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Search of human proteins with 51479152
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51479152 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit d isoform b [Homo sapiens]
(137 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51479152 ATP synthase, H+ transporting, mitochondrial F0 comp... 281 9e-77
gi|5453559 ATP synthase, H+ transporting, mitochondrial F0 compl... 268 1e-72
gi|169183850 PREDICTED: similar to hCG1809973 [Homo sapiens] 181 2e-46
gi|169179690 PREDICTED: similar to ATP synthase, H+ transporting... 181 2e-46
gi|239743684 PREDICTED: hypothetical protein LOC138864 [Homo sap... 181 2e-46
gi|169179753 PREDICTED: similar to hCG1809973 [Homo sapiens] 167 2e-42
gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo ... 31 0.28
gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo ... 31 0.28
gi|27262630 nuclear autoantigenic sperm protein isoform 3 [Homo ... 31 0.28
gi|216548395 dachsous 2 isoform 3 [Homo sapiens] 30 0.81
gi|216548385 dachsous 2 isoform 2 [Homo sapiens] 30 0.81
gi|92091575 coiled-coil domain containing 57 [Homo sapiens] 30 0.81
gi|4557335 aspartoacylase [Homo sapiens] 29 1.1
gi|189339202 aspartoacylase [Homo sapiens] 29 1.1
gi|27544939 chromosome 3 open reading frame 10 [Homo sapiens] 29 1.4
gi|38372919 basigin isoform 1 precursor [Homo sapiens] 28 1.8
gi|38372923 basigin isoform 4 [Homo sapiens] 28 1.8
gi|38372925 basigin isoform 2 precursor [Homo sapiens] 28 1.8
gi|239753482 PREDICTED: similar to HSPC300 [Homo sapiens] 28 1.8
gi|4502443 dystonin isoform 1e precursor [Homo sapiens] 28 1.8
gi|42734325 wings apart-like homolog [Homo sapiens] 28 1.8
gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens] 28 1.8
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens] 28 1.8
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens] 28 1.8
gi|94681049 hypothetical protein LOC80217 [Homo sapiens] 28 2.4
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 28 3.1
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 28 3.1
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens] 28 3.1
gi|55770834 centromere protein F [Homo sapiens] 27 4.0
gi|13375632 homeobox D1 [Homo sapiens] 27 5.3
>gi|51479152 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit d isoform b [Homo sapiens]
Length = 137
Score = 281 bits (720), Expect = 9e-77
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN
Sbjct: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
Query: 61 VAKAGLVDDFEKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETK 120
VAKAGLVDDFEKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETK
Sbjct: 61 VAKAGLVDDFEKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETK 120
Query: 121 LDKKKYPYWPHQPIENL 137
LDKKKYPYWPHQPIENL
Sbjct: 121 LDKKKYPYWPHQPIENL 137
>gi|5453559 ATP synthase, H+ transporting, mitochondrial F0 complex,
subunit d isoform a [Homo sapiens]
Length = 161
Score = 268 bits (685), Expect = 1e-72
Identities = 137/161 (85%), Positives = 137/161 (85%), Gaps = 24/161 (14%)
Query: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN
Sbjct: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
Query: 61 VAKAGLVDDFEKK------------------------VKSCAEWVSLSKARIVEYEKEME 96
VAKAGLVDDFEKK VKSCAEWVSLSKARIVEYEKEME
Sbjct: 61 VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120
Query: 97 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL 137
KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL
Sbjct: 121 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL 161
>gi|169183850 PREDICTED: similar to hCG1809973 [Homo sapiens]
Length = 144
Score = 181 bits (459), Expect = 2e-46
Identities = 95/144 (65%), Positives = 106/144 (73%), Gaps = 24/144 (16%)
Query: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
MAG+KLALK IDWV E I +NQKAIA+SL SWNE LTSRLA LPEN P+IDW YYKA+
Sbjct: 1 MAGQKLALKIIDWVTSWESISRNQKAIANSLTSWNEILTSRLAILPENKPSIDWTYYKAS 60
