129078 alveolar soft part sarcoma chromosome region, candid... 70 5e-12
gi|21361517 UBX domain protein 1 [Homo sapiens] 45 2e-04
gi|5901948 FAS-associated factor 1 [Homo sapiens] 44 4e-04
gi|223941798 N-glycanase 1 isoform 2 [Homo sapiens] 37 0.027
gi|21314690 N-glycanase 1 isoform 1 [Homo sapiens] 37 0.027
gi|223941808 N-glycanase 1 isoform 4 [Homo sapiens] 37 0.027
gi|16262452 cingulin [Homo sapiens] 36 0.061
gi|134152708 arginine and glutamate rich 1 [Homo sapiens] 36 0.061
gi|206597556 kelch domain containing 7B [Homo sapiens] 35 0.10
gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo sap... 35 0.14
gi|87299628 biorientation of chromosomes in cell division 1-like... 35 0.18
gi|148746195 trichohyalin [Homo sapiens] 33 0.40
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 33 0.67
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 33 0.67
gi|109637791 transcription factor-like nuclear regulator [Homo s... 33 0.67
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] 33 0.67
gi|38570058 hypothetical protein LOC80129 [Homo sapiens] 32 0.88
gi|50658069 phosphodiesterase 4D interacting protein isoform 2 [... 32 0.88
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 32 0.88
gi|126362971 serine/threonine kinase 10 [Homo sapiens] 32 1.1
gi|109150431 ring finger protein 31 [Homo sapiens] 32 1.5
gi|22035606 mitogen-activated protein kinase kinase kinase kinas... 32 1.5
gi|22035602 mitogen-activated protein kinase kinase kinase kinas... 32 1.5
gi|22035604 mitogen-activated protein kinase kinase kinase kinas... 32 1.5
gi|117606330 RNA (guanine-9-) methyltransferase domain containin... 32 1.5
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 31 2.0
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 31 2.0
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 31 2.0
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 31 2.0
>gi|13376854 UBX domain protein 6 [Homo sapiens]
Length = 441
Score = 873 bits (2255), Expect = 0.0
Identities = 441/441 (100%), Positives = 441/441 (100%)
Query: 1 MKKFFQEFKADIKFKSAGPGQKLKESVGEKAHKEKPNQPAPRPPRQGPTNEAQMAAAAAL 60
MKKFFQEFKADIKFKSAGPGQKLKESVGEKAHKEKPNQPAPRPPRQGPTNEAQMAAAAAL
Sbjct: 1 MKKFFQEFKADIKFKSAGPGQKLKESVGEKAHKEKPNQPAPRPPRQGPTNEAQMAAAAAL 60
Query: 61 ARLEQKQSRAWGPTSQDTIRNQVRKELQAEATVSGSPEAPGTNVVSEPREEGSAHLAVPG 120
ARLEQKQSRAWGPTSQDTIRNQVRKELQAEATVSGSPEAPGTNVVSEPREEGSAHLAVPG
Sbjct: 61 ARLEQKQSRAWGPTSQDTIRNQVRKELQAEATVSGSPEAPGTNVVSEPREEGSAHLAVPG 120
Query: 121 VYFTCPLTGATLRKDQRDACIKEAILLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAK 180
VYFTCPLTGATLRKDQRDACIKEAILLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAK
Sbjct: 121 VYFTCPLTGATLRKDQRDACIKEAILLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAK 180
Query: 181 YLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFY 240
YLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFY
Sbjct: 181 YLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFY 240
Query: 241 VLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEI 300
VLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEI
Sbjct: 241 VLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEI 300
Query: 301 KREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTFYARERLG 360
KREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTFYARERLG
Sbjct: 301 KREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTFYARERLG 360
Query: 361 AVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAVLEDIKA 420
AVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAVLEDIKA
Sbjct: 361 AVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAVLEDIKA 420
Query: 421 AGAEPDSILKPELLSAIEKLL 441
AGAEPDSILKPELLSAIEKLL
Sbjct: 421 AGAEPDSILKPELLSAIEKLL 441
>gi|13129078 alveolar soft part sarcoma chromosome region, candidate
1 [Homo sapiens]
Length = 553
Score = 69.7 bits (169), Expect = 5e-12
Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 22/185 (11%)
Query: 229 PAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSP----LAS 284
P Q+QE E PQ E+ +E+ + EPV DR+ V P A
Sbjct: 291 PQQEQEQERE---------RDPQQ-EQERERPVDREPV----DREPVVCHPDLEERLQAW 336
Query: 285 QFELPGDFFNLTAEEIKRE-QRLRSEAVERL--SVLRTKAMREKEEQRGLRKYNYTLLRV 341
ELP +FF LT ++++R +L+SE +RL + L TKA RE + + L +Y LRV
Sbjct: 337 PAELPDEFFELTVDDVRRRLAQLKSER-KRLEEAPLVTKAFREAQIKEKLERYPKVALRV 395
Query: 342 RLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLV 401
PD +LQG F E +G + FVR L + L F L + + + +D L + L
Sbjct: 396 LFPDRYVLQGFFRPSETVGDLRDFVRSHLGNPELSFYLFITPPKTVLDDHTQTLFQANLF 455
Query: 402 PSALL 406
P+AL+
Sbjct: 456 PAALV 460
>gi|21361517 UBX domain protein 1 [Homo sapiens]
Length = 312
Score = 44.7 bits (104), Expect = 2e-04
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 38/205 (18%)
Query: 229 PAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFEL 288
PA +E+ +E +AQ Q +E+ A E +RQRR A++ L
Sbjct: 84 PALSEEERQEQTKRMLELVAQKQREREEREEREALER-----ERQRRRQGQELSAARQRL 138
Query: 289 PGDFFNLTAEEIKREQRLRSEAVERL--SVLRTKAMREK--------------------- 325
D AEE +RE+ A +R+ + R KA R K
Sbjct: 139 QEDEMRRAAEERRREKAEELAARQRVREKIERDKAERAKKYGGSVGSQPPPVAPEPGPVP 198
Query: 326 ----EEQRGLRKYNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVR----EALQSDWLPF 377
+E R+Y+ ++VRLPDG L TF ARE+L AV +V E L P
Sbjct: 199 SSPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPV 258
Query: 378 ELLASGGQKLSEDENL--ALNECGL 400
+LL+ ++ + ++ L E G+
Sbjct: 259 QLLSGFPRRAFSEADMERPLQELGM 283
>gi|5901948 FAS-associated factor 1 [Homo sapiens]
Length = 650
Score = 43.5 bits (101), Expect = 4e-04
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 25/182 (13%)
Query: 227 LLPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQF 286
+ AQ QED + E ++++R +++ A + + DR +R +A QF
Sbjct: 486 IFTAQQQED-----IKDEDEREARENVKREQDE---AYRLSLEADRAKREAHEREMAEQF 537
Query: 287 ELPGDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDG 346
L E+I++EQ EA+ RLS+ + KEE + LR+R P G
Sbjct: 538 RL---------EQIRKEQEEEREAI-RLSLEQALPPEPKEENAE----PVSKLRIRTPSG 583
Query: 347 CLLQGTFYARERLGAVYGFVREALQSDWLPFELLASGGQK--LSEDENLALNECGLVPSA 404
L+ F A +L V+ FV + W ++LL++ ++ D N +L E L P
Sbjct: 584 EFLERRFLASNKLQIVFDFV-ASKGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQE 642
Query: 405 LL 406
L
Sbjct: 643 TL 644
>gi|223941798 N-glycanase 1 isoform 2 [Homo sapiens]
Length = 636
Score = 37.4 bits (85), Expect = 0.027
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 181 YLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQK 225
Y DNI +P +EKYR I++ N F R+ + G E +GF++
Sbjct: 38 YADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE 82
