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Search of human proteins with 5031753
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo
sapiens]
(449 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapi... 929 0.0
gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sap... 900 0.0
gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapi... 900 0.0
gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sap... 662 0.0
gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sap... 662 0.0
gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sap... 662 0.0
gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sap... 662 0.0
gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sap... 662 0.0
gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] 662 0.0
gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a... 414 e-115
gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b... 392 e-109
gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Hom... 201 1e-51
gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Hom... 179 3e-45
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens] 130 3e-30
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens] 130 3e-30
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens] 130 3e-30
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens] 130 3e-30
gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens] 130 3e-30
gi|45935393 RNA binding motif protein 35B [Homo sapiens] 116 5e-26
gi|118722349 RNA binding motif protein 12B [Homo sapiens] 83 6e-16
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 82 1e-15
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 82 1e-15
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 73 6e-13
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 73 6e-13
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 73 6e-13
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 56 6e-08
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 56 6e-08
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 55 2e-07
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 54 4e-07
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 52 8e-07
>gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo
sapiens]
Length = 449
Score = 929 bits (2401), Expect = 0.0
Identities = 449/449 (100%), Positives = 449/449 (100%)
Query: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
Sbjct: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
Query: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
Sbjct: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
Query: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
Sbjct: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
Query: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
Sbjct: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
Query: 421 GGGYGGQSSMSGYDQVLQENSSDFQSNIA 449
GGGYGGQSSMSGYDQVLQENSSDFQSNIA
Sbjct: 421 GGGYGGQSSMSGYDQVLQENSSDFQSNIA 449
>gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 900 bits (2327), Expect = 0.0
Identities = 432/449 (96%), Positives = 441/449 (98%)
Query: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
MML TEG EGFVVKVRGLPWSCSADEV RFFSDCKIQNG GIRFIYTREGRPSGEAFVE
Sbjct: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
Query: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
LESE+EVKLALKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPF
Sbjct: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GCSKEEIVQFFSGLEIVPNG+TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
Query: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
GGYDDY GYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRA
Sbjct: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELF
Sbjct: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
Query: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
LNSTAG SGGAY+H YVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
Sbjct: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
Query: 421 GGGYGGQSSMSGYDQVLQENSSDFQSNIA 449
GGGYGGQSSMSGYDQVLQENSSD+QSN+A
Sbjct: 421 GGGYGGQSSMSGYDQVLQENSSDYQSNLA 449
>gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 900 bits (2327), Expect = 0.0
Identities = 432/449 (96%), Positives = 441/449 (98%)
Query: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
MML TEG EGFVVKVRGLPWSCSADEV RFFSDCKIQNG GIRFIYTREGRPSGEAFVE
Sbjct: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
Query: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
LESE+EVKLALKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPF
Sbjct: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GCSKEEIVQFFSGLEIVPNG+TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
Query: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
GGYDDY GYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRA
Sbjct: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELF
Sbjct: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
Query: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
LNSTAG SGGAY+H YVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
Sbjct: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
Query: 421 GGGYGGQSSMSGYDQVLQENSSDFQSNIA 449
GGGYGGQSSMSGYDQVLQENSSD+QSN+A
Sbjct: 421 GGGYGGQSSMSGYDQVLQENSSDYQSNLA 449
>gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 662 bits (1707), Expect = 0.0
Identities = 322/435 (74%), Positives = 361/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
MMLG EGGEGFVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SED+VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
GGY++Y+G +DGYGF +D FGRDL+YC SGM DHRYGD T QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNST GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNST--------------------TGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 662 bits (1707), Expect = 0.0
Identities = 322/435 (74%), Positives = 361/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
MMLG EGGEGFVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SED+VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
GGY++Y+G +DGYGF +D FGRDL+YC SGM DHRYGD T QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNST GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNST--------------------TGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 662 bits (1707), Expect = 0.0
