Guide to the Human Genome
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Name: LOC100133737 Sequence: fasta or formatted (144aa) NCBI GI: 169179690
Description:

PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         14           1
 C cysteine            0.7          1           1
 D aspartate           6.2          9           2
 E glutamate           9.7         14           2
 F phenylalanine       3.5          5           1
 G glycine             2.1          3           1
 H histidine           0.0          0           0
 I isoleucine          6.2          9           2
 K lysine             11.1         16           2
 L leucine             8.3         12           1
 M methionine          2.1          3           1
 N asparagine          4.9          7           1
 P proline             4.2          6           1
 Q glutamine           4.2          6           1
 R arginine            2.8          4           1
 S serine              6.9         10           1
 T threonine           6.9         10           3
 V valine              4.2          6           1
 W tryptophan          3.5          5           1
 Y tyrosine            2.8          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ATP synthase, H+ transporting... 
LOC138864             1.000   PREDICTED: similar to hCG1809973 
LOC138864             1.000   PREDICTED: hypothetical protein LOC138864 
LOC138864             0.936   PREDICTED: similar to hCG1809973 
ATP5H                 0.805   ATP synthase, H+ transporting, mitochondrial F0 compl...
ATP5H                 0.584   ATP synthase, H+ transporting, mitochondrial F0 comp...
GCC2                  0.026   GRIP and coiled-coil domain-containing 2 
MLH3                  0.022   mutL homolog 3 isoform 1 
MLH3                  0.022   mutL homolog 3 isoform 2 
EPS15                 0.019   epidermal growth factor receptor pathway substrate ...
EPS15                 0.019   epidermal growth factor receptor pathway substrate 15...
ZNF462                0.019   zinc finger protein 462 
DCTN1                 0.015   dynactin 1 isoform 4 
DCTN1                 0.015   dynactin 1 isoform 3 
DCTN1                 0.015   dynactin 1 isoform 2 
DCTN1                 0.015   dynactin 1 isoform 1 
BBX                   0.015   HMG-BOX transcription factor BBX isoform 2 
ENOSF1                0.015   enolase superfamily 1 isoform rTSalpha 
ENOSF1                0.015   enolase superfamily 1 isoform rTS beta 
ENOSF1                0.015   rTS beta protein isoform rTS gamma 
ROCK1                 0.011   Rho-associated, coiled-coil containing protein kinase...
UTP20                 0.011   down-regulated in metastasis 
LOC653877             0.011   PREDICTED: similar to Temporarily Assigned Gene name...
REV1                  0.011   REV1-like isoform 1 
AKAP9                 0.011   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.011   A-kinase anchor protein 9 isoform 3 
BBX                   0.011   HMG-BOX transcription factor BBX isoform 1 
DHRS9                 0.011   NADP-dependent retinol dehydrogenase/reductase [Homo...
DHRS9                 0.011   NADP-dependent retinol dehydrogenase/reductase [Hom...
DHRS9                 0.011   NADP-dependent retinol dehydrogenase/reductase [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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