Guide to the Human Genome
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Name: LOC100293765 Sequence: fasta or formatted (85aa) NCBI GI: 239753482
Description:

PREDICTED: similar to HSPC300

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1          6           1
 C cysteine            2.4          2           1
 D aspartate           4.7          4           1
 E glutamate          10.6          9           1
 F phenylalanine       2.4          2           1
 G glycine             3.5          3           1
 H histidine           2.4          2           1
 I isoleucine         11.8         10           2
 K lysine              4.7          4           2
 L leucine             7.1          6           1
 M methionine          4.7          4           1
 N asparagine          3.5          3           1
 P proline             2.4          2           1
 Q glutamine           3.5          3           1
 R arginine            9.4          8           2
 S serine              8.2          7           2
 T threonine           4.7          4           1
 V valine              2.4          2           1
 W tryptophan          1.2          1           1
 Y tyrosine            3.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to HSPC300 
C3orf10               0.762   chromosome 3 open reading frame 10 
BZRAP1                0.034   peripheral benzodiazepine receptor-associated prote...
ATP5H                 0.020   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5H                 0.020   ATP synthase, H+ transporting, mitochondrial F0 compl...
PLVAP                 0.020   plasmalemma vesicle associated protein 
FCGR1A                0.014   Fc fragment of IgG, high affinity Ia, receptor (CD64...
FCGR1B                0.014   Fc fragment of IgG, high affinity Ib, receptor (CD64...
RERG                  0.007   RAS-like, estrogen-regulated, growth inhibitor [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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