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Search of human proteins with 50845411
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50845411 derlin 3 isoform 2 [Homo sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50845411 derlin 3 isoform 2 [Homo sapiens] 482 e-136
gi|209364542 derlin 3 isoform 1 [Homo sapiens] 419 e-118
gi|50845409 derlin 3 isoform 3 [Homo sapiens] 417 e-117
gi|31455614 Der1-like domain family, member 2 [Homo sapiens] 379 e-105
gi|13236516 Der1-like domain family, member 1 isoform a [Homo sa... 144 7e-35
gi|197927278 Der1-like domain family, member 1 isoform b [Homo s... 116 1e-26
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.16
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.16
gi|4502929 cannabinoid receptor 2 (macrophage) [Homo sapiens] 33 0.28
gi|33286436 gametogenetin [Homo sapiens] 30 1.8
gi|223717985 corticotropin releasing hormone receptor 1 isoform ... 29 3.1
gi|223717978 corticotropin releasing hormone receptor 1 isoform ... 29 3.1
gi|223717971 corticotropin releasing hormone receptor 1 isoform ... 29 3.1
gi|19923245 corticotropin releasing hormone receptor 1 isoform 2... 29 3.1
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 29 4.0
gi|4504465 homeobox B2 [Homo sapiens] 29 4.0
gi|153792074 proline rich 12 [Homo sapiens] 29 4.0
gi|4503459 sphingosine-1-phosphate receptor 4 precursor [Homo sa... 28 5.2
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 28 6.8
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 28 6.8
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 28 6.8
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 28 6.8
gi|223941846 zinc finger protein 652 [Homo sapiens] 28 8.9
gi|7662384 zinc finger protein 652 [Homo sapiens] 28 8.9
gi|25952087 potassium voltage-gated channel, shaker-related subf... 28 8.9
gi|205360947 microtubule associated monoxygenase, calponin and L... 28 8.9
gi|226530313 microtubule associated monoxygenase, calponin and L... 28 8.9
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 28 8.9
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 28 8.9
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 28 8.9
>gi|50845411 derlin 3 isoform 2 [Homo sapiens]
Length = 235
Score = 482 bits (1240), Expect = e-136
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60
MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN
Sbjct: 1 MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60
Query: 61 FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120
FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL
Sbjct: 61 FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120
Query: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180
GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH
Sbjct: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180
Query: 181 IYYFLEDVFPNQPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
IYYFLEDVFPNQPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ
Sbjct: 181 IYYFLEDVFPNQPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
>gi|209364542 derlin 3 isoform 1 [Homo sapiens]
Length = 239
Score = 419 bits (1078), Expect = e-118
Identities = 212/229 (92%), Positives = 214/229 (93%), Gaps = 1/229 (0%)
Query: 1 MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60
MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN
Sbjct: 1 MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60
Query: 61 FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120
FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL
Sbjct: 61 FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120
Query: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180
GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH
Sbjct: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180
Query: 181 IYYFLEDVFPNQPGGKRLLQTPGFLKLLLD-APAEDPNYLPLPEEQPGP 228
IYYFLEDVFPNQPGGKRLLQTPGFL L APA + + Q GP
Sbjct: 181 IYYFLEDVFPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGP 229
>gi|50845409 derlin 3 isoform 3 [Homo sapiens]
Length = 205
Score = 417 bits (1071), Expect = e-117
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60
MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN
Sbjct: 1 MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60
Query: 61 FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120
FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL
Sbjct: 61 FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120
Query: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180
GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH
Sbjct: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180
Query: 181 IYYFLEDVFPNQPGGKRLLQTPGFL 205
IYYFLEDVFPNQPGGKRLLQTPGFL
Sbjct: 181 IYYFLEDVFPNQPGGKRLLQTPGFL 205
>gi|31455614 Der1-like domain family, member 2 [Homo sapiens]
Length = 239
Score = 379 bits (973), Expect = e-105
Identities = 177/227 (77%), Positives = 200/227 (88%)
Query: 1 MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60
MA+Q L E+LQ+P V+RAYT ACVLTTAAVQLEL++PFQLYFNP L+F+ FQ+WRL+TN
Sbjct: 1 MAYQSLRLEYLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITN 60
Query: 61 FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120
FLFFGP+GF+F FNM+F++RYCRMLEEGSFRGRTADFVFMFLFGG LMTL GL SL FL
Sbjct: 61 FLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFL 120
Query: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180
GQA MLVYVWSRR+P VR+NFFGLL FQAPFLPW LMGFSLLLGNSI+VDLLGIAVGH
Sbjct: 121 GQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGH 180
Query: 181 IYYFLEDVFPNQPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPG 227
IY+FLEDVFPNQPGG R+L+TP LK + D P EDPNY PLPEE+PG
Sbjct: 181 IYFFLEDVFPNQPGGIRILKTPSILKAIFDTPDEDPNYNPLPEERPG 227
>gi|13236516 Der1-like domain family, member 1 isoform a [Homo
sapiens]
Length = 251
Score = 144 bits (363), Expect = 7e-35
Identities = 73/199 (36%), Positives = 119/199 (59%), Gaps = 3/199 (1%)
Query: 10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFF--GP- 66
F +PA+TR + AA V +L L+SP L+ P +FQ+WR +T +F GP
Sbjct: 8 FRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPG 67
Query: 67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFLGQALMA 126
GF + N+ F+++Y LE G+F GR AD++FM LF + + + GL + L L+
Sbjct: 68 TGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIM 127
Query: 127 MLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLE 186
++YVW++ + + V+F+ F+A +LPW ++GF+ ++G S++ +L+G VGH+Y+FL
Sbjct: 128 SVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLM 187
Query: 187 DVFPNQPGGKRLLQTPGFL 205
+P GG+ L TP FL
Sbjct: 188 FRYPMDLGGRNFLSTPQFL 206
>gi|197927278 Der1-like domain family, member 1 isoform b [Homo
sapiens]
Length = 231
Score = 116 bits (291), Expect = 1e-26
Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 3/189 (1%)
Query: 10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFF--GP- 66
F +PA+TR + AA V +L L+SP L+ P +FQ+WR +T +F GP
Sbjct: 8 FRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPG 67
Query: 67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFLGQALMA 126
GF + N+ F+++Y LE G+F GR AD++FM LF + + + GL + L L+
Sbjct: 68 TGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIM 127
Query: 127 MLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLE 186
++YVW++ + + V+F+ F+A +LPW ++GF+ ++G S +DL G FL
Sbjct: 128 SVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSYPMDLGGRNFLSTPQFLY 187
Query: 187 DVFPNQPGG 195
P++ GG
Sbjct: 188 RWLPSRRGG 196
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 33.5 bits (75), Expect = 0.16
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 190 PNQPG-GKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
P QPG K Q PG K P++ P P +QPGP P PQQ
Sbjct: 481 PQQPGPAKPPPQQPGSAK----PPSQQPGSTKPPPQQPGPAKPSPQQ 523
Score = 32.0 bits (71), Expect = 0.47
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 192 QPG-GKRLLQT--PGFLKLLLDAPAEDPNYLP----LPEEQPGPHLPPPQQ 235
QPG GK Q PG P + P+ LP P +QPGP PPPQQ
Sbjct: 443 QPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQ 493
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 14/44 (31%)
Query: 192 QPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
QPG K L Q PG K P +QPGP PP QQ
Sbjct: 385 QPGPKALAQPPGVGKT--------------PAQQPGPAKPPTQQ 414
Score = 29.6 bits (65), Expect = 2.3
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 190 PNQPGG--KRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
P QP G K L Q PG +K P + P P + GP PP QQ
Sbjct: 332 PAQPSGLTKPLAQQPGTVK----PPVQPPGTTKPPAQPLGPAKPPAQQ 375
Score = 29.6 bits (65), Expect = 2.3
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 190 PNQPGG--KRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
P Q G K L Q PG L +PA+ P P +QPGP P QQ