>gi|21314690 N-glycanase 1 isoform 1 [Homo sapiens]
Length = 654
Score = 37.4 bits (85), Expect = 0.027
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 181 YLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQK 225
Y DNI +P +EKYR I++ N F R+ + G E +GF++
Sbjct: 38 YADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE 82
>gi|223941808 N-glycanase 1 isoform 4 [Homo sapiens]
Length = 558
Score = 37.4 bits (85), Expect = 0.027
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 181 YLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQK 225
Y DNI +P +EKYR I++ N F R+ + G E +GF++
Sbjct: 38 YADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE 82
>gi|16262452 cingulin [Homo sapiens]
Length = 1203
Score = 36.2 bits (82), Expect = 0.061
Identities = 58/214 (27%), Positives = 85/214 (39%), Gaps = 35/214 (16%)
Query: 169 DRVKLG---VDTIAKYLDNIHLHPEEEKYRKIKL--QNKVFQERINCLEGTHE---FFEA 220
DRV G VD + L ++ + KI L QNK + R+ EG +
Sbjct: 990 DRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQ 1049
Query: 221 IGFQKVLLPAQDQEDPEEFYVLSETTLAQPQSLERH-KEQLLAAEPVRAKLDRQRRVFQP 279
+ Q LL + Q + E VL T + LER KE + E R ++ Q+
Sbjct: 1050 LESQNQLLQERLQAEEREKTVLQSTN----RKLERKVKELSIQIEDERQHVNDQK----- 1100
Query: 280 SPLASQFELPGDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLL 339
D +L + +KR+ E +ERL LR KA RE EEQ + + L
Sbjct: 1101 -----------DQLSLRVKALKRQVDEAEEEIERLDGLRKKAQREVEEQHEVNEQ----L 1145
Query: 340 RVRLPDGCLLQGTFYARERLGAVYGFVREALQSD 373
+ R+ L + ++ R A E L SD
Sbjct: 1146 QARIKS--LEKDSWRKASRSAAESALKNEGLSSD 1177
>gi|134152708 arginine and glutamate rich 1 [Homo sapiens]
Length = 273
Score = 36.2 bits (82), Expect = 0.061
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 169 DRVKLGVDTIAKY--LDNIHLHPEEEKYRKIKLQNKVFQERIN---CLEGTHEFFEAIGF 223
DR+ + T++K LD EEEK + + Q K+ Q+ I E T E +
Sbjct: 80 DRIDIFGRTVSKRSSLDEKQKREEEEKKAEFERQRKIRQQEIEEKLIEEETARRVEELVA 139
Query: 224 QKVLLPAQDQEDPEEFYVLSETTLAQP-------QSLERHKEQLLAAEPVRAKLDRQRRV 276
++V + ++D E VL A+ + LER ++ LAA+ R + +R +R
Sbjct: 140 KRVEEELEKRKDEIEREVLRRVEEAKRIMEKQLLEELERQRQAELAAQKAREEEERAKRE 199
Query: 277 FQPSPLASQFELPGDFFNLTAEE---IKREQRLRSEAVERLSVLRTKAMREKEEQR 329
L + AEE I EQR E ER+ + + + ++KEEQ+
Sbjct: 200 ELERILEENNRKIAEAQAKLAEEQLRIVEEQRKIHE--ERMKLEQERQRQQKEEQK 253
>gi|206597556 kelch domain containing 7B [Homo sapiens]
Length = 594
Score = 35.4 bits (80), Expect = 0.10
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 25 ESVGEKAHKEKPNQPAPRPPRQGPTNEAQMAAAAALARLEQ------KQSRAW-GPTSQD 77
E EK+ P PR P Q P AA++ AR Q K+SR P+S+
Sbjct: 85 EGTREKSLDPLPQAAMPRGPAQPPAQRPPGPAASSSARRSQPVPQLRKRSRCEIAPSSEQ 144
Query: 78 TIRNQVRKELQAEATVSGSPEAPGTNVVSEPREE 111
+R + Q EA G A + ++E +EE
Sbjct: 145 EVRPAASGDPQGEAPGEGGSPAGRSGALTEKQEE 178
>gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 479
Score = 35.0 bits (79), Expect = 0.14
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 178 IAKYLDNI--HLHPEEEKYRKIKLQNKVFQERINCLEGT-HEFFEAIGFQKVLLPAQDQE 234
+ K L+++ L E E + + L N+ +ER+ E HE E + Q+ L Q++
Sbjct: 169 LRKELESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLHEQEERLHEQEERLCEQEER 228
Query: 235 DPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFN 294
E+ E L + + R +E+ L + R +R Q L Q +LPG
