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Search of human proteins with 51477702
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51477702 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 2 [Homo sapiens]
(483 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51477702 SWI/SNF related, matrix associated, actin dependent ... 969 0.0
gi|21264353 SWI/SNF related, matrix associated, actin dependent ... 920 0.0
gi|51477704 SWI/SNF related, matrix associated, actin dependent ... 920 0.0
gi|133908629 SWI/SNF-related matrix-associated actin-dependent r... 699 0.0
gi|148536864 SWI/SNF-related matrix-associated actin-dependent r... 667 0.0
gi|148536862 SWI/SNF-related matrix-associated actin-dependent r... 667 0.0
gi|133908631 SWI/SNF-related matrix-associated actin-dependent r... 617 e-177
gi|47132519 Ras association and pleckstrin homology domains 1 is... 41 0.002
gi|146134388 YLP motif containing 1 [Homo sapiens] 41 0.002
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo... 40 0.006
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 40 0.006
gi|33286446 opioid growth factor receptor [Homo sapiens] 39 0.014
gi|13994335 Mix-like homeobox protein 1 [Homo sapiens] 39 0.014
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 39 0.014
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 38 0.018
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 38 0.018
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 38 0.018
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 38 0.018
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 38 0.018
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 38 0.018
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 38 0.018
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 38 0.018
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 38 0.023
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.023
gi|150418009 transforming, acidic coiled-coil containing protein... 38 0.023
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 38 0.023
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens] 38 0.023
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 37 0.031
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 37 0.031
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 37 0.031
>gi|51477702 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 2
[Homo sapiens]
Length = 483
Score = 969 bits (2505), Expect = 0.0
Identities = 483/483 (100%), Positives = 483/483 (100%)
Query: 1 MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL 60
MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL
Sbjct: 1 MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL 60
Query: 61 APAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQ 120
APAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQ
Sbjct: 61 APAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQ 120
Query: 121 AYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIA 180
AYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIA
Sbjct: 121 AYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIA 180
Query: 181 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV 240
SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV
Sbjct: 181 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV 240
Query: 241 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH 300
KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH
Sbjct: 241 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH 300
Query: 301 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI 360
DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI
Sbjct: 301 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI 360
Query: 361 DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV 420
DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV
Sbjct: 361 DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV 420
Query: 421 QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV 480
QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV
Sbjct: 421 QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV 480
Query: 481 RNT 483
RNT
Sbjct: 481 RNT 483
>gi|21264353 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 920 bits (2377), Expect = 0.0
Identities = 457/457 (100%), Positives = 457/457 (100%)
Query: 27 RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ 86
RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ
Sbjct: 14 RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ 73
Query: 87 PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA 146
PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA
Sbjct: 74 PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA 133
Query: 147 LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFK 206
LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFK
Sbjct: 134 LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFK 193
Query: 207 SLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLD 266
SLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLD
Sbjct: 194 SLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLD 253
Query: 267 PRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIP 326
PRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIP
Sbjct: 254 PRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIP 313
Query: 327 QRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEIS 386
QRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEIS
Sbjct: 314 QRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEIS 373
Query: 387 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 446
ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR
Sbjct: 374 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 433
Query: 447 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
Sbjct: 434 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
>gi|51477704 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 920 bits (2377), Expect = 0.0
Identities = 457/457 (100%), Positives = 457/457 (100%)
Query: 27 RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ 86
RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ
Sbjct: 14 RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ 73
Query: 87 PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA 146
PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA
Sbjct: 74 PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA 133
Query: 147 LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFK 206
LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFK
Sbjct: 134 LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFK 193
Query: 207 SLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLD 266
SLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLD
Sbjct: 194 SLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLD 253
Query: 267 PRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIP 326
PRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIP
Sbjct: 254 PRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIP 313
Query: 327 QRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEIS 386
QRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEIS
Sbjct: 314 QRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEIS 373
Query: 387 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 446
ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR
Sbjct: 374 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 433
Query: 447 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
Sbjct: 434 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
>gi|133908629 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform a [Homo sapiens]
Length = 515
Score = 699 bits (1805), Expect = 0.0
Identities = 348/464 (75%), Positives = 404/464 (87%), Gaps = 15/464 (3%)
Query: 27 RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ 86
RPGM G+RM QG MGPPG Y G+P+VRPGLA +GM+ +RKR AP Q Q Q Q
Sbjct: 60 RPGMLPGSRMTPQGPSMGPPG--YGGNPSVRPGLAQSGMDQSRKRPAP---QQIQQVQQQ 114
Query: 87 PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA 146
V R+ +AK++KMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKR+DIQEA
Sbjct: 115 AVQN---RNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEA 171
Query: 147 LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPS-------KQKR 199
LKRP+KQKRKLR++ISNTFNPAK DAED +G++ASWELRVEG+LL+D + KQKR
Sbjct: 172 LKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR 231
Query: 200 KFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQ 259
KFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD++VRCT+LLMLDYQ
Sbjct: 232 KFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQ 291
Query: 260 PPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPR 319
PPQFKLDPRLARLLG+HTQ+R I+QALWQY+KT++LQD H++E++ DKY QQIF+ R
Sbjct: 292 PPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQR 351
Query: 320 LKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLST 379
+KFSEIPQRL ALL+PP+PI+INHVISVDP+DQKKTACYDIDVEV++ LK QM+SFLLST
Sbjct: 352 MKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLST 411
Query: 380 ANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAG 439
A+QQEI+ LD+KIHETIE+INQLK QR+FMLSF+RDP+G++ D L+SQ RDLK MTDV G
