Search of human proteins with 5031865

Search of human proteins with 5031865

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5031865 lipoma HMGIC fusion partner [Homo sapiens]
         (200 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5031865 lipoma HMGIC fusion partner [Homo sapiens]                 429   e-120
gi|30039704 lipoma HMGIC fusion partner-like 1 [Homo sapiens]         283   5e-77
gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens]          96   3e-20
gi|38348398 lipoma HMGIC fusion partner-like 4 [Homo sapiens]          89   2e-18
gi|39752685 lipoma HMGIC fusion partner-like 3 [Homo sapiens]          86   3e-17
gi|32698930 lipoma HMGIC fusion partner-like 5 [Homo sapiens]          74   6e-14
gi|48717249 transmembrane protein 211 [Homo sapiens]                   37   0.011
gi|225703142 claudin 14 [Homo sapiens]                                 30   1.8  
gi|21536294 claudin 14 [Homo sapiens]                                  30   1.8  
gi|225703138 claudin 14 [Homo sapiens]                                 30   1.8  
gi|6912314 claudin 14 [Homo sapiens]                                   30   1.8  
gi|225703140 claudin 14 [Homo sapiens]                                 30   1.8  
gi|31657114 armadillo repeat containing 4 [Homo sapiens]               29   2.3  
gi|197276625 solute carrier family 6 (neurotransmitter transport...    28   5.2  
gi|197276623 solute carrier family 6 (neurotransmitter transport...    28   5.2  
gi|54607094 solute carrier family 6 (neurotransmitter transporte...    28   5.2  
gi|13899273 transmembrane protein 47 [Homo sapiens]                    28   5.2  
gi|9789987 potassium voltage-gated channel, Shal-related subfami...    28   6.8  
gi|171184408 solute carrier family 6 (neurotransmitter transport...    28   6.8  
gi|171184406 solute carrier family 6 (neurotransmitter transport...    28   6.8  
gi|171184404 solute carrier family 6 (neurotransmitter transport...    28   6.8  
gi|21361581 solute carrier family 6 (neurotransmitter transporte...    27   8.9  
gi|134304856 solute carrier family 6, member 7 [Homo sapiens]          27   8.9  

>gi|5031865 lipoma HMGIC fusion partner [Homo sapiens]
          Length = 200

 Score =  429 bits (1102), Expect = e-120
 Identities = 200/200 (100%), Positives = 200/200 (100%)

Query: 1   MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQ 60
           MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQ
Sbjct: 1   MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQ 60

Query: 61  MMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGCCVSDLISRTVGRV 120
           MMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGCCVSDLISRTVGRV
Sbjct: 61  MMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGCCVSDLISRTVGRV 120

Query: 121 AGGIQFLGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAA 180
           AGGIQFLGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAA
Sbjct: 121 AGGIQFLGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAA 180

Query: 181 MLLCTWLACFSGKKQKHYPY 200
           MLLCTWLACFSGKKQKHYPY
Sbjct: 181 MLLCTWLACFSGKKQKHYPY 200


>gi|30039704 lipoma HMGIC fusion partner-like 1 [Homo sapiens]
          Length = 220

 Score =  283 bits (725), Expect = 5e-77
 Identities = 125/196 (63%), Positives = 151/196 (77%), Gaps = 1/196 (0%)

Query: 1   MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQ 60
           M SSLT  G +WA LS + A TS   +F+PYWL+GSQ+GKPVSF TFRRC+YPV  E   
Sbjct: 1   MRSSLTMVGTLWAFLSLVTAVTSSTSYFLPYWLFGSQMGKPVSFSTFRRCNYPVRGEGHS 60

Query: 61  MMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGCCVSDLISRTVGRV 120
           + +MVEECGRYASF  IPS  W++CT+VTG GC LLLLVAL A++GCC+ +LISR +GR 
Sbjct: 61  L-IMVEECGRYASFNAIPSLAWQMCTVVTGAGCALLLLVALAAVLGCCMEELISRMMGRC 119

Query: 121 AGGIQFLGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAA 180
            G  QF+GGLLI +GCALYPLGW+S E+ QTCG  S QF LG C +GWAYYC G GA AA
Sbjct: 120 MGAAQFVGGLLISSGCALYPLGWNSPEIMQTCGNVSNQFQLGTCRLGWAYYCAGGGAAAA 179

Query: 181 MLLCTWLACFSGKKQK 196
           ML+CTWL+CF+G+  K
Sbjct: 180 MLICTWLSCFAGRNPK 195


>gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens]
          Length = 228