Sbjct: 229 LCEQ-----EERLREQEERLREQEERLHEQEERLCEQEERLCEQEERLCEQEKLPGQERL 283
Query: 295 LTAEEIKREQRLRSEAVERLSVLRTKAMREKEE 327
L E EQ R E ERL + R + + E EE
Sbjct: 284 LEEVEKLLEQERRQEEQERL-LERERLLDEVEE 315
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 34.7 bits (78), Expect = 0.18
Identities = 79/384 (20%), Positives = 140/384 (36%), Gaps = 55/384 (14%)
Query: 1 MKKFFQEFKADIKFKSAGPGQKLKESVGEKAHKEKPNQPAPRP-PRQGPTNEAQMAAAAA 59
++K EF A + K G G + EK Q P P P N+A M+
Sbjct: 151 VEKAVHEFLATLNHKEEGSGNTAPDD--EKPDTSLITQGVPTPGPSANVANDA-MSILET 207
Query: 60 LARLEQKQSRAWGPTSQDTIRNQVR--KELQAEATVSGSPEAPGTNVVSEPREEGSAHLA 117
+ L Q+ S A T + R K+L ++ T S + T+ +E+ +A
Sbjct: 208 ITSLNQEASAARASTETSNAKTSERASKKLPSQPTTDTSTDKERTSEDMADKEKSTADSG 267
Query: 118 VPGVY----------FTCPLTGAT-----------LRKDQRDACIKEAILLHFSTDPVAA 156
G+ CP+ L KD + ++ +
Sbjct: 268 GEGLETAPKSEEFSDLPCPVEEIKNYTKEHNNLILLNKDVQQESSEQKNKSTDKGEKKPD 327
Query: 157 SIMKIYTFNKDQDRVKLGVDTIAKYLDNIHLHPE----EEKYRKIKLQNKVFQERINCLE 212
S K + +++ + D K D + E E++ +KL ++ + +E
Sbjct: 328 SNEKGERKKEKKEKTEKKFDHSKKSEDTQKVKDEKQAKEKEVESLKLPSEKNSNKAKTVE 387
Query: 213 GTHEFFEAI-----GFQKVLLP-------AQDQEDPEEFYVLS------ETTLAQPQSLE 254
GT E F I G + + + +ED EE V S E T + +
Sbjct: 388 GTKEDFSLIDSDVDGLTDITVSSVHTSDLSSFEEDTEEEVVTSDSMEEGEITSDDEEKNK 447
Query: 255 RHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQRLRSEAVERL 314
++K + ++ K R + P L +++ + +E+ EQR +S A E+
Sbjct: 448 QNKTKTQTSDSSEGKTKSVRHAYVHKPY-----LYSKYYSDSDDELTVEQRRQSIAKEKE 502
Query: 315 S-VLRTKAMREKEEQRGLRKYNYT 337
+LR + REK E++ +K T
Sbjct: 503 ERLLRRQINREKLEEKRKQKAEKT 526
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 33.5 bits (75), Expect = 0.40
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 228 LPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFE 287
L Q++E+ + + SE L + Q E +EQLL E + +L+++RR L + E
Sbjct: 519 LKRQEEEERLQQRLRSEQQLRREQ--EERREQLLKREEEK-RLEQERR---EQRLKREQE 572
Query: 288 LPGDFFNLTAEEIKREQRLRSEAVERLS--VLRTKAMREKEEQR 329
D L EE +R+QRL+ E ERL + R + R ++E+R
Sbjct: 573 ERRDQL-LKREEERRQQRLKREQEERLEQRLKREEVERLEQEER 615
Score = 33.1 bits (74), Expect = 0.52
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 190 EEEKYRKIKLQNKVFQE--------RINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYV 241
EE++ ++ + Q++VFQE R L E + Q+ + QE+ E+
Sbjct: 224 EEKQQQRRERQDRVFQEEEEKEWRKRETVLRKEEEKLQEEEPQR---QRELQEEEEQLRK 280
Query: 242 LSETTLAQPQSLERHKEQLLAAEP-VRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEI 300
L L + + E ++Q L E +R K + +RR Q Q +E
Sbjct: 281 LERQELRRERQEEEQQQQRLRREQQLRRKQEEERREQQEERREQQERRE-------QQEE 333
Query: 301 KREQRLRSEAVERLSVLRTKAMREKEEQR 329
+REQ+LR E ER + RE+EE+R
Sbjct: 334 RREQQLRREQEER---REQQLRREQEEER 359
Score = 30.4 bits (67), Expect = 3.3
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 23/148 (15%)
Query: 187 LHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETT 246
L E+E+ R+ +L+ + +ER ++ L + +E+ E + E
Sbjct: 339 LRREQEERREQQLRREQEEER----------------REQQLRREQEEERREQQLRREQQ 382
Query: 247 LAQPQSLERHKEQLLAAEPVRAK--LDRQRRVFQPSPLASQFEL----PGDFFNLTAEEI 300
L + Q L R ++QL + +R + L R++++ + L + +L + E+
Sbjct: 383 LRREQQLRR-EQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQEEERHEQKHEQE 441
Query: 301 KREQRLRSEAVERLSVLRTKAMREKEEQ 328
+REQRL+ E ER L+ + E+ EQ