Identities = 322/435 (74%), Positives = 361/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
MMLG EGGEGFVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SED+VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
GGY++Y+G +DGYGF +D FGRDL+YC SGM DHRYGD T QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNST GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNST--------------------TGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 662 bits (1707), Expect = 0.0
Identities = 322/435 (74%), Positives = 361/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
MMLG EGGEGFVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SED+VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
GGY++Y+G +DGYGF +D FGRDL+YC SGM DHRYGD T QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNST GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNST--------------------TGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 662 bits (1707), Expect = 0.0
Identities = 322/435 (74%), Positives = 361/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
MMLG EGGEGFVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SED+VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
GGY++Y+G +DGYGF +D FGRDL+YC SGM DHRYGD T QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNST GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNST--------------------TGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
Length = 415
Score = 662 bits (1707), Expect = 0.0
Identities = 322/435 (74%), Positives = 361/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
MMLG EGGEGFVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SED+VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
GGY++Y+G +DGYGF +D FGRDL+YC SGM DHRYGD T QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNST GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNST--------------------TGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a
[Homo sapiens]
Length = 346
Score = 414 bits (1063), Expect = e-115
Identities = 217/345 (62%), Positives = 243/345 (70%), Gaps = 28/345 (8%)
Query: 93 MDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRST 152
MDWV+KH GPN A+DG VRLRGLPFGCSKEEIVQFF GLEIVPNGITL +D+QGRST
Sbjct: 1 MDWVMKHNGPND---ASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57
Query: 153 GEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDR 212
GEAFVQFAS+EIAE AL KHKERIGHRYIEIF+SSR+E++ YDPPR+L+ QRPGPYDR
Sbjct: 58 GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116
Query: 213 PGAGR-GYNSIGRGAGFERMRRG--AYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFS 269
P GR GY GRG+ ++RMRRG Y GGYGG+DDY GYN+ YG+G+D F D
Sbjct: 117 PIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNN-YGYGNDGFD-DRMRDGR 174
Query: 270 GMSDHRYGDGGSTFQS-TTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
GM H YG G GH VHMRGLP+RATENDI NFFSPLNP+RVHI+IG DGR T
Sbjct: 175 GMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 234
Query: 329 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGAS 388
GEADVEF THEDAVAAMSKDK NMQHRY+ELFLNST G G G+
Sbjct: 235 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSG-------------MGGSG 281
Query: 389 GGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGY 433
G YG G+ NQ YG + Y GGYG + GY
Sbjct: 282 MGGYGRD-----GMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGY 321
Score = 72.8 bits (177), Expect = 6e-13
Identities = 54/155 (34%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 112 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
FV +RGLPF ++ +I FFS L P + + + GR+TGEA V+F + E A A+ K
Sbjct: 196 FVHMRGLPFRATENDIANFFSPLN--PIRVHIDIGADGRATGEADVEFVTHEDAVAAMSK 253
Query: 172 HKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGR--GYNSIGRGAGFE 229
K + HRYIE+F +S + M G Y R G GY S+GR G
Sbjct: 254 DKNNMQHRYIELFLNSTPGGGSG-------MGGSGMGGYGRDGMDNQGGYGSVGR-MGMG 305
Query: 230 RMRRGAYG------------GGYGGYDDYNGYNDG 252
G YG GG GGY G + G
Sbjct: 306 NNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGG 340
Score = 68.6 bits (166), Expect = 1e-11
Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
V++RGLP+ CS +E+ +FF +I GI +GR +GEAFV+ S++ + AL
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 73 KDRETMGHRYVEVFKSNNVEM 93
K +E +GHRY+E+F+S+ E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 68.2 bits (165), Expect = 1e-11
Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSKD 348
V +RGLP+ ++ +I FF L V I + D GR TGEA V+FA+ E A A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 349 KANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSY 408
K + HRY+E+F +S + G R + G G Y + +GG G +
Sbjct: 78 KERIGHRYIEIFRSSRSEIKGFYDPPRRL-------LGQRPGPY-DRPIGGRGGYYGAGR 129
Query: 409 GGPASQQLSGG--YGGGYGGQSSMSGYD 434
G + GG Y GGYGG GY+
Sbjct: 130 GSMYDRMRRGGDGYDGGYGGFDDYGGYN 157
Score = 48.9 bits (115), Expect = 9e-06
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 10 GFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKL 69
G V +RGLP+ + +++ FFS + +GR +GEA VE + ++
Sbjct: 194 GHFVHMRGLPFRATENDIANFFSPLNPIR----VHIDIGADGRATGEADVEFVTHEDAVA 249
Query: 70 ALKKDRETMGHRYVEVF 86
A+ KD+ M HRY+E+F
Sbjct: 250 AMSKDKNNMQHRYIELF 266
>gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b
[Homo sapiens]
Length = 331
Score = 392 bits (1006), Expect = e-109
Identities = 209/343 (60%), Positives = 233/343 (67%), Gaps = 39/343 (11%)
Query: 93 MDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRST 152
MDWV+KH GPN A+DG VRLRGLPFGCSKEEIVQFF GLEIVPNGITL +D+QGRST
Sbjct: 1 MDWVMKHNGPND---ASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57
Query: 153 GEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDR 212
GEAFVQFAS+EIAE AL KHKERIGHRYIEIF+SSR+E++ YDPPR+L+ QRPGPYDR
Sbjct: 58 GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116
Query: 213 PGAGR-GYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGM 271
P GR GY GRG+ YGG+DDY GYN+ YG+G+D F D GM
Sbjct: 117 PIGGRGGYYGAGRGS-------------YGGFDDYGGYNN-YGYGNDGFD-DRMRDGRGM 161
Query: 272 SDHRYGDGGSTFQS-TTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGE 330
H YG G GH VHMRGLP+RATENDI NFFSPLNP+RVHI+IG DGR TGE
Sbjct: 162 GGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGE 221