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 24/208 (11%)

Query: 5   LTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQL------------GKPVSF----GTFR 48
           +TC  ++W LLS + A    + F    WL G               G P  +    G + 
Sbjct: 6   VTCRSMLWTLLSIVVAFAELIAFMSADWLIGKARSRGGVEPAGPGGGSPEPYHPTLGIYA 65

Query: 49  RCSYPVHDESRQMMVMVEECGRYA-SFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGC 107
           RC   + +   Q       CG YA SF  I S  W+   I   +G  +L +VAL ++   
Sbjct: 66  RC---IRNPGVQHFQRDTLCGPYAESFGEIASGFWQATAIFLAVGIFILCMVALVSVFTM 122

Query: 108 CVSDLISRTVGRVAGGIQFLGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIG 167
           CV  ++ +++  V G +Q + GL +  G  LYP GW  ++    CG+ +  +  G C +G
Sbjct: 123 CVQSIMKKSIFNVCGLLQGIAGLFLILGLILYPAGWGCQKAIDYCGHYASAYKPGDCSLG 182

Query: 168 WAYYCTGAGATAAMLLCTWLACFSGKKQ 195
           WA+Y T  G T    +C   A FS + +
Sbjct: 183 WAFY-TAIGGTVLTFIC---AVFSAQAE 206


>gi|38348398 lipoma HMGIC fusion partner-like 4 [Homo sapiens]
          Length = 247

 Score = 89.0 bits (219), Expect = 2e-18
 Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 20/193 (10%)

Query: 9   GVIWALLSFLCAATSCVGFFMPYWLWGS-QLGKPVSFGTFRRCSYPVHDESRQMMVMVEE 67
           GV+WA+ +   A  + V F  PYW+  S    KP  FG F  C        R++      
Sbjct: 23  GVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYC-VGSGLAGRELTCR--- 78

Query: 68  CGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGC--CVSDLI---SRTVGRVAG 122
            G +  F  IPS+ ++             +L+++  ++GC  C S      + TV ++  
Sbjct: 79  -GSFTDFSTIPSSAFK--------AAAFFVLLSMVLILGCITCFSLFFFCNTATVYKICA 129

Query: 123 GIQFLGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAAML 182
            +Q L  L +  GC ++P GWD+E +R  CG  +G++ LG C + WAY     G   A++
Sbjct: 130 WMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGILNALI 189

Query: 183 LCTWLACFSGKKQ 195
           L ++LA   G +Q
Sbjct: 190 L-SFLAFVLGNRQ 201


>gi|39752685 lipoma HMGIC fusion partner-like 3 [Homo sapiens]
          Length = 236

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 17/191 (8%)

Query: 9   GVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVS--FGTFRRCSYPVHDESRQMMVMVE 66
           GV+WA+ +   A  + V F  PYW+ G  +  P +  FG F  C    +  SR++     
Sbjct: 37  GVLWAIFTICFAIVNVVCFIQPYWI-GDGVDTPQAGYFGLFHYCIG--NGFSRELTCR-- 91

Query: 67  ECGRYASFQGIPSAEWRICTIVTGLGCGLLL--LVALTALMGCCVSDLISRTVGRVAGGI 124
             G +  F  +PS  ++  +   GL   L++  ++  T    C  +     TV ++   +
Sbjct: 92  --GSFTDFSTLPSGAFKAASFFIGLSMMLIIACIICFTLFFFCNTA-----TVYKICAWM 144

Query: 125 QFLGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAAMLLC 184
           Q      +  GC ++P GWDS+EV++ CG  + ++ LG C + WAY     G   A++L 
Sbjct: 145 QLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAIIGILDALIL- 203

Query: 185 TWLACFSGKKQ 195
           ++LA   G +Q
Sbjct: 204 SFLAFVLGNRQ 214


>gi|32698930 lipoma HMGIC fusion partner-like 5 [Homo sapiens]
          Length = 219

 Score = 74.3 bits (181), Expect = 6e-14
 Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 13/189 (6%)

Query: 9   GVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQMMVMVEEC 68
           GV+W  L+   +      F  PYW+ G  +  P + G F   SY V +     ++     
Sbjct: 26  GVMWGTLTICFSVLVMALFIQPYWI-GDSVNTPQA-GYFGLFSYCVGNVLSSELICK--- 80

Query: 69  GRYASFQGIPSAEWRICTIVTGLGCGLLL--LVALTALMGCCVSDLISRTVGRVAGGIQF 126
           G    F  IPS  ++       LG  L++  ++  +    C  +     TV ++   +Q 
Sbjct: 81  GGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFICNTA-----TVYKICAWMQL 135