Query: 61 VAKAGLVDDFEKK------------------------VKSCAEWVSLSKARIVEYEKEME 96
VAKAGLVDDFEKK VK+CAEW+SLSKARI +YEK++E
Sbjct: 61 VAKAGLVDDFEKKFNALKFPVPEDKYTAQVDAEEKEDVKTCAEWMSLSKARIGQYEKQLE 120
Query: 97 KMKNLIPFDQMTIEDLNEAFPETK 120
KM+NLIPFDQ T EDLNEAFPETK
Sbjct: 121 KMRNLIPFDQTTTEDLNEAFPETK 144
>gi|169179690 PREDICTED: similar to ATP synthase, H+ transporting,
mitochondrial F0 complex, subunit d [Homo sapiens]
Length = 144
Score = 181 bits (459), Expect = 2e-46
Identities = 95/144 (65%), Positives = 106/144 (73%), Gaps = 24/144 (16%)
Query: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
MAG+KLALK IDWV E I +NQKAIA+SL SWNE LTSRLA LPEN P+IDW YYKA+
Sbjct: 1 MAGQKLALKIIDWVTSWESISRNQKAIANSLTSWNEILTSRLAILPENKPSIDWTYYKAS 60
Query: 61 VAKAGLVDDFEKK------------------------VKSCAEWVSLSKARIVEYEKEME 96
VAKAGLVDDFEKK VK+CAEW+SLSKARI +YEK++E
Sbjct: 61 VAKAGLVDDFEKKFNALKFPVPEDKYTAQVDAEEKEDVKTCAEWMSLSKARIGQYEKQLE 120
Query: 97 KMKNLIPFDQMTIEDLNEAFPETK 120
KM+NLIPFDQ T EDLNEAFPETK
Sbjct: 121 KMRNLIPFDQTTTEDLNEAFPETK 144
>gi|239743684 PREDICTED: hypothetical protein LOC138864 [Homo
sapiens]
Length = 144
Score = 181 bits (459), Expect = 2e-46
Identities = 95/144 (65%), Positives = 106/144 (73%), Gaps = 24/144 (16%)
Query: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
MAG+KLALK IDWV E I +NQKAIA+SL SWNE LTSRLA LPEN P+IDW YYKA+
Sbjct: 1 MAGQKLALKIIDWVTSWESISRNQKAIANSLTSWNEILTSRLAILPENKPSIDWTYYKAS 60
Query: 61 VAKAGLVDDFEKK------------------------VKSCAEWVSLSKARIVEYEKEME 96
VAKAGLVDDFEKK VK+CAEW+SLSKARI +YEK++E
Sbjct: 61 VAKAGLVDDFEKKFNALKFPVPEDKYTAQVDAEEKEDVKTCAEWMSLSKARIGQYEKQLE 120
Query: 97 KMKNLIPFDQMTIEDLNEAFPETK 120
KM+NLIPFDQ T EDLNEAFPETK
Sbjct: 121 KMRNLIPFDQTTTEDLNEAFPETK 144
>gi|169179753 PREDICTED: similar to hCG1809973 [Homo sapiens]
Length = 160
Score = 167 bits (424), Expect = 2e-42
Identities = 92/161 (57%), Positives = 106/161 (65%), Gaps = 31/161 (19%)
Query: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
MAG+KLALK IDWV E I +NQKAIA+SL SWNE LTSRLA LPEN P+IDW YYKA+
Sbjct: 1 MAGQKLALKIIDWVTSWESISRNQKAIANSLTSWNEILTSRLAILPENKPSIDWTYYKAS 60
Query: 61 VAKAGLVDDFEKK------------------------VKSCAEWVSLSKARIVEYEKEME 96
VAKAGLVDDFEKK VK+CAEW+SLSKARI +YEK++E
Sbjct: 61 VAKAGLVDDFEKKFNALKFPVPEDKYTAQVDAEEKEDVKTCAEWMSLSKARIGQYEKQLE 120
Query: 97 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL 137
KM+NLIPFDQ T EDL KL+ P P++ L
Sbjct: 121 KMRNLIPFDQTTTEDLXXXXXXXKLN-------PQMPVQTL 154
>gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo
sapiens]
Length = 788
Score = 31.2 bits (69), Expect = 0.28
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 67 VDDFEKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEA 115
++ E ++ E V ++ EY+KE+E++K L+P + IED E+
Sbjct: 611 IEVIENRMAVLNEQVKEAEGSSAEYKKEIEELKELLPEIREKIEDAKES 659
>gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo
sapiens]
Length = 790
Score = 31.2 bits (69), Expect = 0.28
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 67 VDDFEKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEA 115
++ E ++ E V ++ EY+KE+E++K L+P + IED E+
Sbjct: 613 IEVIENRMAVLNEQVKEAEGSSAEYKKEIEELKELLPEIREKIEDAKES 661
>gi|27262630 nuclear autoantigenic sperm protein isoform 3 [Homo
sapiens]
Length = 449
Score = 31.2 bits (69), Expect = 0.28
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 67 VDDFEKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEA 115
++ E ++ E V ++ EY+KE+E++K L+P + IED E+
Sbjct: 272 IEVIENRMAVLNEQVKEAEGSSAEYKKEIEELKELLPEIREKIEDAKES 320
>gi|216548395 dachsous 2 isoform 3 [Homo sapiens]
Length = 709
Score = 29.6 bits (65), Expect = 0.81
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 33 SWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDFEKKVKSCAEWVSLSKA 86
S ETL R+A L + PP +YKA+V++A + WVS S A
Sbjct: 520 STEETLLLRVADLNDQPPLFSQQHYKASVSEAAAPG-------TVVMWVSASDA 566
>gi|216548385 dachsous 2 isoform 2 [Homo sapiens]
Length = 1369
Score = 29.6 bits (65), Expect = 0.81