Query: 331 ADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGASGG 390
ADVEF THEDAVAAMSKDK NMQHRY+ELFLNST G G G+ G
Sbjct: 222 ADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSG-------------MGGSGMG 268
Query: 391 AYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGY 433
YG G+ NQ YG + Y GGYG + GY
Sbjct: 269 GYGRD-----GMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGY 306
Score = 75.1 bits (183), Expect = 1e-13
Identities = 84/323 (26%), Positives = 119/323 (36%), Gaps = 98/323 (30%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPS------------------ 54
V++RGLP+ CS +E+ +FF +I GI +GR +
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 55 ------GEAFVEL--ESEDEVKLALKKDRETMGHR-------------YVEVFKSNNVEM 93
G ++E+ S E+K R +G R Y + +
Sbjct: 76 KHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSYGGF 135
Query: 94 DWVLKHTGPNSPDTANDGF------------------------------VRLRGLPFGCS 123
D + G N+ NDGF V +RGLPF +
Sbjct: 136 D---DYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRAT 192
Query: 124 KEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 183
+ +I FFS L P + + + GR+TGEA V+F + E A A+ K K + HRYIE+
Sbjct: 193 ENDIANFFSPLN--PIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIEL 250
Query: 184 FKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGR--GYNSIGRGAGFERMRRGAYG---- 237
F +S + M G Y R G GY S+GR G G YG
Sbjct: 251 FLNSTPGGGSG-------MGGSGMGGYGRDGMDNQGGYGSVGR-MGMGNNYSGGYGTPDG 302
Query: 238 --------GGYGGYDDYNGYNDG 252
GG GGY G + G
Sbjct: 303 LGGYGRGGGGSGGYYGQGGMSGG 325
Score = 48.9 bits (115), Expect = 9e-06
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 10 GFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKL 69
G V +RGLP+ + +++ FFS + +GR +GEA VE + ++
Sbjct: 179 GHFVHMRGLPFRATENDIANFFSPLNPIR----VHIDIGADGRATGEADVEFVTHEDAVA 234
Query: 70 ALKKDRETMGHRYVEVF 86
A+ KD+ M HRY+E+F
Sbjct: 235 AMSKDKNNMQHRYIELF 251
>gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Homo
sapiens]
Length = 480
Score = 201 bits (510), Expect = 1e-51
Identities = 99/193 (51%), Positives = 138/193 (71%), Gaps = 3/193 (1%)
Query: 3 LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62
L E + F+++ +GLPWSC+ ++V FFSDC+I+NG GI F+ R+G+ G+A +E+E
Sbjct: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
Query: 63 SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122
SE +V+ AL+K R MG RYVEV++ NN ++D ++K S NDG VRLRGLP+ C
Sbjct: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
Query: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181
++++IV FF+GL IV IT +D++G R TGEA+VQF E+A +AL KH+E IG+RYI
Sbjct: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
Query: 182 EIFKSSRAEVRTH 194
EIF S R EVRTH
Sbjct: 320 EIFPSRRNEVRTH 332
Score = 107 bits (266), Expect = 3e-23
Identities = 48/75 (64%), Positives = 59/75 (78%)
Query: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
H VHMRGLP++A DI NFF+PL PVR+ +E G+ TGEADV F THEDAVAAM KD
Sbjct: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
Query: 349 KANMQHRYVELFLNS 363
++++ HRY+ELFLNS
Sbjct: 461 RSHVHHRYIELFLNS 475
Score = 92.8 bits (229), Expect = 6e-19
Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 61/231 (26%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGR-PSGEAFVELESEDEVKLA 70
VV++RGLP+SC+ ++ FF+ I + I F+ GR +GEA+V+ E + A
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 306
Query: 71 LKKDRETMGHRYVEVFKSNN------------------------VEMDWVLKHTGPNS-- 104
L K RE +G+RY+E+F S E + V + N
Sbjct: 307 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 366
Query: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136
P+ A+ G FV +RGLPF + ++I+ FF+ L+
Sbjct: 367 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 425
Query: 137 VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
P IT+ G++TGEA V F + E A A+ K + + HRYIE+F +S
Sbjct: 426 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475
Score = 52.4 bits (124), Expect = 8e-07
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349
V +RGLPY E DI +FF+ LN V + + G R TGEA V+F E A A+ K +
Sbjct: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
Query: 350 ANMQHRYVELF 360
+ +RY+E+F
Sbjct: 312 EEIGNRYIEIF 322
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
+ +GLP+ T D+ NFFS +R +H + DG+ G+A +E + +D A+
Sbjct: 152 IRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 346 SKDKANMQHRYVELF 360
K + M RYVE++
Sbjct: 211 EKHRMYMGQRYVEVY 225
>gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Homo
sapiens]
Length = 318
Score = 179 bits (455), Expect = 3e-45
Identities = 90/171 (52%), Positives = 123/171 (71%), Gaps = 3/171 (1%)
Query: 25 DEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE 84
++V FFSDC+I+NG GI F+ R+G+ G+A +E+ESE +V+ AL+K R MG RYVE
Sbjct: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
Query: 85 VFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLP 144
V++ NN ++D ++K S NDG VRLRGLP+ C++++IV FF+GL IV IT
Sbjct: 62 VYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFV 119
Query: 145 VDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTH 194
+D++G R TGEA+VQF E+A +AL KH+E IG+RYIEIF S R EVRTH
Sbjct: 120 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
Score = 107 bits (266), Expect = 3e-23
Identities = 48/75 (64%), Positives = 59/75 (78%)
Query: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
H VHMRGLP++A DI NFF+PL PVR+ +E G+ TGEADV F THEDAVAAM KD
Sbjct: 239 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 298
Query: 349 KANMQHRYVELFLNS 363
++++ HRY+ELFLNS
Sbjct: 299 RSHVHHRYIELFLNS 313
Score = 92.8 bits (229), Expect = 6e-19
Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 61/231 (26%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGR-PSGEAFVELESEDEVKLA 70
VV++RGLP+SC+ ++ FF+ I + I F+ GR +GEA+V+ E + A
Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
Query: 71 LKKDRETMGHRYVEVFKSNN------------------------VEMDWVLKHTGPNS-- 104
L K RE +G+RY+E+F S E + V + N
Sbjct: 145 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 204
Query: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136
P+ A+ G FV +RGLPF + ++I+ FF+ L+
Sbjct: 205 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 263
Query: 137 VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
P IT+ G++TGEA V F + E A A+ K + + HRYIE+F +S
