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Search of human proteins with 50726994
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50726994 stromal antigen 3-like 1 isoform 1 [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50726994 stromal antigen 3-like 1 isoform 1 [Homo sapiens] 424 e-119
gi|57863310 stromal antigen 3 [Homo sapiens] 320 7e-88
gi|50726989 stromal antigen 3-like 1 isoform 2 [Homo sapiens] 308 3e-84
gi|148226757 STAG3-like [Homo sapiens] 237 6e-63
gi|148236295 stromal antigen 3-like 3 [Homo sapiens] 233 1e-61
gi|31563531 stromal antigen 2 isoform b [Homo sapiens] 192 2e-49
gi|112789530 stromal antigen 2 isoform b [Homo sapiens] 192 2e-49
gi|112789528 stromal antigen 2 isoform a [Homo sapiens] 192 2e-49
gi|112789526 stromal antigen 2 isoform a [Homo sapiens] 192 2e-49
gi|62243696 stromal antigen 1 [Homo sapiens] 187 4e-48
gi|22027651 adaptor-related protein complex 1 beta 1 subunit iso... 29 3.2
gi|22027653 adaptor-related protein complex 1 beta 1 subunit iso... 29 3.2
gi|57222563 colonic and hepatic tumor over-expressed protein iso... 28 5.5
gi|57164942 colonic and hepatic tumor over-expressed protein iso... 28 5.5
gi|71773106 adaptor-related protein complex 2, beta 1 subunit is... 28 5.5
gi|4557469 adaptor-related protein complex 2, beta 1 subunit iso... 28 5.5
>gi|50726994 stromal antigen 3-like 1 isoform 1 [Homo sapiens]
Length = 205
Score = 424 bits (1091), Expect = e-119
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV
Sbjct: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
Query: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKLFYP 120
RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKLFYP
Sbjct: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKLFYP 120
Query: 121 ECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLKDWEGL 180
ECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLKDWEGL
Sbjct: 121 ECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLKDWEGL 180
Query: 181 TSLLLEKDQSTCHMEPGPGTFHLLG 205
TSLLLEKDQSTCHMEPGPGTFHLLG
Sbjct: 181 TSLLLEKDQSTCHMEPGPGTFHLLG 205
>gi|57863310 stromal antigen 3 [Homo sapiens]
Length = 1225
Score = 320 bits (819), Expect = 7e-88
Identities = 163/212 (76%), Positives = 170/212 (80%), Gaps = 36/212 (16%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVR+KCVKALKGLYGN
Sbjct: 314 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRLKCVKALKGLYGN 373
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL------------------- 115
RDLT RLELFT RFKD MVSM++DREY VAVEAVRLLILIL
Sbjct: 374 RDLTTRLELFTSRFKDRMVSMVMDREYDVAVEAVRLLILILKNMEGVLTDADCESVYPVV 433
Query: 116 -----------------KLFYPECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDH 158
KLFYPECEIR MGGREQRQSPGAQRTFFQLLLSFFVES+LHDH
Sbjct: 434 YASHRGLASAAGEFLYWKLFYPECEIRMMGGREQRQSPGAQRTFFQLLLSFFVESELHDH 493
Query: 159 AAYLVDNLWDCAGTQLKDWEGLTSLLLEKDQS 190
AAYLVD+LWDCAG +LKDWEGLTSLLLEKDQ+
Sbjct: 494 AAYLVDSLWDCAGARLKDWEGLTSLLLEKDQN 525
>gi|50726989 stromal antigen 3-like 1 isoform 2 [Homo sapiens]
Length = 151
Score = 308 bits (788), Expect = 3e-84
Identities = 149/150 (99%), Positives = 150/150 (100%)
Query: 56 KHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL 115
+HREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL
Sbjct: 2 QHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL 61
Query: 116 KLFYPECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLK 175
KLFYPECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLK
Sbjct: 62 KLFYPECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLK 121
Query: 176 DWEGLTSLLLEKDQSTCHMEPGPGTFHLLG 205
DWEGLTSLLLEKDQSTCHMEPGPGTFHLLG
Sbjct: 122 DWEGLTSLLLEKDQSTCHMEPGPGTFHLLG 151
>gi|148226757 STAG3-like [Homo sapiens]
Length = 134
Score = 237 bits (604), Expect = 6e-63
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV
Sbjct: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
Query: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK 116
RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK
Sbjct: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK 116
>gi|148236295 stromal antigen 3-like 3 [Homo sapiens]
Length = 134
Score = 233 bits (593), Expect = 1e-61
Identities = 114/116 (98%), Positives = 115/116 (99%)
Query: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV
Sbjct: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
Query: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK 116
RVKCVKALKGLYGNRDLTARLELFTG FKDWMVSMI+DREYSVAVEAVRLLILILK
Sbjct: 61 RVKCVKALKGLYGNRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILK 116
>gi|31563531 stromal antigen 2 isoform b [Homo sapiens]
Length = 1231
Score = 192 bits (488), Expect = 2e-49
Identities = 104/213 (48%), Positives = 135/213 (63%), Gaps = 39/213 (18%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK-----LFYPECE------ 123
++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L+ L +CE
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
Query: 124 ------IRTMGG--------------------REQRQSPGAQRTFFQLLLSFFVESKLHD 157
+ G R RQ P A + L+ FF+ES+LH+
Sbjct: 418 YSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKRRGRQGPNAN--LVKTLVFFFLESELHE 475
Query: 158 HAAYLVDNLWDCAGTQLKDWEGLTSLLLEKDQS 190
HAAYLVD++WDCA LKDWE + SLLLE+ S
Sbjct: 476 HAAYLVDSMWDCATELLKDWECMNSLLLEEPLS 508
>gi|112789530 stromal antigen 2 isoform b [Homo sapiens]
Length = 1231
Score = 192 bits (488), Expect = 2e-49
Identities = 104/213 (48%), Positives = 135/213 (63%), Gaps = 39/213 (18%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK-----LFYPECE------ 123
++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L+ L +CE
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
Query: 124 ------IRTMGG--------------------REQRQSPGAQRTFFQLLLSFFVESKLHD 157
+ G R RQ P A + L+ FF+ES+LH+
Sbjct: 418 YSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKRRGRQGPNAN--LVKTLVFFFLESELHE 475
Query: 158 HAAYLVDNLWDCAGTQLKDWEGLTSLLLEKDQS 190
HAAYLVD++WDCA LKDWE + SLLLE+ S
Sbjct: 476 HAAYLVDSMWDCATELLKDWECMNSLLLEEPLS 508
>gi|112789528 stromal antigen 2 isoform a [Homo sapiens]
Length = 1268
Score = 192 bits (488), Expect = 2e-49
Identities = 104/213 (48%), Positives = 135/213 (63%), Gaps = 39/213 (18%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK-----LFYPECE------ 123
++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L+ L +CE
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
Query: 124 ------IRTMGG--------------------REQRQSPGAQRTFFQLLLSFFVESKLHD 157
+ G R RQ P A + L+ FF+ES+LH+
Sbjct: 418 YSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKRRGRQGPNAN--LVKTLVFFFLESELHE 475
Query: 158 HAAYLVDNLWDCAGTQLKDWEGLTSLLLEKDQS 190
HAAYLVD++WDCA LKDWE + SLLLE+ S
Sbjct: 476 HAAYLVDSMWDCATELLKDWECMNSLLLEEPLS 508
>gi|112789526 stromal antigen 2 isoform a [Homo sapiens]
Length = 1268
Score = 192 bits (488), Expect = 2e-49
Identities = 104/213 (48%), Positives = 135/213 (63%), Gaps = 39/213 (18%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK-----LFYPECE------ 123