Sbjct: 411 PTQQVGTPKPLAQQPG-----LQSPAKAPGPTKTPVQQPGPGKIPAQQ 453
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 33.5 bits (75), Expect = 0.16
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 190 PNQPG-GKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
P QPG K Q PG K P++ P P +QPGP P PQQ
Sbjct: 481 PQQPGPAKPPPQQPGSAK----PPSQQPGSTKPPPQQPGPAKPSPQQ 523
Score = 32.0 bits (71), Expect = 0.47
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 192 QPG-GKRLLQT--PGFLKLLLDAPAEDPNYLP----LPEEQPGPHLPPPQQ 235
QPG GK Q PG P + P+ LP P +QPGP PPPQQ
Sbjct: 443 QPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQ 493
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 14/44 (31%)
Query: 192 QPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
QPG K L Q PG K P +QPGP PP QQ
Sbjct: 385 QPGPKALAQPPGVGKT--------------PAQQPGPAKPPTQQ 414
Score = 29.6 bits (65), Expect = 2.3
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 190 PNQPGG--KRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
P QP G K L Q PG +K P + P P + GP PP QQ
Sbjct: 332 PAQPSGLTKPLAQQPGTVK----PPVQPPGTTKPPAQPLGPAKPPAQQ 375
Score = 29.6 bits (65), Expect = 2.3
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 190 PNQPGG--KRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
P Q G K L Q PG L +PA+ P P +QPGP P QQ
Sbjct: 411 PTQQVGTPKPLAQQPG-----LQSPAKAPGPTKTPVQQPGPGKIPAQQ 453
>gi|4502929 cannabinoid receptor 2 (macrophage) [Homo sapiens]
Length = 360
Score = 32.7 bits (73), Expect = 0.28
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 21 TAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGPL-GFSFFFNMLFVF 79
TA VL T L LLS + +L+ Q+ R ++LF G L G F +++F
Sbjct: 34 TAVAVLCTL---LGLLSALENVAVLYLILSSHQL-RRKPSYLFIGSLAGADFLASVVFA- 88
Query: 80 RYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL 117
C + F G + VF+ G V MT +GSL
Sbjct: 89 --CSFVNFHVFHGVDSKAVFLLKIGSVTMTFTASVGSL 124
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 30.0 bits (66), Expect = 1.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 212 PAEDPNYLPLPEEQPGPHLPPPQQ 235
P P+ LPL E+P P +PPP++
Sbjct: 66 PQASPSTLPLTLERPSPVMPPPEE 89
>gi|223717985 corticotropin releasing hormone receptor 1 isoform 4
[Homo sapiens]
Length = 401
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 59 TNFLFFGPLGFSFFFNMLFVFRYCRMLE---EGSFRGRTADFVFMFLFGGVLMTLLGLLG 115
T++++ GP+ N +F+F R+L S T + VL+ LLG+
Sbjct: 268 TDYIYQGPMILVLLINFIFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITY 327
Query: 116 SLFFL--GQALMAMLVYVW 132
LFF+ G+ ++ +V+++
Sbjct: 328 MLFFVNPGEDEVSRVVFIY 346
>gi|223717978 corticotropin releasing hormone receptor 1 isoform 3
[Homo sapiens]
Length = 375
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 59 TNFLFFGPLGFSFFFNMLFVFRYCRMLE---EGSFRGRTADFVFMFLFGGVLMTLLGLLG 115
T++++ GP+ N +F+F R+L S T + VL+ LLG+
Sbjct: 228 TDYIYQGPMILVLLINFIFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITY 287
Query: 116 SLFFL--GQALMAMLVYVW 132
LFF+ G+ ++ +V+++
Sbjct: 288 MLFFVNPGEDEVSRVVFIY 306
>gi|223717971 corticotropin releasing hormone receptor 1 isoform 1
[Homo sapiens]
Length = 444
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 59 TNFLFFGPLGFSFFFNMLFVFRYCRMLE---EGSFRGRTADFVFMFLFGGVLMTLLGLLG 115
T++++ GP+ N +F+F R+L S T + VL+ LLG+
Sbjct: 297 TDYIYQGPMILVLLINFIFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITY 356
Query: 116 SLFFL--GQALMAMLVYVW 132
LFF+ G+ ++ +V+++
Sbjct: 357 MLFFVNPGEDEVSRVVFIY 375
>gi|19923245 corticotropin releasing hormone receptor 1 isoform 2
[Homo sapiens]
Length = 415
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 59 TNFLFFGPLGFSFFFNMLFVFRYCRMLE---EGSFRGRTADFVFMFLFGGVLMTLLGLLG 115
T++++ GP+ N +F+F R+L S T + VL+ LLG+
Sbjct: 268 TDYIYQGPMILVLLINFIFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITY 327
Query: 116 SLFFL--GQALMAMLVYVW 132
LFF+ G+ ++ +V+++
Sbjct: 328 MLFFVNPGEDEVSRVVFIY 346
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 28.9 bits (63), Expect = 4.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 190 PNQPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPH 229
P QPG K +TP PA P +PLP P PH
Sbjct: 3226 PQQPG-KEAAKTPDAKAAPTPTPAPVPVPVPLPAPAPAPH 3264
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 28.9 bits (63), Expect = 4.0
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 186 EDVFPNQPGGKRLLQTPGFLKLLLDAPA-EDPNYLPLPEEQPGPHLP 231