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 33 SWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDFEKKVKSCAEWVSLSKA 86
S ETL R+A L + PP +YKA+V++A + WVS S A
Sbjct: 520 STEETLLLRVADLNDQPPLFSQQHYKASVSEAAAPG-------TVVMWVSASDA 566
>gi|92091575 coiled-coil domain containing 57 [Homo sapiens]
Length = 915
Score = 29.6 bits (65), Expect = 0.81
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 6 LALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAG 65
L K +W A Q Q+A +S E +L L E D+ Y + +
Sbjct: 14 LLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQE-----DFVYNLQVLEERD 68
Query: 66 L-VDDFEKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNE----AFPETK 120
L ++ ++ EW +A + E + E K++ + + +E+L + AF E +
Sbjct: 69 LELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHR 128
Query: 121 LDKKK 125
L+ ++
Sbjct: 129 LELER 133
>gi|4557335 aspartoacylase [Homo sapiens]
Length = 313
Score = 29.3 bits (64), Expect = 1.1
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 54 WAYYKANVAKAGL-VDDF---EKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTI 109
W A + + GL V F + VK C ++ RI + E +KM +P++
Sbjct: 34 WLENGAEIQRTGLEVKPFITNPRAVKKCTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRA 93
Query: 110 EDLNEAF-PETKLDKKKYPYWPHQPIENL 137
+++N F P+ D + H N+
Sbjct: 94 QEINHLFGPKDSEDSYDIIFDLHNTTSNM 122
>gi|189339202 aspartoacylase [Homo sapiens]
Length = 313
Score = 29.3 bits (64), Expect = 1.1
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 54 WAYYKANVAKAGL-VDDF---EKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTI 109
W A + + GL V F + VK C ++ RI + E +KM +P++
Sbjct: 34 WLENGAEIQRTGLEVKPFITNPRAVKKCTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRA 93
Query: 110 EDLNEAF-PETKLDKKKYPYWPHQPIENL 137
+++N F P+ D + H N+
Sbjct: 94 QEINHLFGPKDSEDSYDIIFDLHNTTSNM 122
>gi|27544939 chromosome 3 open reading frame 10 [Homo sapiens]
Length = 75
Score = 28.9 bits (63), Expect = 1.4
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 12 DWV--AFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAID--WAYYKANVAK 63
DW + EII + K IA L S++ + SRLA L E A++ Y +A V K
Sbjct: 15 DWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTK 70
>gi|38372919 basigin isoform 1 precursor [Homo sapiens]
Length = 385
Score = 28.5 bits (62), Expect = 1.8
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 21 PQNQKAIASSLKSWNETLTSRLAALPEN-PPAIDWAYYK 58
P KA+ SS + NE T+ L E+ PP DWA+YK
Sbjct: 220 PPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYK 257
>gi|38372923 basigin isoform 4 [Homo sapiens]
Length = 205
Score = 28.5 bits (62), Expect = 1.8
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 21 PQNQKAIASSLKSWNETLTSRLAALPEN-PPAIDWAYYK 58
P KA+ SS + NE T+ L E+ PP DWA+YK
Sbjct: 40 PPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYK 77
>gi|38372925 basigin isoform 2 precursor [Homo sapiens]
Length = 269
Score = 28.5 bits (62), Expect = 1.8
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 21 PQNQKAIASSLKSWNETLTSRLAALPEN-PPAIDWAYYK 58
P KA+ SS + NE T+ L E+ PP DWA+YK
Sbjct: 104 PPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYK 141
>gi|239753482 PREDICTED: similar to HSPC300 [Homo sapiens]
Length = 85
Score = 28.5 bits (62), Expect = 1.8
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 12 DWV--AFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAID--WAYYKANVAKAG 65
DW + EII + K IA L S++ + SRLA L E A++ Y +A V+ G
Sbjct: 15 DWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVSLMG 72
>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
Length = 2649
Score = 28.5 bits (62), Expect = 1.8
Identities = 12/57 (21%), Positives = 33/57 (57%)
Query: 69 DFEKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETKLDKKK 125
DF++K+K E ++ S+ + E++++ ++ +I + + +LN +K +K++
Sbjct: 1641 DFQRKIKCLEEDLAKSQNLVSEFKQKCDQQNIIIQNTKKEVRNLNAELNASKEEKRR 1697
>gi|42734325 wings apart-like homolog [Homo sapiens]
Length = 1190
Score = 28.5 bits (62), Expect = 1.8