Sbjct: 412 ASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVG 471
Query: 440 NPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
NPEEERRAEFY QPW+QEAV RYFY K+QQRRQELEQ+L +RNT
Sbjct: 472 NPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
>gi|148536864 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 1 [Homo sapiens]
Length = 531
Score = 667 bits (1720), Expect = 0.0
Identities = 333/470 (70%), Positives = 387/470 (82%), Gaps = 24/470 (5%)
Query: 27 RPGMPSGARMPHQGAPMGPP-GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQG 85
RPGM G RMP G +GPP GSP+ + +RPG+ P M+P RKR P Q
Sbjct: 73 RPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQ------- 125
Query: 86 QPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQE 145
P PA+ R KRRKMADK+LPQRIRELVPESQAYMDLLAFERKLDQTI RKR++IQE
Sbjct: 126 ---PPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQE 182
Query: 146 ALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS------------IASWELRVEGKLLDD 193
A+K+P+ QKRKLR+YISNTF+P+K + DS G+ +ASWELRVEGKLLDD
Sbjct: 183 AIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDD 241
Query: 194 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL 253
PSKQKRKFSSFFKSLVIELDK+LYGPDNHLVEWHR PTTQETDGFQVKRPGDL+V+CTLL
Sbjct: 242 PSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLL 301
Query: 254 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ 313
LMLD+QPPQ+KLDPRLARLLG+HTQ+R+AI+QALW Y+K N+LQD H++EYIN ++YF+Q
Sbjct: 302 LMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQ 361
Query: 314 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS 373
IF C RL+FSEIP +L LL PDPIVINHVISVDP+DQKKTACYDIDVEV++PLK QMS
Sbjct: 362 IFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMS 421
Query: 374 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV 433
+FL ST NQQEI++LD KIHETIESINQLK QRDFMLSFS DP+ ++Q+ LRSQ RDLK+
Sbjct: 422 NFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKI 481
Query: 434 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
+TDV GNPEEERRA FYHQPW+QEAV R+ + K+QQRRQELEQ L +R T
Sbjct: 482 ITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
>gi|148536862 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 2 [Homo sapiens]
Length = 510
Score = 667 bits (1720), Expect = 0.0
Identities = 333/470 (70%), Positives = 387/470 (82%), Gaps = 24/470 (5%)
Query: 27 RPGMPSGARMPHQGAPMGPP-GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQG 85
RPGM G RMP G +GPP GSP+ + +RPG+ P M+P RKR P Q
Sbjct: 52 RPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQ------- 104
Query: 86 QPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQE 145
P PA+ R KRRKMADK+LPQRIRELVPESQAYMDLLAFERKLDQTI RKR++IQE
Sbjct: 105 ---PPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQE 161
Query: 146 ALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS------------IASWELRVEGKLLDD 193
A+K+P+ QKRKLR+YISNTF+P+K + DS G+ +ASWELRVEGKLLDD
Sbjct: 162 AIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDD 220
Query: 194 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL 253
PSKQKRKFSSFFKSLVIELDK+LYGPDNHLVEWHR PTTQETDGFQVKRPGDL+V+CTLL
Sbjct: 221 PSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLL 280
Query: 254 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ 313
LMLD+QPPQ+KLDPRLARLLG+HTQ+R+AI+QALW Y+K N+LQD H++EYIN ++YF+Q
Sbjct: 281 LMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQ 340
Query: 314 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS 373
IF C RL+FSEIP +L LL PDPIVINHVISVDP+DQKKTACYDIDVEV++PLK QMS
Sbjct: 341 IFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMS 400
Query: 374 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV 433
+FL ST NQQEI++LD KIHETIESINQLK QRDFMLSFS DP+ ++Q+ LRSQ RDLK+
Sbjct: 401 NFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKI 460
Query: 434 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
+TDV GNPEEERRA FYHQPW+QEAV R+ + K+QQRRQELEQ L +R T
Sbjct: 461 ITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 510
>gi|133908631 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform b [Homo sapiens]
Length = 474
Score = 617 bits (1592), Expect = e-177
Identities = 318/464 (68%), Positives = 367/464 (79%), Gaps = 56/464 (12%)
Query: 27 RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ 86
RPGM G+RM QG MGPPG Y G+P+VRPGLA +GM+ +RKR AP Q Q Q Q
Sbjct: 60 RPGMLPGSRMTPQGPSMGPPG--YGGNPSVRPGLAQSGMDQSRKRPAP---QQIQQVQQQ 114
Query: 87 PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA 146
V R+ +AK++KMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKR+DIQEA
