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Search of human proteins with 13376717
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376717 OPA3 protein isoform b [Homo sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376717 OPA3 protein isoform b [Homo sapiens] 358 2e-99
gi|156151427 OPA3 protein isoform a [Homo sapiens] 263 5e-71
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens] 33 0.17
gi|33946313 ninein isoform 4 [Homo sapiens] 32 0.22
gi|33946321 ninein isoform 5 [Homo sapiens] 32 0.22
gi|148536871 ninein isoform 1 [Homo sapiens] 32 0.22
gi|148536869 ninein isoform 2 [Homo sapiens] 32 0.22
gi|191252814 RIMS binding protein 3B [Homo sapiens] 32 0.29
gi|191252806 RIMS binding protein 3C [Homo sapiens] 32 0.29
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 32 0.29
gi|20149533 Fc fragment of IgE, low affinity II, receptor for (C... 32 0.38
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 30 1.1
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 30 1.4
gi|92091575 coiled-coil domain containing 57 [Homo sapiens] 29 1.9
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 28 3.2
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 28 3.2
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 28 3.2
gi|5901948 FAS-associated factor 1 [Homo sapiens] 28 3.2
gi|50658071 phosphodiesterase 4D interacting protein isoform 5 [... 28 3.2
gi|48375167 microtubule-associated protein 6 isoform 2 [Homo sap... 28 3.2
gi|48375173 microtubule-associated protein 6 isoform 1 [Homo sap... 28 3.2
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 28 4.2
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 28 4.2
gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens] 28 4.2
gi|239757898 PREDICTED: similar to testis expressed sequence 13A... 28 5.5
gi|239752412 PREDICTED: similar to testis expressed sequence 13A... 28 5.5
gi|169216868 PREDICTED: similar to testis expressed sequence 13A... 28 5.5
gi|91208420 bassoon protein [Homo sapiens] 28 5.5
gi|38348296 C-type lectin domain family 4, member G [Homo sapiens] 28 5.5
gi|32130516 serologically defined colon cancer antigen 1 [Homo s... 28 5.5
>gi|13376717 OPA3 protein isoform b [Homo sapiens]
Length = 179
Score = 358 bits (918), Expect = 2e-99
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRI 60
MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRI
Sbjct: 1 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRI 60
Query: 61 MGFRGTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWN 120
MGFRGTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWN
Sbjct: 61 MGFRGTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWN 120
Query: 121 ALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLCNPGRSASHAVPASKK 179
ALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLCNPGRSASHAVPASKK
Sbjct: 121 ALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLCNPGRSASHAVPASKK 179
>gi|156151427 OPA3 protein isoform a [Homo sapiens]
Length = 180
Score = 263 bits (673), Expect = 5e-71
Identities = 139/180 (77%), Positives = 145/180 (80%), Gaps = 1/180 (0%)
Query: 1 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRI 60
MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHW+EMRTKMRI
Sbjct: 1 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWLEMRTKMRI 60
Query: 61 MGFRGTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWN 120
MGF IKPLNE AAAELGAELLGE IFI CL+LEYWRHQ QQR KE+E+R A