Query: 127 LGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAAMLLCTW 186
                +  GC +YP GWDS EVR+ CG  +G++ LG C I WA+         A++L ++
Sbjct: 136 AAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLAILSIGDALIL-SF 194

Query: 187 LACFSGKKQ 195
           LA   G +Q
Sbjct: 195 LAFVLGYRQ 203


>gi|48717249 transmembrane protein 211 [Homo sapiens]
          Length = 129

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 123 GIQFLGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAAML 182
           G+Q +    +  G  ++P+G  S  +++ C  +S  +  GKC +GW Y      A  A L
Sbjct: 37  GVQAVAATAMIVGLLIFPIGLASPFIKEVCEASSMYYG-GKCRLGWGYMTAILNAVLASL 95

Query: 183 L 183
           L
Sbjct: 96  L 96


>gi|225703142 claudin 14 [Homo sapiens]
          Length = 239

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 30/208 (14%)

Query: 6   TCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLG----KPVSF--GTFRRCSYPVHDESR 59
           T   ++  LLSFL    + +   +P+W   + +G      VS+  G +  C +  H    
Sbjct: 4   TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVW--HSTG- 60

Query: 60  QMMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGC----CVSDLISR 115
                + +C  Y S   +P  + +    +  + C L  +    A++G     C     ++
Sbjct: 61  -----IYQCQIYRSLLALPQ-DLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAK 114

Query: 116 TVGRVAGGIQF-LGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLG-KCEIGWAYYCT 173
           T   + GG  F L GLL      +  + W + +V Q   + +     G K EIG A Y  
Sbjct: 115 TTFAILGGTLFILAGLL-----CMVAVSWTTNDVVQ--NFYNPLLPSGMKFEIGQALY-L 166

Query: 174 GAGATAAMLLCTWLACFSGKKQKHY-PY 200
           G  +++  L+   L C S + +  Y PY
Sbjct: 167 GFISSSLSLIGGTLLCLSCQDEAPYRPY 194


>gi|21536294 claudin 14 [Homo sapiens]
          Length = 239

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 30/208 (14%)

Query: 6   TCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLG----KPVSF--GTFRRCSYPVHDESR 59
           T   ++  LLSFL    + +   +P+W   + +G      VS+  G +  C +  H    
Sbjct: 4   TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVW--HSTG- 60

Query: 60  QMMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGC----CVSDLISR 115
                + +C  Y S   +P  + +    +  + C L  +    A++G     C     ++
Sbjct: 61  -----IYQCQIYRSLLALPQ-DLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAK 114

Query: 116 TVGRVAGGIQF-LGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLG-KCEIGWAYYCT 173
           T   + GG  F L GLL      +  + W + +V Q   + +     G K EIG A Y  
Sbjct: 115 TTFAILGGTLFILAGLL-----CMVAVSWTTNDVVQ--NFYNPLLPSGMKFEIGQALY-L 166

Query: 174 GAGATAAMLLCTWLACFSGKKQKHY-PY 200
           G  +++  L+   L C S + +  Y PY
Sbjct: 167 GFISSSLSLIGGTLLCLSCQDEAPYRPY 194


>gi|225703138 claudin 14 [Homo sapiens]
          Length = 239

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 30/208 (14%)

Query: 6   TCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLG----KPVSF--GTFRRCSYPVHDESR 59
           T   ++  LLSFL    + +   +P+W   + +G      VS+  G +  C +  H    
Sbjct: 4   TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVW--HSTG- 60

Query: 60  QMMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGC----CVSDLISR 115
                + +C  Y S   +P  + +    +  + C L  +    A++G     C     ++
Sbjct: 61  -----IYQCQIYRSLLALPQ-DLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAK 114

Query: 116 TVGRVAGGIQF-LGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLG-KCEIGWAYYCT 173
           T   + GG  F L GLL      +  + W + +V Q   + +     G K EIG A Y  
Sbjct: 115 TTFAILGGTLFILAGLL-----CMVAVSWTTNDVVQ--NFYNPLLPSGMKFEIGQALY-L 166

Query: 174 GAGATAAMLLCTWLACFSGKKQKHY-PY 200
           G  +++  L+   L C S + +  Y PY
Sbjct: 167 GFISSSLSLIGGTLLCLSCQDEAPYRPY 194


>gi|6912314 claudin 14 [Homo sapiens]
          Length = 239

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 30/208 (14%)