Sbjct: 115 AVQN---RNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEA 171
Query: 147 LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPS-------KQKR 199
LKRP+KQKRKLR++ISNTFNPAK DAED +G++ASWELRVEG+LL+D + KQKR
Sbjct: 172 LKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR 231
Query: 200 KFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQ 259
KFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD++VRCT+LLMLDYQ
Sbjct: 232 KFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQ 291
Query: 260 PPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPR 319
PPQFKLDPRLARLLG+HTQ+R I+QALWQY+KT++LQD H++E++ DKY QQIF+ R
Sbjct: 292 PPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQR 351
Query: 320 LKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLST 379
+KFSEIPQRL ALL+PP+PI+INHVISVDP+DQKKTACYDIDVEV++ LK QM+SFLLST
Sbjct: 352 MKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLST 411
Query: 380 ANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAG 439
A+QQEI+ LD+ K MTDV G
Sbjct: 412 ASQQEIATLDN-----------------------------------------KTMTDVVG 430
Query: 440 NPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
NPEEERRAEFY QPW+QEAV RYFY K+QQRRQELEQ+L +RNT
Sbjct: 431 NPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 41.2 bits (95), Expect = 0.002
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 38 HQGAPMGPPGSPYMGSPAVRPGLA--PAGMEPARKRAAPPPGQSQAQSQGQPVPTAPA 93
H GA PP P M S +V+P + P G+ P PPP A +Q +P P AP+
Sbjct: 679 HSGALFKPPTPPVMQSQSVKPQILVPPNGVVPPPPPPPPPPTPGSAMAQLKPAPCAPS 736
Score = 30.0 bits (66), Expect = 4.9
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 31 PSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQ------ 84
PS +P P PP S + P P PA P A+P P +S + +
Sbjct: 906 PSSIPVPSPDFPPPPPESSLVFPPPP-PSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTS 964
Query: 85 ---GQPVPTAPARSRSAKRRKMADKILPQR 111
G+ P P R+ S K A+ P+R
Sbjct: 965 SPGGKKPPPTPQRNSSIKSSSGAEHPEPKR 994
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 41.2 bits (95), Expect = 0.002
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQP 87
P MP P P+ PP P P PG+ P M P+ + PPPG + S P
Sbjct: 531 PTMPPPVLPPSLPPPVMPPALPATVPP---PGMPPPVMPPSLPTSVPPPGMPPSLSSAGP 587
Query: 88 VPTAPARSRSA 98
P P S S+
Sbjct: 588 PPVLPPPSLSS 598
Score = 34.3 bits (77), Expect = 0.26
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 9 GARKATKSKLFEFL--VHGVRPGMPSGARMPHQGAPMG--PPGSPYMGSPAVRPGLAPAG 64
G KAT+S L E + ++ MP P PP P M P + P L P
Sbjct: 487 GHMKATQSYLQEKVNSFQNMKNQYMGNMSMPPPFVPYSQMPPPLPTMPPPVLPPSLPPPV 546
Query: 65 MEPARKRAAPPPG 77
M PA PPPG
Sbjct: 547 MPPALPATVPPPG 559
Score = 31.2 bits (69), Expect = 2.2
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 22 LVHGVRPGMPSGARMPHQGAPMGPPGSP---------YMGSPAVRPG-LAPAGMEPARKR 71
++H R G P M + P PP P YM P P P +P
Sbjct: 127 MLHHQRDGPPGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPTSSQPYLPP 186
Query: 72 AAPPPGQS-QAQSQGQPVPTAPARSRSAK 99
A P P QS +QS P P+ + S S++
Sbjct: 187 AQPSPSQSPPSQSYLAPTPSYSSSSSSSQ 215
>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
sapiens]
Length = 606
Score = 39.7 bits (91), Expect = 0.006
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 42 PMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQS-QGQPVPTAPARSRS 97
P GPPGSP P +PG+A P ++ A P G+ Q G P P P S+S
Sbjct: 548 PEGPPGSPGPSGPQGKPGIAGKTGSPGQRGAMGPKGEPGIQGPPGLPGPPGPPGSQS 604
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 39.7 bits (91), Expect = 0.006
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 31 PSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVP- 89
PS PH+ P G PA PG A E + K+ APPP QA PVP
Sbjct: 608 PSPTPSPHR------PSIRTKGEPAPPPGKAG---EKSVKKPAPPPAPPQATKTTAPVPE 658
Query: 90 -TAPARSRSAKRRKMADKILPQR 111
T P R A+R++ + P+R
Sbjct: 659 PTKPGDPREARRKERPARTPPRR 681
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 38.5 bits (88), Expect = 0.014
Identities = 30/85 (35%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPG---LAPAGMEPARK-------RAAPPPG 77
PG PS P +P GP G SP+ PG PAG EPA R A P G
Sbjct: 515 PGSPSETPGP---SPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAG 571
Query: 78 QSQAQSQGQ---PVPTAPARSRSAK 99
A+S + P P P R A+
Sbjct: 572 DEPAESPSETPGPSPAGPTRDEPAE 596
Score = 37.7 bits (86), Expect = 0.023
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 19/100 (19%)
Query: 25 GVRPGMPSG---ARMPHQG---APMGPPGSPYMGSPAVRPG---LAPAGMEPARK----- 70
G RP P+G A P + +P GP SP+ PG PAG EPA
Sbjct: 563 GPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETP 622
Query: 71 --RAAPPPGQSQAQSQGQ---PVPTAPARSRSAKRRKMAD 105