Sbjct: 61 MGFNAAAIKPLNEGAAAELGAELLGEGIIFITACSCLMLEYWRHQLQQRRKEKERRVARE 120
Query: 121 ALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLC-NPGRSASHAVPASKK 179
ALR EVGHL LALE LQAQVQA Q ALEELR +LQEVRA LC A PAS+K
Sbjct: 121 ALRGEVGHLGLALEELQAQVQATSTQLALEELRAQLQEVRAHLCLRDPPPAPPVAPASEK 180
>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
Length = 3639
Score = 32.7 bits (73), Expect = 0.17
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 109 RHKEEEQRAAWNALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQL 163
RH+++E +W LR AL+AL QA Q L+EL Q +RAQ+
Sbjct: 2407 RHRQQEVAESWWQLRSRAQKRREALDALH---QAQKLQAMLQELLVSAQRLRAQM 2458
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 32.3 bits (72), Expect = 0.22
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 27/94 (28%)
Query: 66 TVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWNALRDE 125
TVI+PL+EEA I G C E+W+ Q + ++ E Q WN D+
Sbjct: 130 TVIEPLDEEARPS-----------HIPAGDCS--EHWKTQRSEEYEAEGQLRFWNP--DD 174
Query: 126 VGHLALALEALQAQVQAAPPQGALEELRTELQEV 159
+ +Q ++PPQ +EE +LQEV
Sbjct: 175 LN---------ASQSGSSPPQDWIEE---KLQEV 196
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 32.3 bits (72), Expect = 0.22
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 27/94 (28%)
Query: 66 TVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWNALRDE 125
TVI+PL+EEA I G C E+W+ Q + ++ E Q WN D+
Sbjct: 124 TVIEPLDEEARPS-----------HIPAGDCS--EHWKTQRSEEYEAEGQLRFWNP--DD 168
Query: 126 VGHLALALEALQAQVQAAPPQGALEELRTELQEV 159
+ +Q ++PPQ +EE +LQEV
Sbjct: 169 LN---------ASQSGSSPPQDWIEE---KLQEV 190
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 32.3 bits (72), Expect = 0.22
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 27/94 (28%)
Query: 66 TVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWNALRDE 125
TVI+PL+EEA I G C E+W+ Q + ++ E Q WN D+
Sbjct: 124 TVIEPLDEEARPS-----------HIPAGDCS--EHWKTQRSEEYEAEGQLRFWNP--DD 168
Query: 126 VGHLALALEALQAQVQAAPPQGALEELRTELQEV 159
+ +Q ++PPQ +EE +LQEV
Sbjct: 169 LN---------ASQSGSSPPQDWIEE---KLQEV 190
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 32.3 bits (72), Expect = 0.22
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 27/94 (28%)
Query: 66 TVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWNALRDE 125
TVI+PL+EEA I G C E+W+ Q + ++ E Q WN D+
Sbjct: 124 TVIEPLDEEARPS-----------HIPAGDCS--EHWKTQRSEEYEAEGQLRFWNP--DD 168
Query: 126 VGHLALALEALQAQVQAAPPQGALEELRTELQEV 159
+ +Q ++PPQ +EE +LQEV
Sbjct: 169 LN---------ASQSGSSPPQDWIEE---KLQEV 190
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 32.0 bits (71), Expect = 0.29
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 53 EMRTKMRIMGFRGTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKE 112
+ R + + +G + + EEA +L A LL A + G W + + + E
Sbjct: 579 QRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSE 638
Query: 113 E--------EQRAAWNALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLC 164
++R A + +++ A + Q Q+Q PQ AL +L +E++A C
Sbjct: 639 VRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQR-DPQKALCDLHPSWKEIQALQC 697
Query: 165 NPG 167
PG
Sbjct: 698 RPG 700
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 32.0 bits (71), Expect = 0.29
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 53 EMRTKMRIMGFRGTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKE 112
+ R + + +G + + EEA +L A LL A + G W + + + E