Sbjct: 442 RREQRLKREQEERRDWLKREEETERHEQ 469
Score = 29.3 bits (64), Expect = 7.5
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 187 LHPEEEKYRKIKLQNKVFQERINCLEGTHEFF--EAIGFQKVLLPAQDQEDPEEFYVLSE 244
L E+E+ R+ +L+ + +ER+ + + E ++ LL ++++ E+ E
Sbjct: 507 LRREQEERREQRLKRQEEEERLQQRLRSEQQLRREQEERREQLLKREEEKRLEQ--ERRE 564
Query: 245 TTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQ 304
L + Q E ++QLL E R RQ+R+ + + L + +E +REQ
Sbjct: 565 QRLKREQ--EERRDQLLKREEER----RQQRLKREQEERLEQRLKREEVERLEQEERREQ 618
Query: 305 RLRSEAVE---RLSVLRTKAMREKEEQR 329
RL+ E E R +L+++ E+ +Q+
Sbjct: 619 RLKREEPEEERRQQLLKSEEQEERRQQQ 646
Score = 29.3 bits (64), Expect = 7.5
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 254 ERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQRLRSEAVER 313
ER +++L A P+R + +RQ R + +F LP + EE ++ +R R E +
Sbjct: 778 ERGRQRLSARPPLREQRERQLRAEERQQREQRF-LPEE------EEKEQRRRQRREREKE 830
Query: 314 LSVL--------RTKAMREKEEQRGLRK 333
L L R +A + +EE+ GL++
Sbjct: 831 LQFLEEEEQLQRRERAQQLQEEEDGLQE 858
Score = 29.3 bits (64), Expect = 7.5
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 10/145 (6%)
Query: 189 PEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLA 248
PEEE+ + + Q + ++ + LE + Q+ Q QE+ + E +
Sbjct: 812 PEEEEKEQRRRQRREREKELQFLEEEEQL------QRRERAQQLQEEEDGLQEDQERRRS 865
Query: 249 QPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQRLRS 308
Q Q ++ L E R R+ ++ L Q EE++RE+R +
Sbjct: 866 QEQRRDQKWRWQLEEERKR----RRHTLYAKPALQEQLRKEQQLLQEEEEELQREEREKR 921
Query: 309 EAVERLSVLRTKAMREKEEQRGLRK 333
E+ R + ++EE++ LR+
Sbjct: 922 RRQEQERQYREEEQLQQEEEQLLRE 946
Score = 29.3 bits (64), Expect = 7.5
Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 180 KYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEF 239
+Y L EEE+ + + + + QER E + E + ++ L +++E
Sbjct: 1019 QYRKKDELQQEEEQLLREEREKRRLQER----ERQYREEEELQQEEEQLLGEERETRRRQ 1074
Query: 240 YVLSETTLAQPQSLERHKEQLLAAEP-VRAKLDRQRRVFQPSPLASQFELPGDFFNLTAE 298
+ E + + L++ +EQLL EP R + +R+R+ + L + E
Sbjct: 1075 EL--ERQYRKEEELQQEEEQLLREEPEKRRRQERERQCREEEELQQE-----------EE 1121
Query: 299 EIKREQRLRSEAVERLSVLRTKAMREKEEQRGLRK 333
++ RE+R + E R + ++EE++ LR+
Sbjct: 1122 QLLREEREKRRRQELERQYREEEEVQQEEEQLLRE 1156
Score = 28.9 bits (63), Expect = 9.7
Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 21/157 (13%)
Query: 180 KYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEF 239
+Y L EEE+ + + + + QER E + +++L +++ +E
Sbjct: 1079 QYRKEEELQQEEEQLLREEPEKRRRQERERQCREEEELQQEE--EQLLREEREKRRRQEL 1136
Query: 240 YVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEE 299
E + + +++ +EQLL EP + + R ++ Q E
Sbjct: 1137 ----ERQYREEEEVQQEEEQLLREEPEKRRRQELERQYREEEELQQEE------------ 1180
Query: 300 IKREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNY 336
EQ LR E +R + E+E QR RK Y
Sbjct: 1181 ---EQLLREEQEKRRQERERQYREEEELQRQKRKQRY 1214
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 32.7 bits (73), Expect = 0.67
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 19 PGQKLKESVGEKAHKEKPNQPAPRPPRQGPTNEA-----QMAAAAALARLEQKQSRAWGP 73
P K +S G+ + QP PRPP QG +A Q + + + RL + + P
Sbjct: 411 PQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSP 470
Query: 74 TSQDTIRNQVRKELQAEATVSGS----PEAPGTNVVSEPR 109
S + + Q SGS PG + S+PR
Sbjct: 471 QSGSPQQQRSPGSPQLSRASSGSSPNQASKPGATLASQPR 510