Sbjct: 264 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
Score = 52.4 bits (124), Expect = 8e-07
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349
V +RGLPY E DI +FF+ LN V + + G R TGEA V+F E A A+ K +
Sbjct: 90 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 149
Query: 350 ANMQHRYVELF 360
+ +RY+E+F
Sbjct: 150 EEIGNRYIEIF 160
Score = 37.0 bits (84), Expect = 0.036
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 304 DIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE 358
D+ NFFS +R +H + DG+ G+A +E + +D A+ K + M RYVE
Sbjct: 3 DVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
Query: 359 LF 360
++
Sbjct: 62 VY 63
>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
Length = 604
Score = 130 bits (326), Expect = 3e-30
Identities = 79/193 (40%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
VV+ RGLPW S ++ RFF I G G +GR +GEA V SE+ LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSGLEIVPNG------ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
Query: 180 YIEIFKSSRAEVR 192
YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410
Score = 115 bits (289), Expect = 6e-26
Identities = 70/202 (34%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
Query: 12 VVKVRGLPWSCSADEVQRFFSD-CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70
+V++RGLP++ +A+EV FF C I G +GI F+ +GRP+G+AFV E+ + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRETMGHRYVEVFKSNNVEMDWVLKH----------TGP--------NSPDTANDGF 112
L+K ++ +G RY+E+F+S E+ VL T P P T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 170
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEIFKSSRAEV 191
K HK+ + RY+E+F+ S E+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 62.8 bits (151), Expect = 6e-10
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
+++RGLP++ + +++ F + G+ + +GRPSG+AF++++S D +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRETMGHRYVEVFKSNNVEMDWVL 97
K ++ M RYVEVF+ + EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 52.8 bits (125), Expect = 6e-07
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 SKDKANMQHRYVELFLNSTA 365
K K + RY+ELF ++ A
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 345 MSKDKANMQHRYVELF 360
K NM+ RYVE+F
Sbjct: 506 QKCHKKNMKDRYVEVF 521
Score = 46.2 bits (108), Expect = 6e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 349 KANMQHRYVELF 360
K +M RY+E++
Sbjct: 287 KHHMGTRYIEVY 298
>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
Length = 659
Score = 130 bits (326), Expect = 3e-30
Identities = 79/193 (40%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
VV+ RGLPW S ++ RFF I G G +GR +GEA V SE+ LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSGLEIVPNG------ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
Query: 180 YIEIFKSSRAEVR 192
YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410
Score = 115 bits (289), Expect = 6e-26
Identities = 70/202 (34%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
Query: 12 VVKVRGLPWSCSADEVQRFFSD-CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70
+V++RGLP++ +A+EV FF C I G +GI F+ +GRP+G+AFV E+ + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRETMGHRYVEVFKSNNVEMDWVLKH----------TGP--------NSPDTANDGF 112
L+K ++ +G RY+E+F+S E+ VL T P P T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 170
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEIFKSSRAEV 191
K HK+ + RY+E+F+ S E+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 62.8 bits (151), Expect = 6e-10
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
+++RGLP++ + +++ F + G+ + +GRPSG+AF++++S D +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRETMGHRYVEVFKSNNVEMDWVL 97
K ++ M RYVEVF+ + EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 52.8 bits (125), Expect = 6e-07
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 SKDKANMQHRYVELFLNSTA 365
K K + RY+ELF ++ A
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 345 MSKDKANMQHRYVELF 360
K NM+ RYVE+F
Sbjct: 506 QKCHKKNMKDRYVEVF 521
Score = 46.2 bits (108), Expect = 6e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 349 KANMQHRYVELF 360
K +M RY+E++
Sbjct: 287 KHHMGTRYIEVY 298
>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
Length = 608
Score = 130 bits (326), Expect = 3e-30
Identities = 79/193 (40%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
VV+ RGLPW S ++ RFF I G G +GR +GEA V SE+ LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSGLEIVPNG------ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
Query: 180 YIEIFKSSRAEVR 192
YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410
Score = 115 bits (289), Expect = 6e-26
Identities = 70/202 (34%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
Query: 12 VVKVRGLPWSCSADEVQRFFSD-CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70
+V++RGLP++ +A+EV FF C I G +GI F+ +GRP+G+AFV E+ + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRETMGHRYVEVFKSNNVEMDWVLKH----------TGP--------NSPDTANDGF 112
L+K ++ +G RY+E+F+S E+ VL T P P T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 170
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEIFKSSRAEV 191
K HK+ + RY+E+F+ S E+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 62.8 bits (151), Expect = 6e-10
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
+++RGLP++ + +++ F + G+ + +GRPSG+AF++++S D +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRETMGHRYVEVFKSNNVEMDWVL 97
K ++ M RYVEVF+ + EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 52.8 bits (125), Expect = 6e-07
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 SKDKANMQHRYVELFLNSTA 365
K K + RY+ELF ++ A
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 345 MSKDKANMQHRYVELF 360
K NM+ RYVE+F
Sbjct: 506 QKCHKKNMKDRYVEVF 521
Score = 46.2 bits (108), Expect = 6e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 349 KANMQHRYVELF 360
K +M RY+E++
Sbjct: 287 KHHMGTRYIEVY 298
>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
Length = 677
Score = 130 bits (326), Expect = 3e-30
Identities = 79/193 (40%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
VV+ RGLPW S ++ RFF I G G +GR +GEA V SE+ LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSGLEIVPNG------ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