Sbjct: 579 QRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSE 638
Query: 113 E--------EQRAAWNALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLC 164
++R A + +++ A + Q Q+Q PQ AL +L +E++A C
Sbjct: 639 VRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQR-DPQKALCDLHPSWKEIQALQC 697
Query: 165 NPG 167
PG
Sbjct: 698 RPG 700
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 32.0 bits (71), Expect = 0.29
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 53 EMRTKMRIMGFRGTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKE 112
+ R + + +G + + EEA +L A LL A + G W + + + E
Sbjct: 579 QRRRECQELGAQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSE 638
Query: 113 E--------EQRAAWNALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLC 164
++R A + +++ A + Q Q+Q PQ AL +L +E++A C
Sbjct: 639 VRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQR-DPQKALCDLHPSWKEIQALQC 697
Query: 165 NPG 167
PG
Sbjct: 698 RPG 700
>gi|20149533 Fc fragment of IgE, low affinity II, receptor for
(CD23A) [Homo sapiens]
Length = 321
Score = 31.6 bits (70), Expect = 0.38
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 83 LLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWNALRDEVGHLALALEALQAQVQA 142
LLG T + G +L W Q K+ E+RAA N V ++ LE+ A
Sbjct: 26 LLGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERAARN-----VSQVSKNLESHHGDQMA 80
Query: 143 APPQGA-----LEELRTELQEVRAQ 162
Q LEELR E Q +++Q
Sbjct: 81 QKSQSTQISQELEELRAEQQRLKSQ 105
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 109 RHKEEEQRAAWNALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLCNPGR 168
++ EE RA A E L+LA +A Q A + ++ RTE++++ + + G+
Sbjct: 1459 KYAEERDRAEAEAREKETKALSLARALEEAMEQKAELERLNKQFRTEMEDLMSSKDDVGK 1518
Query: 169 SASHAVPASKK 179
S H + SK+
Sbjct: 1519 SV-HELEKSKR 1528
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 29.6 bits (65), Expect = 1.4
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 103 RHQAQQRHKEEEQRAA------WNALRDEVGHLALALEALQAQVQAAPPQGALEELRTEL 156
+ +QQR +EE +AA W LR ++ L +E L+ + + Q +E++ EL
Sbjct: 503 QRSSQQRENDEEMKAAKEKLKYWQRLRHDLERARLLIELLRKREKLKREQVKVEQVAMEL 562
Query: 157 Q 157
+
Sbjct: 563 R 563
>gi|92091575 coiled-coil domain containing 57 [Homo sapiens]
Length = 915
Score = 29.3 bits (64), Expect = 1.9
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 106 AQQRHKEEEQRAAWNALRDEVGHL--ALALEALQAQVQAAPPQGALEELRTELQEVRA 161
AQ R EE +RA + L+ E L ALA EA + + Q A +E R EL+ V +
Sbjct: 79 AQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHS 136
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 28.5 bits (62), Expect = 3.2
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 68 IKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRH-QAQQRHKEEEQRAAWNALRDEV 126
+ L +E A A+L E T+ L ++ R Q + EE +R LRD
Sbjct: 1573 VTELEDELTAAEDAKLRLEVTV-----QALKTQHERDLQGRDEAGEERRRQLAKQLRDA- 1626
Query: 127 GHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLCNPGRSASHAVPASKK 179
+E + + Q A ++L EL+E++AQ+ + G+ AV +K
Sbjct: 1627 -----EVERDEERKQRTLAVAARKKLEGELEELKAQMASAGQGKEEAVKQLRK 1674
Score = 28.1 bits (61), Expect = 4.2
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 105 QAQQRHKEEEQRAAWNALRDEVGHLALALEAL-QAQVQAAPPQGALEE---LRTELQEVR 160
+AQ KEEE +AA DE G A L++L +AQ A Q LE RT+ ++ R
Sbjct: 1107 RAQLGRKEEELQAALARAEDEGGARAQLLKSLREAQAALAEAQEDLESERVARTKAEKQR 1166
Query: 161 AQL 163
L
Sbjct: 1167 RDL 1169
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 28.5 bits (62), Expect = 3.2