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 32.7 bits (73), Expect = 0.67
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 19 PGQKLKESVGEKAHKEKPNQPAPRPPRQGPTNEA-----QMAAAAALARLEQKQSRAWGP 73
P K +S G+ + QP PRPP QG +A Q + + + RL + + P
Sbjct: 412 PQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSP 471
Query: 74 TSQDTIRNQVRKELQAEATVSGS----PEAPGTNVVSEPR 109
S + + Q SGS PG + S+PR
Sbjct: 472 QSGSPQQQRSPGSPQLSRASSGSSPNQASKPGATLASQPR 511
>gi|109637791 transcription factor-like nuclear regulator [Homo
sapiens]
Length = 2624
Score = 32.7 bits (73), Expect = 0.67
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 206 ERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSE------TTLAQPQSLERHKEQ 259
E I+ E + E G +++ + ++ PEE + E TT + S E+ +E
Sbjct: 1133 EVIDATEEIDKDLEETGRREI---SPEENGPEEVKPVDEMETDLKTTGREGSSREKTREV 1189
Query: 260 LLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQRLRSEAVERLSVLRT 319
+ AAE + L+ R P + P +EI+ E R + + S +R
Sbjct: 1190 IDAAEVIETDLEETEREISPQENGPEEVKPVGKMETDLKEIREEISQREKVLAEFSAIRE 1249
Query: 320 KAMREKE 326
K + KE
Sbjct: 1250 KEIDLKE 1256
>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
Length = 5120
Score = 32.7 bits (73), Expect = 0.67
Identities = 42/167 (25%), Positives = 63/167 (37%), Gaps = 11/167 (6%)
Query: 161 IYTFNKDQDRVKLGVDTIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEA 220
IY N QD + AK H + K +LQN + +E + L +
Sbjct: 2260 IYILNMAQDYAAMKAQEKAKKEQEERKHKGALEKEKERLQN-MDEEEYDALTEEEKLTFD 2318
Query: 221 IGFQKVLLPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPS 280
G Q+ L + +E + E L Q LER KE+ R K +Q + +
Sbjct: 2319 RGIQQALRERKKREQERLAKEMQEKKLQQ--ELERQKEEDELKR--RVKKGKQGPIKEEP 2374
Query: 281 PLASQFELPGDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMREKEE 327
P+ LT ++K E +ER +R + M EKEE
Sbjct: 2375 PMKKSQAANKQVPPLTKVDVKME------TIERKISVREQTMSEKEE 2415
>gi|38570058 hypothetical protein LOC80129 [Homo sapiens]
Length = 715
Score = 32.3 bits (72), Expect = 0.88
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 193 KYRKIKLQNKVFQERINCLEGT---HEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLAQ 249
K R ++ +N+ + +I LE T HE EA ++ ++ + + E+ S T
Sbjct: 196 KLRDLRKENEFVKGQIVILEETINVHEM-EAKASRETIMRLASEVNREQKKAASCT---- 250
Query: 250 PQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQRLRSE 309
+ E+ + LL+A + L+R+ ++FQ LA Q ++ + +E+ ++ SE
Sbjct: 251 -EEKEKLNQDLLSAVEAKEALEREVKIFQERLLAGQ-----QVWDASKQEVSLLKKSSSE 304
Query: 310 AVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRL 343
+ L + + + R+ LLR RL
Sbjct: 305 LEKSLKASQDAVTTSQSQYFSFREKIAALLRGRL 338
>gi|50658069 phosphodiesterase 4D interacting protein isoform 2
[Homo sapiens]
Length = 969
Score = 32.3 bits (72), Expect = 0.88
Identities = 40/208 (19%), Positives = 88/208 (42%), Gaps = 21/208 (10%)
Query: 146 LLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAKY-LDNIHLHPEEEKYRKIKLQNKVF 204
LLH +P + + + Q ++ TI + + + HL +EK ++ + NK+
Sbjct: 199 LLHLLEEPTSMEVQPMTEELLKQQKLNSHETTITQQSVSDSHLAELQEKIQQTEATNKIL 258
Query: 205 QERIN--------CLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVL--SETTLAQPQSLE 254
QE++N E + + I K L ++++E E + V+ T+A+ + +
Sbjct: 259 QEKLNEMSYELKCAQESSQKQDGTIQNLKETLKSRERETEELYQVIEGQNDTMAKLREM- 317