R A P G A+S + P P P R AK + A+
Sbjct: 623 GPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEAAE 662
Score = 30.0 bits (66), Expect = 4.9
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 25 GVRPGMPSG---ARMPHQGA---PMGPPGSPYMGSPAVRPGLAPAGM---EPARKRAAPP 75
G RP P+G A P + P GP G SP+ PG +PAG EPA+ A
Sbjct: 603 GPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEAAE 662
Query: 76 PGQSQAQSQGQ 86
++ +S +
Sbjct: 663 LQDAEVESSAK 673
>gi|13994335 Mix-like homeobox protein 1 [Homo sapiens]
Length = 232
Score = 38.5 bits (88), Expect = 0.014
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 35 RMPHQGAPMGPPGSP---YMGSPAVRPGLAP-AGMEPARKRAAPPPGQSQAQSQGQPVPT 90
R PH G + PP SP + +P PG A AG APPP S G P P
Sbjct: 21 RAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDPGPAPPP----PASLGSPAPP 76
Query: 91 APARSRSAKRRKMADKILPQRIR--ELVPESQAYMDLLAFERKLDQTIM 137
A + SA +R+ ++++ ELV Y D+ ER T++
Sbjct: 77 KGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLL 125
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 38.5 bits (88), Expect = 0.014
Identities = 29/71 (40%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 26 VRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQS-- 83
V PGMP G MP G M PPG G P + PG+ P P + PP Q+QA S
Sbjct: 177 VMPGMPPGM-MPMGG--MMPPGP---GIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAP 230
Query: 84 ---QGQPVPTA 91
P PTA
Sbjct: 231 GILNRPPAPTA 241
Score = 33.1 bits (74), Expect = 0.58
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 27 RPGMPSGARMPHQGAPMGPPGSPYM---------GSPAVRPGLAPAGMEPARKRAAPPPG 77
+PG+P P GAP PPG P + G P V PG+ P GM P P PG
Sbjct: 144 QPGLP-----PVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGM-PPGMMPMGGMMPPGPG 197
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 38.1 bits (87), Expect = 0.018
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 25 GVRPGMPSG-----------ARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 73
GV PGMP M + AP P P RP AP + PA
Sbjct: 267 GVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVM 326
Query: 74 PPPGQSQAQSQGQPVPTAPARSRSAK 99
PP QS Q QP P P + ++
Sbjct: 327 PPQTQSPGQ-PAQPAPMVPLHQKQSR 351
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 38.1 bits (87), Expect = 0.018
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 25 GVRPGMPSG-----------ARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 73
GV PGMP M + AP P P RP AP + PA
Sbjct: 267 GVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVM 326
Query: 74 PPPGQSQAQSQGQPVPTAPARSRSAK 99
PP QS Q QP P P + ++
Sbjct: 327 PPQTQSPGQ-PAQPAPMVPLHQKQSR 351
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 38.1 bits (87), Expect = 0.018
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 25 GVRPGMPSG-----------ARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 73
GV PGMP M + AP P P RP AP + PA
Sbjct: 267 GVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVM 326
Query: 74 PPPGQSQAQSQGQPVPTAPARSRSAK 99
PP QS Q QP P P + ++
Sbjct: 327 PPQTQSPGQ-PAQPAPMVPLHQKQSR 351
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 38.1 bits (87), Expect = 0.018
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 25 GVRPGMPSG-----------ARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 73
GV PGMP M + AP P P RP AP + PA
Sbjct: 267 GVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVM 326
Query: 74 PPPGQSQAQSQGQPVPTAPARSRSAK 99
PP QS Q QP P P + ++
Sbjct: 327 PPQTQSPGQ-PAQPAPMVPLHQKQSR 351
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 38.1 bits (87), Expect = 0.018
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 25 GVRPGMPSG-----------ARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 73
GV PGMP M + AP P P RP AP + PA
Sbjct: 267 GVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVM 326
Query: 74 PPPGQSQAQSQGQPVPTAPARSRSAK 99
PP QS Q QP P P + ++
Sbjct: 327 PPQTQSPGQ-PAQPAPMVPLHQKQSR 351
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 38.1 bits (87), Expect = 0.018
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 25 GVRPGMPSG-----------ARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 73
GV PGMP M + AP P P RP AP + PA
Sbjct: 267 GVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVM 326
Query: 74 PPPGQSQAQSQGQPVPTAPARSRSAK 99
PP QS Q QP P P + ++
Sbjct: 327 PPQTQSPGQ-PAQPAPMVPLHQKQSR 351
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 38.1 bits (87), Expect = 0.018
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 25 GVRPGMPSG-----------ARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 73
GV PGMP M + AP P P RP AP + PA