Query: 6   TCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLG----KPVSF--GTFRRCSYPVHDESR 59
           T   ++  LLSFL    + +   +P+W   + +G      VS+  G +  C +  H    
Sbjct: 4   TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVW--HSTG- 60

Query: 60  QMMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGC----CVSDLISR 115
                + +C  Y S   +P  + +    +  + C L  +    A++G     C     ++
Sbjct: 61  -----IYQCQIYRSLLALPQ-DLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAK 114

Query: 116 TVGRVAGGIQF-LGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLG-KCEIGWAYYCT 173
           T   + GG  F L GLL      +  + W + +V Q   + +     G K EIG A Y  
Sbjct: 115 TTFAILGGTLFILAGLL-----CMVAVSWTTNDVVQ--NFYNPLLPSGMKFEIGQALY-L 166

Query: 174 GAGATAAMLLCTWLACFSGKKQKHY-PY 200
           G  +++  L+   L C S + +  Y PY
Sbjct: 167 GFISSSLSLIGGTLLCLSCQDEAPYRPY 194


>gi|225703140 claudin 14 [Homo sapiens]
          Length = 239

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 30/208 (14%)

Query: 6   TCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLG----KPVSF--GTFRRCSYPVHDESR 59
           T   ++  LLSFL    + +   +P+W   + +G      VS+  G +  C +  H    
Sbjct: 4   TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVW--HSTG- 60

Query: 60  QMMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGC----CVSDLISR 115
                + +C  Y S   +P  + +    +  + C L  +    A++G     C     ++
Sbjct: 61  -----IYQCQIYRSLLALPQ-DLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAK 114

Query: 116 TVGRVAGGIQF-LGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLG-KCEIGWAYYCT 173
           T   + GG  F L GLL      +  + W + +V Q   + +     G K EIG A Y  
Sbjct: 115 TTFAILGGTLFILAGLL-----CMVAVSWTTNDVVQ--NFYNPLLPSGMKFEIGQALY-L 166

Query: 174 GAGATAAMLLCTWLACFSGKKQKHY-PY 200
           G  +++  L+   L C S + +  Y PY
Sbjct: 167 GFISSSLSLIGGTLLCLSCQDEAPYRPY 194


>gi|31657114 armadillo repeat containing 4 [Homo sapiens]
          Length = 1044

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 97  LLVALTALMGCCVSDLISRTVGRVAGGIQFLGGLLIGAGCAL 138
           +LV +   +G C  +  +R + R  GGIQ L  LL+G   AL
Sbjct: 772 VLVNVVGALGECCQERENRVIVRKCGGIQPLVNLLVGINQAL 813


>gi|197276625 solute carrier family 6 (neurotransmitter transporter,
           taurine), member 6 isoform b [Homo sapiens]
          Length = 200

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 21/101 (20%)

Query: 1   MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQ 60
           +A      G +W    +LC       F +PY+++    G PV F                
Sbjct: 54  VAGGFVGLGNVWRF-PYLCYKNGGGAFLIPYFIFLFGSGLPVFF---------------- 96

Query: 61  MMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVAL 101
           + +++   G+Y S  GI   E +IC + +G+G   +++V+L
Sbjct: 97  LEIII---GQYTSEGGITCWE-KICPLFSGIGYASVVIVSL 133


>gi|197276623 solute carrier family 6 (neurotransmitter transporter,
           taurine), member 6 isoform a [Homo sapiens]
          Length = 620

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 21/101 (20%)

Query: 1   MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQ 60
           +A      G +W    +LC       F +PY+++    G PV F                
Sbjct: 54  VAGGFVGLGNVWRF-PYLCYKNGGGAFLIPYFIFLFGSGLPVFF---------------- 96

Query: 61  MMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVAL 101
           + +++   G+Y S  GI   E +IC + +G+G   +++V+L
Sbjct: 97  LEIII---GQYTSEGGITCWE-KICPLFSGIGYASVVIVSL 133


>gi|54607094 solute carrier family 6 (neurotransmitter transporter,
           taurine), member 6 isoform a [Homo sapiens]
          Length = 620

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 21/101 (20%)

Query: 1   MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQ 60
           +A      G +W    +LC       F +PY+++    G PV F                
Sbjct: 54  VAGGFVGLGNVWRF-PYLCYKNGGGAFLIPYFIFLFGSGLPVFF---------------- 96

Query: 61  MMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVAL 101
           + +++   G+Y S  GI   E +IC + +G+G   +++V+L
Sbjct: 97  LEIII---GQYTSEGGITCWE-KICPLFSGIGYASVVIVSL 133