Query: 180 YIEIFKSSRAEVR 192
YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410
Score = 115 bits (289), Expect = 6e-26
Identities = 70/202 (34%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
Query: 12 VVKVRGLPWSCSADEVQRFFSD-CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70
+V++RGLP++ +A+EV FF C I G +GI F+ +GRP+G+AFV E+ + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRETMGHRYVEVFKSNNVEMDWVLKH----------TGP--------NSPDTANDGF 112
L+K ++ +G RY+E+F+S E+ VL T P P T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 170
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEIFKSSRAEV 191
K HK+ + RY+E+F+ S E+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 62.8 bits (151), Expect = 6e-10
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
+++RGLP++ + +++ F + G+ + +GRPSG+AF++++S D +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRETMGHRYVEVFKSNNVEMDWVL 97
K ++ M RYVEVF+ + EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 52.8 bits (125), Expect = 6e-07
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 SKDKANMQHRYVELFLNSTA 365
K K + RY+ELF ++ A
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 345 MSKDKANMQHRYVELF 360
K NM+ RYVE+F
Sbjct: 506 QKCHKKNMKDRYVEVF 521
Score = 46.2 bits (108), Expect = 6e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 349 KANMQHRYVELF 360
K +M RY+E++
Sbjct: 287 KHHMGTRYIEVY 298
>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
Length = 681
Score = 130 bits (326), Expect = 3e-30
Identities = 79/193 (40%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
VV+ RGLPW S ++ RFF I G G +GR +GEA V SE+ LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSGLEIVPNG------ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
Query: 180 YIEIFKSSRAEVR 192
YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410
Score = 115 bits (289), Expect = 6e-26
Identities = 70/202 (34%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
Query: 12 VVKVRGLPWSCSADEVQRFFSD-CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70
+V++RGLP++ +A+EV FF C I G +GI F+ +GRP+G+AFV E+ + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRETMGHRYVEVFKSNNVEMDWVLKH----------TGP--------NSPDTANDGF 112
L+K ++ +G RY+E+F+S E+ VL T P P T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 170
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEIFKSSRAEV 191
K HK+ + RY+E+F+ S E+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 62.8 bits (151), Expect = 6e-10
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
+++RGLP++ + +++ F + G+ + +GRPSG+AF++++S D +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRETMGHRYVEVFKSNNVEMDWVL 97
K ++ M RYVEVF+ + EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 52.8 bits (125), Expect = 6e-07
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 SKDKANMQHRYVELFLNSTA 365
K K + RY+ELF ++ A
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 345 MSKDKANMQHRYVELF 360
K NM+ RYVE+F
Sbjct: 506 QKCHKKNMKDRYVEVF 521
Score = 46.2 bits (108), Expect = 6e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 349 KANMQHRYVELF 360
K +M RY+E++
Sbjct: 287 KHHMGTRYIEVY 298
>gi|45935393 RNA binding motif protein 35B [Homo sapiens]
Length = 717
Score = 116 bits (290), Expect = 5e-26
Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
VV+ RGLPW S +V RFF + G G+ +GR +GEA + ++ LAL
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
Query: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ E +K G S + A + +RLRGLPF
Sbjct: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
Query: 126 EIVQFFSGLEIVPNGITLPVDF----QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181
+++ F G E G T + F GR TG+AF FA +E+A+ AL++HK +G RYI
Sbjct: 363 DVLGFL-GPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYI 421
Query: 182 EIFKSSRAEVR 192
E+F+S+ AEV+
Sbjct: 422 ELFRSTAAEVQ 432
Score = 107 bits (268), Expect = 2e-23
Identities = 64/201 (31%), Positives = 110/201 (54%), Gaps = 22/201 (10%)
Query: 12 VVKVRGLPWSCSADEVQRFFS-DCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70
++++RGLP+S +V F +C + G +G+ F+ +GRP+G+AF E+ + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 71 LKKDRETMGHRYVEVFKSNNVEMDWVLKHTG-----------------PNSPDTANDGFV 113
L++ + +G RY+E+F+S E+ VL P +P T D V
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD-CV 467
Query: 114 RLRGLPFGCSKEEIVQFF--SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
RLRGLP+ + E+I+ F + +I P+G+ + ++ QGR +G+AF+Q S E A A ++
Sbjct: 468 RLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQR 527
Query: 172 -HKERIGHRYIEIFKSSRAEV 191
HK+ + RY+E+ S E+
Sbjct: 528 CHKKVMKERYVEVVPCSTEEM 548
Score = 74.3 bits (181), Expect = 2e-13
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 100 TGPNSPDTANDG--FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFV 157
TGP S D VR RGLP+ S +++ +FF GL + G+ L ++ QGR GEA +
Sbjct: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
Query: 158 QFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
+F E + AL++HK +G RYIE++K++ E
Sbjct: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
Score = 55.8 bits (133), Expect = 8e-08
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
V++RGLP++ + +++ F + G+ + ++GRPSG+AF+++ S + A +
Sbjct: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
Query: 73 K-DRETMGHRYVEVFKSNNVEMDWVL 97
+ ++ M RYVEV + EM VL
Sbjct: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
Score = 53.1 bits (126), Expect = 5e-07
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAM 345
CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++ + E A+AA
Sbjct: 466 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 525
Query: 346 SK-DKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGASG 389
+ K M+ RYVE+ ST S + + T G SG
Sbjct: 526 QRCHKKVMKERYVEVVPCSTEEMS---------RVLMGGTLGRSG 561
Score = 51.6 bits (122), Expect = 1e-06
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIE-----IGPDGRVTGEADVEFATHEDAVAAM 345
+ +RGLP+ A D+ F P PV E PDGR TG+A FA E A AA+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 346 SKDKANMQHRYVELFLNSTA 365
+ K + RY+ELF ++ A
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 47.4 bits (111), Expect = 3e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
V RGLP+++++ D+ FF LN R V + + GR GEA + F E A+ +