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 21 PQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVD---DFEKKVKSC 77
P + +AS +K N+T S+ PE+P I + K +V + GL + DFE ++S
Sbjct: 194 PNAETTVASEIKETNDTWNSQFGKRPESPSEI--SPIKGSV-RTGLFEWDNDFE-DIRSE 249
Query: 78 AEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPE 118
+SL ++E + + K + +E+LNEA E
Sbjct: 250 DCILSLDSDPLLEMKDDDFKNR---------LENLNEAIEE 281
>gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]
Length = 1137
Score = 28.5 bits (62), Expect = 1.8
Identities = 10/45 (22%), Positives = 29/45 (64%)
Query: 71 EKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEA 115
++++ S +W++ ++ R+++ E E+ K+ + ++ +ED +EA
Sbjct: 456 QQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEA 500
>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
Length = 1049
Score = 28.5 bits (62), Expect = 1.8
Identities = 10/45 (22%), Positives = 29/45 (64%)
Query: 71 EKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEA 115
++++ S +W++ ++ R+++ E E+ K+ + ++ +ED +EA
Sbjct: 414 QQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEA 458
>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
Length = 1091
Score = 28.5 bits (62), Expect = 1.8
Identities = 10/45 (22%), Positives = 29/45 (64%)
Query: 71 EKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEA 115
++++ S +W++ ++ R+++ E E+ K+ + ++ +ED +EA
Sbjct: 456 QQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEA 500
>gi|94681049 hypothetical protein LOC80217 [Homo sapiens]
Length = 1665
Score = 28.1 bits (61), Expect = 2.4
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 52 IDWAYYKANVAKAGLVDDFEKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQ----M 107
I W K+ A V+ F KK K + + I+ +E +K++N+ DQ +
Sbjct: 785 IPWIQQKSQEAIKKEVNLFSKKRKEIKQGIKSLSKTILNMMEENDKLENIAKLDQQEFGL 844
Query: 108 TIEDLNEAFPETKLDKKK 125
+E+L E++ + K
Sbjct: 845 DLEELERLHDESQEEVAK 862
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 27.7 bits (60), Expect = 3.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 74 VKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETKLDKKK 125
VK A+ +L I +YE+ M+++ + IEDL + E K+ K+K
Sbjct: 1148 VKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQ---EIKIQKQK 1196
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 27.7 bits (60), Expect = 3.1
Identities = 11/55 (20%), Positives = 29/55 (52%)
Query: 66 LVDDFEKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETK 120
++ D + K++ + + +++ + + EK ++M L+P Q I+ + PE +
Sbjct: 558 VISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLVPMRQSIIDLKEKEIPELR 612
>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
Length = 1312
Score = 27.7 bits (60), Expect = 3.1
Identities = 11/55 (20%), Positives = 29/55 (52%)
Query: 66 LVDDFEKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETK 120
++ D + K++ + + +++ + + EK ++M L+P Q I+ + PE +
Sbjct: 697 VISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLVPMRQSIIDLKEKEIPELR 751
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 27.3 bits (59), Expect = 4.0
Identities = 14/67 (20%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 60 NVAKAGLVDDFEKKVKSCAEWVSLSKAR--IVEYEKEMEKMKNLIPFDQMTIEDLNEAFP 117
N ++ ++ D ++K+ ++L K + + + EK+ + ++L+ + IE LN+
Sbjct: 530 NTSQETMLRDLQEKINQQENSLTLEKLKLAVADLEKQRDCSQDLLKKREHHIEQLNDKLS 589
Query: 118 ETKLDKK 124
+T+ + K
Sbjct: 590 KTEKESK 596
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 26.9 bits (58), Expect = 5.3
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 40 SRLAALPENPPAIDWAYYKANVAKAGLVDDFEKKVKSCAEWVSLSKARIVEYEKEMEKMK 99
S + LP +W K N +K G + ++ S A + S ++ E EKE K
Sbjct: 193 SPASGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNK 252
Query: 100 NL 101
L
Sbjct: 253 YL 254
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,039,728
Number of Sequences: 37866
Number of extensions: 176935
Number of successful extensions: 509
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 48
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.