Query: 255 RHKEQLLAAEPVRAKLDRQRRV----FQPSPLASQFELPGDFFNLTAEEIKREQRLRSEA 310
H+ QL Q++V Q + SQ E+ +++++R ++A
Sbjct: 318 LHQSQLGQLHSSEGTSPAQQQVALLDLQSALFCSQLEI-----QKLQRVVRQKERQLADA 372
Query: 311 VERLSVLRTKAMREKEEQRGLRKYNYTL 338
+ + + A ++++ K+N L
Sbjct: 373 KQCVQFVEAAAHESEQQKEASWKHNQEL 400
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1
[Homo sapiens]
Length = 2346
Score = 32.3 bits (72), Expect = 0.88
Identities = 40/208 (19%), Positives = 88/208 (42%), Gaps = 21/208 (10%)
Query: 146 LLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAKY-LDNIHLHPEEEKYRKIKLQNKVF 204
LLH +P + + + Q ++ TI + + + HL +EK ++ + NK+
Sbjct: 199 LLHLLEEPTSMEVQPMTEELLKQQKLNSHETTITQQSVSDSHLAELQEKIQQTEATNKIL 258
Query: 205 QERIN--------CLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVL--SETTLAQPQSLE 254
QE++N E + + I K L ++++E E + V+ T+A+ + +
Sbjct: 259 QEKLNEMSYELKCAQESSQKQDGTIQNLKETLKSRERETEELYQVIEGQNDTMAKLREM- 317
Query: 255 RHKEQLLAAEPVRAKLDRQRRV----FQPSPLASQFELPGDFFNLTAEEIKREQRLRSEA 310
H+ QL Q++V Q + SQ E+ +++++R ++A
Sbjct: 318 LHQSQLGQLHSSEGTSPAQQQVALLDLQSALFCSQLEI-----QKLQRVVRQKERQLADA 372
Query: 311 VERLSVLRTKAMREKEEQRGLRKYNYTL 338
+ + + A ++++ K+N L
Sbjct: 373 KQCVQFVEAAAHESEQQKEASWKHNQEL 400
>gi|126362971 serine/threonine kinase 10 [Homo sapiens]
Length = 968
Score = 32.0 bits (71), Expect = 1.1
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 230 AQDQEDPEEFYVLSETTLAQPQSL--ERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFE 287
++D++ EE L L + + L E H+ Q + +L++ + F+ A +
Sbjct: 549 SEDEKKDEEMRFLRRQELRELRLLQKEEHRNQTQLSNKHELQLEQMHKRFEQEINAKK-- 606
Query: 288 LPGDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQRGLR 332
FF+ E ++R+Q+ + E +E + A+R +EE R +R
Sbjct: 607 ---KFFDTELENLERQQKQQVEKME-----QDHAVRRREEARRIR 643
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 31.6 bits (70), Expect = 1.5
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
Query: 175 VDTIAKYLDNIHLHPEEEKY-RKIKLQNKVFQERINCLEGTHEFFEAIGFQKV----LLP 229
++ + KY N+ L P+ +Y R +K N VF+ ++ ++G + G+ + L
Sbjct: 76 LNILEKYGRNL-LSPQRPRYWRGVKFNNPVFRSTVDAVQGGRDVLRLYGYTEEQPDGLSF 134
Query: 230 AQDQEDPEEFYV----------------LSETTLAQPQSLERHKEQLLAAEPVR-AKLDR 272
+ QE+P+E V L + T + Q+LE+ E + + ++ ++ D
Sbjct: 135 PEGQEEPDEHQVATVTLEVLLLRTELSLLLQNTHPRQQALEQLLEDKVEDDMLQLSEFDP 194
Query: 273 QRRVFQPSPLASQFELPG 290
R P PL + +PG
Sbjct: 195 LLREIAPGPLTTP-SVPG 211
>gi|22035606 mitogen-activated protein kinase kinase kinase kinase 4
isoform 3 [Homo sapiens]
Length = 1212
Score = 31.6 bits (70), Expect = 1.5
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 233 QEDPEEFYVLSETTLAQPQSL---ERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELP 289
QE+ E L L Q Q L E +K QLLA +RQ+R+ Q + E
Sbjct: 361 QENKERSEALRRQQLLQEQQLREQEEYKRQLLA--------ERQKRIEQQKEQRRRLEEQ 412
Query: 290 GDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQR 329
+ +REQR R + +R + +E+EE+R
Sbjct: 413 QRREREARRQQEREQRRREQEEKRRLEELERRRKEEEERR 452
>gi|22035602 mitogen-activated protein kinase kinase kinase kinase 4
isoform 1 [Homo sapiens]
Length = 1166
Score = 31.6 bits (70), Expect = 1.5
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 233 QEDPEEFYVLSETTLAQPQSL---ERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELP 289
QE+ E L L Q Q L E +K QLLA +RQ+R+ Q + E