>gi|13899273 transmembrane protein 47 [Homo sapiens]
          Length = 181

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 66  EECGRYASF-----QGIPSAEWRICTIVTGLGCGLLLLVA-LTALMGCCVSDLISRTVGR 119
           E C + AS      +   S++W+I T+   LG   ++L+A L  L+  CV     R   R
Sbjct: 56  ESCRKPASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGS--RRRFYR 113

Query: 120 VAGGIQFLGGLLIGAGCALYPL 141
               + F   +L      LYP+
Sbjct: 114 PVAVMLFAAVVLQVCSLVLYPI 135


>gi|9789987 potassium voltage-gated channel, Shal-related subfamily,
           member 2 [Homo sapiens]
          Length = 630

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 17/73 (23%)

Query: 61  MMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGCCVSDLISRTV-GR 119
           +M   E+    + F  IP+A W     +T LG G                D++ +T+ G+
Sbjct: 341 VMFYAEKGSSASKFTSIPAAFWYTIVTMTTLGYG----------------DMVPKTIAGK 384

Query: 120 VAGGIQFLGGLLI 132
           + G I  L G+L+
Sbjct: 385 IFGSICSLSGVLV 397


>gi|171184408 solute carrier family 6 (neurotransmitter transporter,
           betaine/GABA), member 12 [Homo sapiens]
          Length = 614

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 21/98 (21%)

Query: 1   MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQ 60
           +A  +   G +W    +LC       FF+PY+++    G PV F                
Sbjct: 49  VAGEIIGLGNVWRF-PYLCYKNGGGAFFIPYFIFFFVCGIPVFF---------------- 91

Query: 61  MMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLL 98
              +    G+Y S QG  +A  +IC +  G+G   +++
Sbjct: 92  ---LEVALGQYTS-QGSVTAWRKICPLFQGIGLASVVI 125


>gi|171184406 solute carrier family 6 (neurotransmitter transporter,
           betaine/GABA), member 12 [Homo sapiens]
          Length = 614

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 21/98 (21%)

Query: 1   MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQ 60
           +A  +   G +W    +LC       FF+PY+++    G PV F                
Sbjct: 49  VAGEIIGLGNVWRF-PYLCYKNGGGAFFIPYFIFFFVCGIPVFF---------------- 91

Query: 61  MMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLL 98
              +    G+Y S QG  +A  +IC +  G+G   +++
Sbjct: 92  ---LEVALGQYTS-QGSVTAWRKICPLFQGIGLASVVI 125


>gi|171184404 solute carrier family 6 (neurotransmitter transporter,
           betaine/GABA), member 12 [Homo sapiens]
          Length = 614

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 21/98 (21%)

Query: 1   MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQ 60
           +A  +   G +W    +LC       FF+PY+++    G PV F                
Sbjct: 49  VAGEIIGLGNVWRF-PYLCYKNGGGAFFIPYFIFFFVCGIPVFF---------------- 91

Query: 61  MMVMVEECGRYASFQGIPSAEWRICTIVTGLGCGLLLL 98
              +    G+Y S QG  +A  +IC +  G+G   +++
Sbjct: 92  ---LEVALGQYTS-QGSVTAWRKICPLFQGIGLASVVI 125


>gi|21361581 solute carrier family 6 (neurotransmitter transporter,
           GABA), member 13 [Homo sapiens]
          Length = 602

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 23/102 (22%)

Query: 1   MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQ 60
           +A  +   G +W    +LC       FF+PY ++    G PV                  
Sbjct: 45  VAGEIIGLGNVWRF-PYLCYKNGGGAFFIPYLVFLFTCGIPV------------------ 85

Query: 61  MMVMVEECGRYASFQGIPSAEWR-ICTIVTGLGCGLLLLVAL 101
             ++    G+Y S  G+ +  WR IC I  G+G    ++V L
Sbjct: 86  -FLLETALGQYTSQGGVTA--WRKICPIFEGIGYASQMIVIL 124


>gi|134304856 solute carrier family 6, member 7 [Homo sapiens]
          Length = 636

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 78  PSAEWRICTIVTGLGCGLLLLVALTAL 104
           P A W+I  +  G G  +LL+V L A+
Sbjct: 105 PLAVWKISPLFKGAGAAMLLIVGLVAI 131


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.141    0.489 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,018,729
Number of Sequences: 37866
Number of extensions: 338863
Number of successful extensions: 904
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 24
length of query: 200
length of database: 18,247,518
effective HSP length: 97
effective length of query: 103
effective length of database: 14,574,516
effective search space: 1501175148
effective search space used: 1501175148
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.