Guide to the Human Genome
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Name: LOC138864 Sequence: fasta or formatted (160aa) NCBI GI: 169179753
Description:

PREDICTED: similar to hCG1809973

Not currently referenced in the text

Other entries for this name:
alt prot {144aa} PREDICTED: similar to hCG1809973
alt prot {144aa} PREDICTED: hypothetical protein LOC138864
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         14           1
 C cysteine            0.6          1           1
 D aspartate           5.6          9           2
 E glutamate           7.5         12           2
 F phenylalanine       2.5          4           1
 G glycine             1.9          3           1
 H histidine           0.0          0           0
 I isoleucine          5.6          9           2
 K lysine             10.6         17           2
 L leucine             8.8         14           1
 M methionine          2.5          4           1
 N asparagine          4.4          7           1
 P proline             4.4          7           1
 Q glutamine           5.6          9           1
 R arginine            2.5          4           1
 S serine              6.2         10           1
 T threonine           6.9         11           3
 V valine              5.0          8           1
 W tryptophan          3.8          6           1
 X unknown             4.4          7           7
 Y tyrosine            2.5          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1809973 
LOC138864             0.883   PREDICTED: similar to hCG1809973 
LOC100133737          0.883   PREDICTED: similar to ATP synthase, H+ transporting...
LOC138864             0.883   PREDICTED: hypothetical protein LOC138864 
ATP5H                 0.714   ATP synthase, H+ transporting, mitochondrial F0 compl...
ATP5H                 0.502   ATP synthase, H+ transporting, mitochondrial F0 comp...
GCC2                  0.021   GRIP and coiled-coil domain-containing 2 
MLH3                  0.018   mutL homolog 3 isoform 1 
MLH3                  0.018   mutL homolog 3 isoform 2 
DCTN1                 0.014   dynactin 1 isoform 4 
DCTN1                 0.014   dynactin 1 isoform 3 
DCTN1                 0.014   dynactin 1 isoform 2 
DCTN1                 0.014   dynactin 1 isoform 1 
ENOSF1                0.014   enolase superfamily 1 isoform rTSalpha 
ENOSF1                0.014   enolase superfamily 1 isoform rTS beta 
ENOSF1                0.014   rTS beta protein isoform rTS gamma 
UTP20                 0.011   down-regulated in metastasis 
LOC653877             0.011   PREDICTED: similar to Temporarily Assigned Gene name...
BBX                   0.011   HMG-BOX transcription factor BBX isoform 1 
WDR87                 0.007   NYD-SP11 protein 
ULK3                  0.007   unc-51-like kinase 3 
ZNF462                0.007   zinc finger protein 462 
JMJD6                 0.007   jumonji domain containing 6 isoform 1 
JMJD6                 0.007   jumonji domain containing 6 isoform 2 
KIAA1919              0.007   sodium-dependent glucose transporter 1 
PDCL2                 0.007   phosducin-like 2 
EPS15                 0.007   epidermal growth factor receptor pathway substrate ...
EPS15                 0.007   epidermal growth factor receptor pathway substrate 15...
DNAH1                 0.007   dynein, axonemal, heavy chain 1 
ROCK1                 0.007   Rho-associated, coiled-coil containing protein kinase...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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