Sbjct: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
Query: 349 KANMQHRYVELF 360
K +M RY+E++
Sbjct: 309 KHHMGVRYIEVY 320
>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
Length = 1001
Score = 82.8 bits (203), Expect = 6e-16
Identities = 76/256 (29%), Positives = 117/256 (45%), Gaps = 36/256 (14%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
+RL GLPF +I FF+GL I G+ + G GEAF+ FA+ E A +A+ +
Sbjct: 5 IRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISRS 60
Query: 173 KERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGF-ERM 231
I +E+F SS+AE++ K + M+R R G G + + + F E +
Sbjct: 61 GGFIKDSSVELFLSSKAEMQ-------KTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESV 113
Query: 232 RRGAYGGGYGGY--DDYNGYNDGYGFGS--DRFGRDLNYCFSGMSDHRYGDGGSTFQSTT 287
+ A GYG D + +G G G+ R R L +++ Y
Sbjct: 114 KEEASNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLK------AENPY----------- 156
Query: 288 GHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
+ +RGLPY E+D+ FFS L V DGR G+A V+FA+ DA +
Sbjct: 157 ---LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKC 213
Query: 348 DKANMQHRYVELFLNS 363
++ M R++E+ S
Sbjct: 214 HRSFMGSRFIEVMQGS 229
Score = 63.5 bits (153), Expect = 4e-10
Identities = 87/407 (21%), Positives = 148/407 (36%), Gaps = 114/407 (28%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
V+++ GLP+ +++ FF+ I +G G+ I G GEAF+ ++++ + A+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG--GVHII----GGEIGEAFIIFATDEDARRAI 57
Query: 72 KKDRETMGHRYVEVFKSNNVEMDWVLK-----HTGPNSPDTANDG--------------- 111
+ + VE+F S+ EM ++ G P + G
Sbjct: 58 SRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEA 117
Query: 112 --------------------------------------FVRLRGLPFGCSKEEIVQFFSG 133
++ LRGLP+ +++++ FFSG
Sbjct: 118 SNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSG 177
Query: 134 LEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRT 193
L + +G+ GR+ G+A V+FAS A LK H+ +G R+IE+ + S
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGS------ 229
Query: 194 HYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGY 253
++ G N++ G R + G ND +
Sbjct: 230 -----------------EQQWIEFGGNAVKEGDVLRRSEE---------HSPPRGINDRH 263
Query: 254 GFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLN 313
F S H + +S G VH++ L E D+ NFF +
Sbjct: 264 --------------FRKRS-HSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTD 308
Query: 314 PVRVHIE-IGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVEL 359
I + D T A V F T +D A+S K +Q+R V +
Sbjct: 309 LTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHI 355
Score = 59.7 bits (143), Expect = 5e-09
Identities = 80/365 (21%), Positives = 134/365 (36%), Gaps = 101/365 (27%)
Query: 15 VRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKD 74
+RGLP+ + D+V+ FFS + G+ F+ +GR +G+A V+ S + LK
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVD----GVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 75 RETMGHRYVEV----------FKSNNVEMDWVLKHTGPNSPDTA-NDG------------ 111
R MG R++EV F N V+ VL+ + +SP ND
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 112 ----------FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFAS 161
+V L+ L + ++ FF G ++ I + R T AFV F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 162 QEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNS 221
+ AL HK + +R + H DP + ++ Y++
Sbjct: 334 LKDYNTALSLHKTVLQYRPV------------HIDPISRKQMLKFIARYEKK-------- 373
Query: 222 IGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGS 281
R ER R G +Y G+
Sbjct: 374 --RSGSLERDR------------------------------------PGHVSQKYSQEGN 395
Query: 282 TFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHE 339
+ Q C+++R P+ T+ ++ FF+ L +++ G GEA V+F + E
Sbjct: 396 SGQKL---CIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEE 452
Query: 340 DAVAA 344
A+ A
Sbjct: 453 QAMKA 457
Score = 53.1 bits (126), Expect = 5e-07
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 10 GFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKL 69
GF V ++ L S +++ FF + + + IRF+Y E R + AFV ++ +
Sbjct: 283 GFYVHLKNLSLSIDERDLRNFFRGTDLTD--EQIRFLYKDENR-TRYAFVMFKTLKDYNT 339
Query: 70 ALKKDRETMGHRYVEVF-----------------KSNNVEMDWVLKHTGPNSPDTANDG- 111
AL + + +R V + +S ++E D H N G
Sbjct: 340 ALSLHKTVLQYRPVHIDPISRKQMLKFIARYEKKRSGSLERDRP-GHVSQKYSQEGNSGQ 398
Query: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
+ +R PF +K E+ +FF+ + + I L D +G GEA V+F S+E A KA
Sbjct: 399 KLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAE 458
Query: 170 KKHKER 175
+ ++ R
Sbjct: 459 RLNRRR 464
Score = 46.6 bits (109), Expect = 5e-05
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
+++ LPF + EI+ FF G I+P+ +++ + QG TGEA V + A A+K
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 173 KER-IGHRYIEI 183
+R +G R +++
Sbjct: 987 NDRPVGPRKVKL 998
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEDAVAA 344
+ + GLP+ A DI +FF+ L PDG V GEA + FAT EDA A
Sbjct: 5 IRLLGLPFIAGPVDIRHFFTGLTI--------PDGGVHIIGGEIGEAFIIFATDEDARRA 56
Query: 345 MSKDKANMQHRYVELFLNSTA 365
+S+ ++ VELFL+S A
Sbjct: 57 ISRSGGFIKDSSVELFLSSKA 77
Score = 36.2 bits (82), Expect = 0.062
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 8 GEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEV 67
G+ + +R P+ + EVQ+FF+D + I +Y +G GEA V+ +SE++
Sbjct: 397 GQKLCIYIRNFPFDVTKVEVQKFFADFLL--AEDDIYLLYDDKGVGLGEALVKFKSEEQA 454
Query: 68 KLALKKDR 75
A + +R
Sbjct: 455 MKAERLNR 462
Score = 35.0 bits (79), Expect = 0.14
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
+K+ LP+ + +E+ FF +I + I+ Y +G P+GEA V + + +E A+K
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQ--YNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 34.3 bits (77), Expect = 0.24
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 236 YGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRG 295
+G GG D+ +N G F RF M D + G + +
Sbjct: 888 FGRPEGGKFDFGKHNMG-SFPEGRF----------MPDPKINCGSGRVTP-----IKIMN 931
Query: 296 LPYRATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAM 345
LP++A N+I +FF + P V I+ G TGEA V + +A+AA+
Sbjct: 932 LPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAI 983
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 82.0 bits (201), Expect = 1e-15