E FP+ G LQ P K D PA P PLP P P P
Sbjct: 50 EQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFP 96
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 28.9 bits (63), Expect = 4.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 207 LLLDAPAEDPNYLPLPEEQPGPHLPPPQ 234
LL + P P P P+ QP P PPPQ
Sbjct: 1452 LLEEKPPPTPPPAPTPQPQPPPPPPPPQ 1479
>gi|4503459 sphingosine-1-phosphate receptor 4 precursor [Homo
sapiens]
Length = 384
Score = 28.5 bits (62), Expect = 5.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 100 MFLFGGVLMTLLGLLGSLFFLGQA 123
+ +F GVL T++GL G++F L QA
Sbjct: 209 LVIFAGVLATIMGLYGAIFRLVQA 232
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 28.1 bits (61), Expect = 6.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 211 APAEDPNYLPLPEEQPGPHLPPPQQ 235
APA P P P +QP P PP QQ
Sbjct: 749 APAPVPQQPPPPPQQPPPPPPPQQQ 773
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 28.1 bits (61), Expect = 6.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 190 PNQPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPP 233
P QP ++ P + L AP P P P P P PPP
Sbjct: 1971 PPQPSSMGPVKIPNTVSTPLQAPPPTPPPPPPPPPPPPPPPPPP 2014
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 28.1 bits (61), Expect = 6.8
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 190 PNQPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPG-PHLPPP 233
P PGG + P AP P + P P QPG PH P P
Sbjct: 19 PGYPGGPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSP 63
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 28.1 bits (61), Expect = 6.8
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 190 PNQPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPG-PHLPPP 233
P PGG + P AP P + P P QPG PH P P
Sbjct: 19 PGYPGGPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSP 63
>gi|223941846 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 27.7 bits (60), Expect = 8.9
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 216 PNYLPLPEEQPGPHLPPP 233
P++LP+P P PHLPPP
Sbjct: 559 PHHLPIP---PVPHLPPP 573
>gi|7662384 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 27.7 bits (60), Expect = 8.9
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 216 PNYLPLPEEQPGPHLPPP 233
P++LP+P P PHLPPP
Sbjct: 559 PHHLPIP---PVPHLPPP 573
>gi|25952087 potassium voltage-gated channel, shaker-related
subfamily, member 5 [Homo sapiens]
Length = 613
Score = 27.7 bits (60), Expect = 8.9
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 212 PAEDPNYLPLP---EEQPGPHLPPPQ 234
P DP PLP EE P P PPP+
Sbjct: 69 PLPDPGVRPLPPLPEELPRPRRPPPE 94
>gi|205360947 microtubule associated monoxygenase, calponin and LIM
domain containing 1 isoform 1 [Homo sapiens]
Length = 1067
Score = 27.7 bits (60), Expect = 8.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 196 KRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
K + G KL L+ AE P+ P+ +PG L PP Q
Sbjct: 648 KENAEDAGGKKLRLEMEAETPSTEVPPDPEPGVPLTPPSQ 687
>gi|226530313 microtubule associated monoxygenase, calponin and LIM
domain containing 1 isoform 2 [Homo sapiens]
Length = 981
Score = 27.7 bits (60), Expect = 8.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 196 KRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ 235
K + G KL L+ AE P+ P+ +PG L PP Q
Sbjct: 562 KENAEDAGGKKLRLEMEAETPSTEVPPDPEPGVPLTPPSQ 601
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 27.7 bits (60), Expect = 8.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 212 PAEDPNYLPLPEEQPGPHLPPPQQ 235
P + P P P+ Q P PPPQQ
Sbjct: 1675 PQQQPQQQPQPQPQQPPPPPPPQQ 1698
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 27.7 bits (60), Expect = 8.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 212 PAEDPNYLPLPEEQPGPHLPPPQQ 235
P + P P P+ Q P PPPQQ
Sbjct: 1675 PQQQPQQQPQPQPQQPPPPPPPQQ 1698
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 27.7 bits (60), Expect = 8.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 212 PAEDPNYLPLPEEQPGPHLPPPQQ 235
P + P P P+ Q P PPPQQ
Sbjct: 1675 PQQQPQQQPQPQPQQPPPPPPPQQ 1698
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.332 0.148 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,802,073
Number of Sequences: 37866
Number of extensions: 482861
Number of successful extensions: 2360
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2274
Number of HSP's gapped (non-prelim): 82
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.