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 68 IKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRH-QAQQRHKEEEQRAAWNALRDEV 126
+ L +E A A+L E T+ L ++ R Q + EE +R LRD
Sbjct: 1565 VTELEDELTAAEDAKLRLEVTV-----QALKTQHERDLQGRDEAGEERRRQLAKQLRDA- 1618
Query: 127 GHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLCNPGRSASHAVPASKK 179
+E + + Q A ++L EL+E++AQ+ + G+ AV +K
Sbjct: 1619 -----EVERDEERKQRTLAVAARKKLEGELEELKAQMASAGQGKEEAVKQLRK 1666
Score = 28.1 bits (61), Expect = 4.2
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 105 QAQQRHKEEEQRAAWNALRDEVGHLALALEAL-QAQVQAAPPQGALEE---LRTELQEVR 160
+AQ KEEE +AA DE G A L++L +AQ A Q LE RT+ ++ R
Sbjct: 1099 RAQLGRKEEELQAALARAEDEGGARAQLLKSLREAQAALAEAQEDLESERVARTKAEKQR 1158
Query: 161 AQL 163
L
Sbjct: 1159 RDL 1161
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 28.5 bits (62), Expect = 3.2
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 68 IKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRH-QAQQRHKEEEQRAAWNALRDEV 126
+ L +E A A+L E T+ L ++ R Q + EE +R LRD
Sbjct: 1606 VTELEDELTAAEDAKLRLEVTV-----QALKTQHERDLQGRDEAGEERRRQLAKQLRDA- 1659
Query: 127 GHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLCNPGRSASHAVPASKK 179
+E + + Q A ++L EL+E++AQ+ + G+ AV +K
Sbjct: 1660 -----EVERDEERKQRTLAVAARKKLEGELEELKAQMASAGQGKEEAVKQLRK 1707
Score = 28.1 bits (61), Expect = 4.2
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 105 QAQQRHKEEEQRAAWNALRDEVGHLALALEAL-QAQVQAAPPQGALEE---LRTELQEVR 160
+AQ KEEE +AA DE G A L++L +AQ A Q LE RT+ ++ R
Sbjct: 1140 RAQLGRKEEELQAALARAEDEGGARAQLLKSLREAQAALAEAQEDLESERVARTKAEKQR 1199
Query: 161 AQL 163
L
Sbjct: 1200 RDL 1202
>gi|5901948 FAS-associated factor 1 [Homo sapiens]
Length = 650
Score = 28.5 bits (62), Expect = 3.2
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 99 LEYWRHQAQQRHKEEEQRAAW-NALRDEVGHLALALEALQAQVQA----APPQGALEELR 153
+E + Q Q+ K+E++R A N R++ L+LEA +A+ +A Q LE++R
Sbjct: 484 MEIFTAQQQEDIKDEDEREARENVKREQDEAYRLSLEADRAKREAHEREMAEQFRLEQIR 543
Query: 154 TELQEVR-------AQLCNPGRSASHAVPASK 178
E +E R Q P +A P SK
Sbjct: 544 KEQEEEREAIRLSLEQALPPEPKEENAEPVSK 575
>gi|50658071 phosphodiesterase 4D interacting protein isoform 5
[Homo sapiens]
Length = 1132
Score = 28.5 bits (62), Expect = 3.2
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 132 ALEALQAQVQAAPPQGALEELRTELQEV-RAQLCNPGRSASH 172
++E+L A VQA+PPQ EE +E+ + C+ ++ H
Sbjct: 241 SVESLDASVQASPPQQKDEETERSAKELGKCDCCSDDQAPQH 282
>gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
Length = 439
Score = 28.5 bits (62), Expect = 3.2
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 106 AQQRHKEEEQRAAWNALRDE-VGHLALALEALQAQVQAAPPQ-----GALEELRTELQE 158
A +R + AW R E +GH L A QAQVQA P+ A + L +++E
Sbjct: 233 ADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIRE 291
>gi|48375173 microtubule-associated protein 6 isoform 1 [Homo
sapiens]
Length = 813
Score = 28.5 bits (62), Expect = 3.2
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 106 AQQRHKEEEQRAAWNALRDE-VGHLALALEALQAQVQAAPPQ-----GALEELRTELQE 158
A +R + AW R E +GH L A QAQVQA P+ A + L +++E
Sbjct: 233 ADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIRE 291
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 28.1 bits (61), Expect = 4.2
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 53 EMRTKMRIMGFRGTVIKPLNEE----------AAAELGAELLGEATIFIVGGGCLVLEYW 102
E+ ++ GF GT I P NEE AA E E + E + + E