++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L+ L +CE
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
Query: 124 ------IRTMGG--------------------REQRQSPGAQRTFFQLLLSFFVESKLHD 157
+ G R RQ P A + L+ FF+ES+LH+
Sbjct: 418 YSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKRRGRQGPNAN--LVKTLVFFFLESELHE 475
Query: 158 HAAYLVDNLWDCAGTQLKDWEGLTSLLLEKDQS 190
HAAYLVD++WDCA LKDWE + SLLLE+ S
Sbjct: 476 HAAYLVDSMWDCATELLKDWECMNSLLLEEPLS 508
>gi|62243696 stromal antigen 1 [Homo sapiens]
Length = 1258
Score = 187 bits (476), Expect = 4e-48
Identities = 104/212 (49%), Positives = 132/212 (62%), Gaps = 42/212 (19%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWTLHD+ EVR+KC+KAL+ LY N
Sbjct: 301 RDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKCLKALQSLYTN 360
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL------------------- 115
R+L +LELFT RFKD +VSM +D+EY VAVEA+RL+ LIL
Sbjct: 361 RELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGSEEALSNEDCENVYHLV 420
Query: 116 -----------------KLFY---PECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKL 155
KLF P+ E + R R SP ++L+ FF+ES+L
Sbjct: 421 YSAHRPVAVAAGEFLHKKLFSRHDPQAE-EALAKRRGRNSPNG--NLIRMLVLFFLESEL 477
Query: 156 HDHAAYLVDNLWDCAGTQLKDWEGLTSLLLEK 187
H+HAAYLVD+LW+ + LKDWE +T LLLE+
Sbjct: 478 HEHAAYLVDSLWESSQELLKDWECMTELLLEE 509
>gi|22027651 adaptor-related protein complex 1 beta 1 subunit
isoform a [Homo sapiens]
Length = 949
Score = 28.9 bits (63), Expect = 3.2
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLL 111
D+ A+L G F D + +I D V AV L
Sbjct: 150 --DINAQLVEDQG-FLDTLKDLISDSNPMVVANAVAAL 184
>gi|22027653 adaptor-related protein complex 1 beta 1 subunit
isoform b [Homo sapiens]
Length = 942
Score = 28.9 bits (63), Expect = 3.2
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLL 111
D+ A+L G F D + +I D V AV L
Sbjct: 150 --DINAQLVEDQG-FLDTLKDLISDSNPMVVANAVAAL 184
>gi|57222563 colonic and hepatic tumor over-expressed protein isoform
b [Homo sapiens]
Length = 1972
Score = 28.1 bits (61), Expect = 5.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 22 RAICIEEIGCWMQSYSTSFLTDS---YLKYIGWTLHDKHREVRVKCVKALKGLY 72
RA C+EE+GC ++SY + + LK I + D+ VR + + +Y
Sbjct: 1341 RAECLEELGCLVESYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVY 1394
>gi|57164942 colonic and hepatic tumor over-expressed protein isoform
a [Homo sapiens]
Length = 2032
Score = 28.1 bits (61), Expect = 5.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 22 RAICIEEIGCWMQSYSTSFLTDS---YLKYIGWTLHDKHREVRVKCVKALKGLY 72
RA C+EE+GC ++SY + + LK I + D+ VR + + +Y
Sbjct: 1341 RAECLEELGCLVESYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVY 1394
>gi|71773106 adaptor-related protein complex 2, beta 1 subunit
isoform a [Homo sapiens]
Length = 951
Score = 28.1 bits (61), Expect = 5.5
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLL 111
D+ A++ G F D + +I D V AV L
Sbjct: 150 --DINAQMVEDQG-FLDSLRDLIADSNPMVVANAVAAL 184
>gi|4557469 adaptor-related protein complex 2, beta 1 subunit
isoform b [Homo sapiens]
Length = 937
Score = 28.1 bits (61), Expect = 5.5
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLL 111
D+ A++ G F D + +I D V AV L
Sbjct: 150 --DINAQMVEDQG-FLDSLRDLIADSNPMVVANAVAAL 184
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,964,088
Number of Sequences: 37866
Number of extensions: 306106
Number of successful extensions: 766
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 22
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.