Sbjct: 267 GVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVM 326
Query: 74 PPPGQSQAQSQGQPVPTAPARSRSAK 99
PP QS Q QP P P + ++
Sbjct: 327 PPQTQSPGQ-PAQPAPMVPLHQKQSR 351
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 38.1 bits (87), Expect = 0.018
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL---------APAGMEPARKRAAPPPGQ 78
PGMP G P + P GPPGS G P +R PAG + +R PP Q
Sbjct: 1032 PGMPGGMGTPGEPGPQGPPGS--RGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQ 1089
Query: 79 SQAQSQGQ 86
+ GQ
Sbjct: 1090 GRPGRPGQ 1097
Score = 29.3 bits (64), Expect = 8.3
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQG 85
PG+P +P P GPPG PY G+P + PG P G + + PG++ ++G
Sbjct: 639 PGLPGLPGIPGARGPRGPPG-PY-GNPGL-PG--PPGAKGQKGDPGLSPGKAHDGAKG 691
Score = 29.3 bits (64), Expect = 8.3
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 29 GMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQP 87
G P A +P GPPG + G + L P G R P Q + S+GQP
Sbjct: 1475 GNPGVAGLP---GAQGPPG--FKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQP 1528
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 37.7 bits (86), Expect = 0.023
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 33 GARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRA--APPPGQSQAQSQ-----G 85
G P G P PPG P P PGL P+G+ A A PPP +Q G
Sbjct: 161 GPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGG 220
Query: 86 QPVPTAPARSRSAKRRKMA 104
P A AK RK++
Sbjct: 221 AGAPGLAAAIAGAKLRKVS 239
Score = 29.6 bits (65), Expect = 6.4
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 68 ARKRAAPPPGQS----QAQSQGQPVPTAPARSRSAKR-----------RKMADKILPQRI 112
AR+R A G+ ++ +Q +P PA+S S +R K + +
Sbjct: 272 ARRRKATQVGEKTPKDESANQEEPEARVPAQSESVRRPWEKNSTTLPRMKSSSSVTTSET 331
Query: 113 RELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLR 158
+ P S Y DL +++L + + ++ ++E + Q+ + R
Sbjct: 332 QPCTPSSSDYSDLQRVKQELLEEVKKELQKVKEEIIEAFVQELRKR 377
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.7 bits (86), Expect = 0.023
Identities = 24/74 (32%), Positives = 30/74 (40%)
Query: 29 GMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPV 88
G SGA G+ PP P SP VR A A P + P +S SQG+
Sbjct: 318 GQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGG 377
Query: 89 PTAPARSRSAKRRK 102
A R +RR+
Sbjct: 378 RAAGGAGRRRRRRR 391
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 37.7 bits (86), Expect = 0.023
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 13/132 (9%)
Query: 31 PSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEP--ARKRAAPPPGQSQAQSQGQPV 88
P GAR P PP S P+ A E A AAP G + +P
Sbjct: 84 PQGARGPEGSLLPSPPPSQEREHPSSSMPFAECPPEGCLASPAAAPEDGPQTQSPRREPA 143
Query: 89 PTAPA---------RSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRK 139
P AP R S +++A +P RE P+ + +F +DQ+
Sbjct: 144 PNAPGDIAAAFPAERDSSTPYQEIA--AVPSAGRERQPKEEGQKSSFSFSSGIDQSPGMS 201
Query: 140 RVDIQEALKRPM 151
V ++E +K P+
Sbjct: 202 PVPLREPMKAPL 213
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 37.7 bits (86), Expect = 0.023
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 28 PGMPSGARMPHQG----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQS 83
PG P G P QG +P PPG P P + G P G P + PP Q +
Sbjct: 135 PGKPQGP--PPQGDKSRSPRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQGPPPQGGKKP 190
Query: 84 QGQPVPTAP 92
QG P P P
Sbjct: 191 QGPPPPGKP 199
Score = 37.4 bits (85), Expect = 0.031
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 28 PGMPSGARMPHQG----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQS 83
PG P G P QG +P PPG P P + G P G P + PP Q +
Sbjct: 74 PGKPQGP--PPQGDKSRSPRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQGPPPQGGNRP 129
Query: 84 QGQPVPTAP 92
QG P P P
Sbjct: 130 QGPPPPGKP 138
Score = 35.0 bits (79), Expect = 0.15
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPPGQSQAQSQ 84
PG P G P GPP P G P P G P G P K PPP +++S
Sbjct: 155 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSS 212
Query: 85 GQP 87
P
Sbjct: 213 QSP 215
Score = 34.7 bits (78), Expect = 0.20
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 28 PGMPSGARMPHQG----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQS 83
PG P G P QG + PPG P P + G P G P + PP Q +
Sbjct: 196 PGKPQGP--PPQGDKSRSSQSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 251
Query: 84 QGQPVPTAP 92
QG P P P
Sbjct: 252 QGPPPPGKP 260
Score = 34.3 bits (77), Expect = 0.26
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPPGQSQAQSQ 84
PG P G P GPP P G P P G P G P K PPP +++S
Sbjct: 94 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSP 151
Query: 85 GQP 87