Sbjct: 1820 ELSQRLVRSGFAGTEIDPENEELMLNISSRLQAAVEKLLEAISETSSQLEHAKVTQTELM 1879
Query: 103 RHQAQQRHKEEEQRAAWNALRDEVGHLALALEALQAQVQAA 143
R +Q+ + E LR+ + + A E L ++ A
Sbjct: 1880 RESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKA 1920
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 28.1 bits (61), Expect = 4.2
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 53 EMRTKMRIMGFRGTVIKPLNEE----------AAAELGAELLGEATIFIVGGGCLVLEYW 102
E+ ++ GF GT I P NEE AA E E + E + + E
Sbjct: 1820 ELSQRLVRSGFAGTEIDPENEELMLNISSRLQAAVEKLLEAISETSSQLEHAKVTQTELM 1879
Query: 103 RHQAQQRHKEEEQRAAWNALRDEVGHLALALEALQAQVQAA 143
R +Q+ + E LR+ + + A E L ++ A
Sbjct: 1880 RESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKA 1920
>gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]
Length = 1080
Score = 28.1 bits (61), Expect = 4.2
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 103 RHQAQQRHKEEEQRAAWNALRDEVGHL--ALALEALQAQVQAAPPQGALEELRTELQEVR 160
R +A+QR ++ ++ W AL+ + L +A E + QAA + LEELR +L+E
Sbjct: 768 RERARQRFQQHLEQEQW-ALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESS 826
Query: 161 AQL 163
+ L
Sbjct: 827 SAL 829
>gi|239757898 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 652
Score = 27.7 bits (60), Expect = 5.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 108 QRHKEEEQRAAWNALRDEVGHLALALEALQAQVQAAPPQGALEELRTE 155
QRH EE Q +W AL ++ L L E Q+ A Q AL++ E
Sbjct: 94 QRHAEERQATSW-ALTSQLQQLRLEHEVAATQLHLA--QAALQQALNE 138
>gi|239752412 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 652
Score = 27.7 bits (60), Expect = 5.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 108 QRHKEEEQRAAWNALRDEVGHLALALEALQAQVQAAPPQGALEELRTE 155
QRH EE Q +W AL ++ L L E Q+ A Q AL++ E
Sbjct: 94 QRHAEERQATSW-ALTSQLQQLRLEHEVAATQLHLA--QAALQQALNE 138
>gi|169216868 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 714
Score = 27.7 bits (60), Expect = 5.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 108 QRHKEEEQRAAWNALRDEVGHLALALEALQAQVQAAPPQGALEELRTE 155
QRH EE Q +W AL ++ L L E Q+ A Q AL++ E
Sbjct: 94 QRHAEERQATSW-ALTSQLQQLRLEHEVAATQLHLA--QAALQQALNE 138
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 27.7 bits (60), Expect = 5.5
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 108 QRHKEEEQRAAWNALRD--EVGHLALALEALQAQVQAAPPQGALEELRTELQEVR 160
QRH+EEEQ L++ + H L + + Q Q A + L + R +L++++
Sbjct: 2402 QRHREEEQLLVQRELQELQTIKHHVLQQQQEERQAQFALQREQLAQQRLQLEQIQ 2456
>gi|38348296 C-type lectin domain family 4, member G [Homo sapiens]
Length = 293
Score = 27.7 bits (60), Expect = 5.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 109 RHKEEEQRAAWNALRDEVGHLALALEALQAQVQA-----APPQGALEELRTELQEVRAQL 163
R +Q AA AL++EVG QAQ+Q Q L E + L+E+R ++
Sbjct: 71 RTNASKQTAALGALKEEVGDCHSCCSGTQAQLQTTRAELGEAQAKLMEQESALRELRERV 130
>gi|32130516 serologically defined colon cancer antigen 1 [Homo
sapiens]
Length = 1076
Score = 27.7 bits (60), Expect = 5.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 120 NALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLCNP 166
+AL +++ + L +AQ Q P A++EL+ + V L NP
Sbjct: 367 SALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLRNP 413
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,601,017
Number of Sequences: 37866
Number of extensions: 253316
Number of successful extensions: 996
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 72
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.