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 38/220 (17%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
V V G+P+S ++V+ FF ++ + + GR +G V+ S + ALK
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 361
Query: 73 KDRETMGHRYVEVFKSNNVEMDWVL--------KHTGPNS-----PDTA----------- 108
++R M RYVEV S E WV ++ GP+ P T
Sbjct: 362 RNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR 419
Query: 109 -------NDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFA 160
GF V L+GLPF + ++ FF L+IV + I + G++TGE FV+F
Sbjct: 420 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR 479
Query: 161 SQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRK 200
++ + AL +HK+ +G+R+I++ ++ + D RK
Sbjct: 480 NEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRK 519
Score = 80.9 bits (198), Expect = 2e-15
Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 22/225 (9%)
Query: 10 GFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKL 69
GF V ++GLP+ V FF K+ I Y G+ +GE FVE +E + K
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFK--KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKA 486
Query: 70 ALKKDRETMGHRYVEVF----KSNNVEMDWVLKHTGPNSPDTAN-----DGFVR------ 114
AL + ++ MG+R+++V K ++D + K S D +G V
Sbjct: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
Query: 115 -LRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
+ +PF +K +++QF G+ + N + + VD G+ G+A VQF +++ A K+ + H+
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
Query: 174 ERIGHRYIEIFKSSRAEVR-THYDPP---RKLMAMQRPGPYDRPG 214
+++ R + + ++R +PP +K + M PG PG
Sbjct: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 288 GHCVHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
G CV+++GLP+ A + +FF L+ V ++I GP+G+ TGE VEF D AA+
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
Query: 346 SKDKANMQHRYVEL 359
+ K M +R++++
Sbjct: 489 CRHKQYMGNRFIQV 502
Score = 48.5 bits (114), Expect = 1e-05
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
++++ +PF S +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
Query: 173 KER-IGHRYIEI 183
+R IG R +++
Sbjct: 918 NDRPIGSRKVKL 929
Score = 48.1 bits (113), Expect = 2e-05
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 105 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
P +D +V + G+PF + ++ FF GL + + + L D GR+ G V+F S +
Sbjct: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQD 355
Query: 165 AEKALKKHKERIGHRYIEI 183
+ALK+++ + RY+E+
Sbjct: 356 TFEALKRNRMLMIQRYVEV 374
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
V + G+P+ A END+ +FF L VH+ GR G V+F + +D A+ +++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 351 NMQHRYVEL 359
M RYVE+
Sbjct: 366 LMIQRYVEV 374
Score = 43.5 bits (101), Expect = 4e-04
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
V+KV+ +P++ S DE+ FF ++ G+ ++ Y +G P+GEA V ES DE A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK--YNEKGMPTGEAMVAFESRDEATAAV 914
Score = 42.7 bits (99), Expect = 7e-04
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
+RL+GLP +I FFSGL I G V G GEAF+ FA+ E A + +
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGG----VHIVGGELGEAFIVFATDEDARLGMMRT 60
Query: 173 KERIGHRYIEIFKSSRAEVRTHYDPPRK 200
I + + SS+ E++ + R+
Sbjct: 61 GGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 37.0 bits (84), Expect = 0.036
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 290 CVHMRGLPYRATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAA--M 345
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F +DA + +
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 346 SKDKANMQHRYVEL 359
+ K N + +V +
Sbjct: 605 HRKKLNGREAFVHV 618
Score = 36.2 bits (82), Expect = 0.062
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
V++++GLP +++ FFS I +G G+ + G GEAF+ ++++ +L +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
Query: 72 KKDRETMGHRYVEVFKSNNVEM 93
+ T+ V + S+ EM
Sbjct: 58 MRTGGTIKGSKVTLLLSSKTEM 79
Score = 35.4 bits (80), Expect = 0.11
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEDAVAA 344
+ ++GLP A DI +FFS L PDG V GEA + FAT EDA
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
Query: 345 MSKDKANMQHRYVELFLNS 363
M + ++ V L L+S
Sbjct: 57 MMRTGGTIKGSKVTLLLSS 75
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 82.0 bits (201), Expect = 1e-15
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 38/220 (17%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
V V G+P+S ++V+ FF ++ + + GR +G V+ S + ALK
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 361
Query: 73 KDRETMGHRYVEVFKSNNVEMDWVL--------KHTGPNS-----PDTA----------- 108
++R M RYVEV S E WV ++ GP+ P T
Sbjct: 362 RNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR 419
Query: 109 -------NDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFA 160
GF V L+GLPF + ++ FF L+IV + I + G++TGE FV+F
Sbjct: 420 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR 479
Query: 161 SQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRK 200
++ + AL +HK+ +G+R+I++ ++ + D RK
Sbjct: 480 NEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRK 519
Score = 80.9 bits (198), Expect = 2e-15
Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 22/225 (9%)
Query: 10 GFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKL 69
GF V ++GLP+ V FF K+ I Y G+ +GE FVE +E + K
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFK--KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKA 486
Query: 70 ALKKDRETMGHRYVEVF----KSNNVEMDWVLKHTGPNSPDTAN-----DGFVR------ 114
AL + ++ MG+R+++V K ++D + K S D +G V
Sbjct: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
Query: 115 -LRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
+ +PF +K +++QF G+ + N + + VD G+ G+A VQF +++ A K+ + H+
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
Query: 174 ERIGHRYIEIFKSSRAEVR-THYDPP---RKLMAMQRPGPYDRPG 214
+++ R + + ++R +PP +K + M PG PG
Sbjct: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 288 GHCVHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
G CV+++GLP+ A + +FF L+ V ++I GP+G+ TGE VEF D AA+
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
Query: 346 SKDKANMQHRYVEL 359
+ K M +R++++
Sbjct: 489 CRHKQYMGNRFIQV 502
Score = 48.5 bits (114), Expect = 1e-05
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
++++ +PF S +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
Query: 173 KER-IGHRYIEI 183