P
Sbjct: 152 RSP 154
Score = 32.3 bits (72), Expect = 0.99
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 28 PGMPSGARMPHQGA--PMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQG 85
PG P G P QG P GPP P + + + P K PPP Q Q QG
Sbjct: 176 PGKPQGP--PPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPP-QGGNQPQG 232
Query: 86 QPVP 89
P P
Sbjct: 233 PPPP 236
Score = 32.0 bits (71), Expect = 1.3
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 31 PSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQP 87
P G P QG P PPG P P + G P G P K PPP +++S P
Sbjct: 41 PQGGNKP-QGPPP-PPGKPQ--GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP 93
Score = 31.2 bits (69), Expect = 2.2
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQP 87
PG P G P GPP P + + + P K PPP Q Q QG P
Sbjct: 54 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP-QGGNQPQGPP 112
Query: 88 VP 89
P
Sbjct: 113 PP 114
Score = 31.2 bits (69), Expect = 2.2
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQP 87
PG P G P GPP P + + + P K PPP Q Q QG P
Sbjct: 115 PGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP-QGGNQPQGPP 173
Query: 88 VP 89
P
Sbjct: 174 PP 175
Score = 30.0 bits (66), Expect = 4.9
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 28 PGMPSGARMPHQGAPMGPP--GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQG 85
PG P G P GPP G P G PA + + P K PP Q QG
Sbjct: 237 PGKPQGPPPQGGNKPQGPPPPGKP-QGPPAQGGSKSQSARSPPGKPQGPPQ-QEGNNPQG 294
Query: 86 QPVP 89
P P
Sbjct: 295 PPPP 298
>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
Length = 895
Score = 37.7 bits (86), Expect = 0.023
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 12/147 (8%)
Query: 37 PHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQ----SQGQPVPTAP 92
P AP+GP G +P V P AP P + PPPG + S G +P A
Sbjct: 221 PRVAAPVGPVGP----TPTVLPMGAPV---PRPRGPPPPPGDENREMDDPSVGPKIPQAL 273
Query: 93 ARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMK 152
+ K + + Q E+ ++++ + A E + D + K+ ++ R K
Sbjct: 274 EKILQLKESRQEEMNSQQEEEEMETDARSSLGQSASETEEDTVSVSKKEKNRKRRNRKKK 333
Query: 153 QK-RKLRLYISNTFNPAKPDAEDSDGS 178
+K +++R S + + D+ S GS
Sbjct: 334 KKPQRVRGVSSESSGDREKDSTRSRGS 360
Score = 31.2 bits (69), Expect = 2.2
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 30 MPSGARMPHQGAPMGPPG--SPYMGSPAVRPGLAPA-------------------GMEPA 68
+P GA +P P PPG + M P+V P + A E
Sbjct: 237 LPMGAPVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEM 296
Query: 69 RKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPES 119
A GQS ++++ V + + ++ KRR K PQR+R + ES
Sbjct: 297 ETDARSSLGQSASETEEDTV-SVSKKEKNRKRRNRKKKKKPQRVRGVSSES 346
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 37.4 bits (85), Expect = 0.031
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 27 RPGMPSGARMPHQGAPMGPPGSP--YMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQ 84
+PG PS P+ GP SP ++ SP+ +P +P + + P PG
Sbjct: 457 QPGQPSS--QPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVN 514
Query: 85 GQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFE-RKLDQTIMRKRVDI 143
V +PA S A+ ++ DK L Q + + P + + E RK D + M+ +DI
Sbjct: 515 PSSV-MSPAGSSQAEEQQYLDK-LKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLLDI 572
Query: 144 --QEALKRPMKQKRKLRLYISNTFN 166
+ + P+K +K + + N
Sbjct: 573 LTDPSKRCPLKTLQKCEIALEKLKN 597
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 37.4 bits (85), Expect = 0.031
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 27 RPGMPSGARMPHQGAPMGPPGSP--YMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQ 84
+PG PS P+ GP SP ++ SP+ +P +P + + P PG
Sbjct: 417 QPGQPSS--QPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVN 474
Query: 85 GQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFE-RKLDQTIMRKRVDI 143
V +PA S A+ ++ DK L Q + + P + + E RK D + M+ +DI
Sbjct: 475 PSSV-MSPAGSSQAEEQQYLDK-LKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLLDI 532
Query: 144 --QEALKRPMKQKRKLRLYISNTFN 166
+ + P+K +K + + N
Sbjct: 533 LTDPSKRCPLKTLQKCEIALEKLKN 557
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 37.4 bits (85), Expect = 0.031
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 28 PGMPSGARMPHQG----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQS 83
PG P G P QG +P PPG P P + G P G P + PP Q +
Sbjct: 95 PGKPQGP--PPQGDKSRSPRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 150
Query: 84 QGQPVPTAP 92
QG P P P
Sbjct: 151 QGPPPPGKP 159
Score = 35.8 bits (81), Expect = 0.089
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 29 GMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPPGQSQAQSQG 85