Sbjct: 361 QENKERSEALRRQQLLQEQQLREQEEYKRQLLA--------ERQKRIEQQKEQRRRLEEQ 412
Query: 290 GDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQR 329
+ +REQR R + +R + +E+EE+R
Sbjct: 413 QRREREARRQQEREQRRREQEEKRRLEELERRRKEEEERR 452
>gi|22035604 mitogen-activated protein kinase kinase kinase kinase 4
isoform 2 [Homo sapiens]
Length = 1320
Score = 31.6 bits (70), Expect = 1.5
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 233 QEDPEEFYVLSETTLAQPQSL---ERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELP 289
QE+ E L L Q Q L E +K QLLA +RQ+R+ Q + E
Sbjct: 361 QENKERSEALRRQQLLQEQQLREQEEYKRQLLA--------ERQKRIEQQKEQRRRLEEQ 412
Query: 290 GDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQR 329
+ +REQR R + +R + +E+EE+R
Sbjct: 413 QRREREARRQQEREQRRREQEEKRRLEELERRRKEEEERR 452
>gi|117606330 RNA (guanine-9-) methyltransferase domain containing 3
[Homo sapiens]
Length = 316
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 198 KLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLAQP--QSLER 255
K+++ V Q + LE T E GFQ + + A+ + E T Q +R
Sbjct: 11 KVESPVLQGQEGILEETGEDGLPEGFQLLQIDAEGECQEGEILATGSTAWCSKNVQRKQR 70
Query: 256 HKEQLLAAEPVRAKLDRQRR 275
H E+++AA+ + K +++RR
Sbjct: 71 HWEKIVAAKKSKRKQEKERR 90
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 31.2 bits (69), Expect = 2.0
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 34 EKPNQPA---PRPPRQGPTNEAQMAAAAALARLE---QKQSRAWGPTSQDTIRNQVRKEL 87
E P PA PR +QGP E + A L + K +AW P+S+ T ++ R E
Sbjct: 691 ELPRGPAGLGPRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEE 750
Query: 88 QAEAT 92
A+ +
Sbjct: 751 DADGS 755
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 31.2 bits (69), Expect = 2.0
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 34 EKPNQPA---PRPPRQGPTNEAQMAAAAALARLE---QKQSRAWGPTSQDTIRNQVRKEL 87
E P PA PR +QGP E + A L + K +AW P+S+ T ++ R E
Sbjct: 604 ELPRGPAGLGPRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEE 663
Query: 88 QAEAT 92
A+ +
Sbjct: 664 DADGS 668
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 31.2 bits (69), Expect = 2.0
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 34 EKPNQPA---PRPPRQGPTNEAQMAAAAALARLE---QKQSRAWGPTSQDTIRNQVRKEL 87
E P PA PR +QGP E + A L + K +AW P+S+ T ++ R E
Sbjct: 527 ELPRGPAGLGPRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEE 586
Query: 88 QAEAT 92
A+ +
Sbjct: 587 DADGS 591
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 31.2 bits (69), Expect = 2.0
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 34 EKPNQPA---PRPPRQGPTNEAQMAAAAALARLE---QKQSRAWGPTSQDTIRNQVRKEL 87
E P PA PR +QGP E + A L + K +AW P+S+ T ++ R E
Sbjct: 691 ELPRGPAGLGPRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEE 750
Query: 88 QAEAT 92
A+ +
Sbjct: 751 DADGS 755
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,680,406
Number of Sequences: 37866
Number of extensions: 827849
Number of successful extensions: 4372
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 4228
Number of HSP's gapped (non-prelim): 249
length of query: 441
length of database: 18,247,518
effective HSP length: 105
effective length of query: 336
effective length of database: 14,271,588
effective search space: 4795253568
effective search space used: 4795253568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.