G P GA P GPP P G P P G P G P + PP Q + QG
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPP--GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 91
Query: 86 QPVPTAP 92
P P P
Sbjct: 92 PPPPGKP 98
Score = 35.4 bits (80), Expect = 0.12
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPP-GQSQAQS 83
PG P G P GPP P G P P G P G P K PPP G +++QS
Sbjct: 177 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQS 234
Query: 84 QGQP 87
P
Sbjct: 235 ARSP 238
Score = 35.0 bits (79), Expect = 0.15
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 28 PGMPSGARMPHQG-----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQ 82
PG P G P QG + PPG P P + G P G P + PP Q +
Sbjct: 280 PGKPQGP--PPQGGSKSRSSRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 335
Query: 83 SQGQPVPTAP--------ARSRSAK 99
QG P P P ++SRSA+
Sbjct: 336 PQGPPPPGKPQGPPPQGGSKSRSAR 360
Score = 34.7 bits (78), Expect = 0.20
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPP-GQSQAQS 83
PG P G P GPP P G P P G P G P K PPP G S+++S
Sbjct: 239 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRS 296
Query: 84 QGQP 87
P
Sbjct: 297 SRSP 300
Score = 34.3 bits (77), Expect = 0.26
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPPGQSQAQSQ 84
PG P G P GPP P G P P G P G P K PPP +++S
Sbjct: 54 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSP 111
Query: 85 GQP 87
P
Sbjct: 112 RSP 114
Score = 34.3 bits (77), Expect = 0.26
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPP-GQSQAQS 83
PG P G P GPP P G P P G P G P K PPP G ++++S
Sbjct: 115 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRS 172
Query: 84 QGQP 87
P
Sbjct: 173 SRSP 176
Score = 34.3 bits (77), Expect = 0.26
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPP-GQSQAQS 83
PG P G P GPP P G P P G P G P K PPP G S+++S
Sbjct: 301 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRS 358
Query: 84 QGQP 87
P
Sbjct: 359 ARSP 362
Score = 33.9 bits (76), Expect = 0.34
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 28 PGMPSGARMPHQG-----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQ 82
PG P G P QG + PPG P P + G P G P + PP Q +
Sbjct: 156 PGKPQGP--PPQGDNKSRSSRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 211
Query: 83 SQGQPVPTAP 92
QG P P P
Sbjct: 212 PQGPPPPGKP 221
Score = 33.9 bits (76), Expect = 0.34
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 28 PGMPSGARMPHQG-----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQ 82
PG P G P QG + PPG P P + G P G P + PP Q +
Sbjct: 218 PGKPQGP--PPQGDNKSQSARSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 273
Query: 83 SQGQPVPTAP 92
QG P P P
Sbjct: 274 PQGPPPPGKP 283
Score = 33.5 bits (75), Expect = 0.44
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 28 PGMPSGARMPHQGAPMGPP--GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQG 85
PG P G P GPP G P G P + + P K PPP Q Q QG
Sbjct: 198 PGKPQGPPPQGGNKPQGPPPPGKP-QGPPPQGDNKSQSARSPPGKPQGPPP-QGGNQPQG 255
Query: 86 QPVP 89
P P
Sbjct: 256 PPPP 259
Score = 33.1 bits (74), Expect = 0.58
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 28 PGMPSGARMPHQGAPMGPP--GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQG 85
PG P G P GPP G P G P + + P K PPP Q Q QG
Sbjct: 136 PGKPQGPPPQGGNKPQGPPPPGKP-QGPPPQGDNKSRSSRSPPGKPQGPPP-QGGNQPQG 193
Query: 86 QPVP 89
P P
Sbjct: 194 PPPP 197
Score = 32.7 bits (73), Expect = 0.75
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 28 PGMPSGARMPHQGAPMGPP--GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQG 85
PG P G P GPP G P G P + + P K PPP Q Q QG
Sbjct: 260 PGKPQGPPPQGGNKPQGPPPPGKP-QGPPPQGGSKSRSSRSPPGKPQGPPP-QGGNQPQG 317
Query: 86 QPVP 89
P P
Sbjct: 318 PPPP 321
Score = 31.2 bits (69), Expect = 2.2
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 28 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQP 87
PG P G P GPP P + + + P K PPP Q Q QG P
Sbjct: 75 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP-QGGNQPQGPP 133
Query: 88 VP 89
P
Sbjct: 134 PP 135
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,438,795
Number of Sequences: 37866
Number of extensions: 1109727
Number of successful extensions: 9951
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 462
Number of HSP's that attempted gapping in prelim test: 7432
Number of HSP's gapped (non-prelim): 2662
length of query: 483
length of database: 18,247,518
effective HSP length: 106
effective length of query: 377
effective length of database: 14,233,722
effective search space: 5366113194
effective search space used: 5366113194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.