+R IG R +++
Sbjct: 918 NDRPIGSRKVKL 929
Score = 48.1 bits (113), Expect = 2e-05
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 105 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
P +D +V + G+PF + ++ FF GL + + + L D GR+ G V+F S +
Sbjct: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQD 355
Query: 165 AEKALKKHKERIGHRYIEI 183
+ALK+++ + RY+E+
Sbjct: 356 TFEALKRNRMLMIQRYVEV 374
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
V + G+P+ A END+ +FF L VH+ GR G V+F + +D A+ +++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 351 NMQHRYVEL 359
M RYVE+
Sbjct: 366 LMIQRYVEV 374
Score = 43.5 bits (101), Expect = 4e-04
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
V+KV+ +P++ S DE+ FF ++ G+ ++ Y +G P+GEA V ES DE A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK--YNEKGMPTGEAMVAFESRDEATAAV 914
Score = 42.7 bits (99), Expect = 7e-04
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
+RL+GLP +I FFSGL I G V G GEAF+ FA+ E A + +
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGG----VHIVGGELGEAFIVFATDEDARLGMMRT 60
Query: 173 KERIGHRYIEIFKSSRAEVRTHYDPPRK 200
I + + SS+ E++ + R+
Sbjct: 61 GGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 37.0 bits (84), Expect = 0.036
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 290 CVHMRGLPYRATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAA--M 345
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F +DA + +
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 346 SKDKANMQHRYVEL 359
+ K N + +V +
Sbjct: 605 HRKKLNGREAFVHV 618
Score = 36.2 bits (82), Expect = 0.062
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
V++++GLP +++ FFS I +G G+ + G GEAF+ ++++ +L +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
Query: 72 KKDRETMGHRYVEVFKSNNVEM 93
+ T+ V + S+ EM
Sbjct: 58 MRTGGTIKGSKVTLLLSSKTEM 79
Score = 35.4 bits (80), Expect = 0.11
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEDAVAA 344
+ ++GLP A DI +FFS L PDG V GEA + FAT EDA
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
Query: 345 MSKDKANMQHRYVELFLNS 363
M + ++ V L L+S
Sbjct: 57 MMRTGGTIKGSKVTLLLSS 75
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 72.8 bits (177), Expect = 6e-13
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 18/169 (10%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
VK+RG P++ + V F + K IR + G +G FV+ +E+EVK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 73 KDRETMGHRYVEVFKSNNV----------EMDWVLKHTGPN--SPDTANDGFVRLRGLPF 120
+RE MG RY+EVF+ NV W + G N D A G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVD-FQGRSTGEAFVQFASQEIAEKA 168
++E++ + FS + + + P+D + G AF+ F E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Score = 59.7 bits (143), Expect = 5e-09
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 284 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVA 343
+ TT H V +RG P+ TE ++ F +PL PV + I G TG V+F+ E+
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348
Query: 344 AMSKDKANMQHRYVELFLNSTAGASGGA 371
A+ ++ M RY+E+F + GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376
Score = 55.5 bits (132), Expect = 1e-07
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
V+LRG PF +++ +++F + L+ P I + + G TG FV F+++E ++ALK +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 173 KERIGHRYIEIFK 185
+E +G RYIE+F+
Sbjct: 354 REYMGGRYIEVFR 366
Score = 28.9 bits (63), Expect = 9.9
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 293 MRGLPYRATENDIYNFFSPLNPV-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMSK 347
+R LPY +TE D+ FS P+ +H I + G A + F E AV A S+
Sbjct: 406 VRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 72.8 bits (177), Expect = 6e-13
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 18/169 (10%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
VK+RG P++ + V F + K IR + G +G FV+ +E+EVK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 73 KDRETMGHRYVEVFKSNNV----------EMDWVLKHTGPN--SPDTANDGFVRLRGLPF 120
+RE MG RY+EVF+ NV W + G N D A G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVD-FQGRSTGEAFVQFASQEIAEKA 168
++E++ + FS + + + P+D + G AF+ F E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Score = 59.7 bits (143), Expect = 5e-09
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 284 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVA 343
+ TT H V +RG P+ TE ++ F +PL PV + I G TG V+F+ E+
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348
Query: 344 AMSKDKANMQHRYVELFLNSTAGASGGA 371
A+ ++ M RY+E+F + GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376
Score = 55.5 bits (132), Expect = 1e-07
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
V+LRG PF +++ +++F + L+ P I + + G TG FV F+++E ++ALK +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 173 KERIGHRYIEIFK 185
+E +G RYIE+F+
Sbjct: 354 REYMGGRYIEVFR 366
Score = 28.9 bits (63), Expect = 9.9
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 293 MRGLPYRATENDIYNFFSPLNPV-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMSK 347
+R LPY +TE D+ FS P+ +H I + G A + F E AV A S+
Sbjct: 406 VRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 72.8 bits (177), Expect = 6e-13
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 18/169 (10%)
Query: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
VK+RG P++ + V F + K IR + G +G FV+ +E+EVK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 73 KDRETMGHRYVEVFKSNNV----------EMDWVLKHTGPN--SPDTANDGFVRLRGLPF 120
+RE MG RY+EVF+ NV W + G N D A G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 121 GCSKEEIVQFFSGLEIVPNGITLPVD-FQGRSTGEAFVQFASQEIAEKA 168
++E++ + FS + + + P+D + G AF+ F E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Score = 59.7 bits (143), Expect = 5e-09
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 284 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVA 343
+ TT H V +RG P+ TE ++ F +PL PV + I G TG V+F+ E+
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348
Query: 344 AMSKDKANMQHRYVELFLNSTAGASGGA 371
A+ ++ M RY+E+F + GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376
Score = 55.5 bits (132), Expect = 1e-07
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
V+LRG PF +++ +++F + L+ P I + + G TG FV F+++E ++ALK +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 173 KERIGHRYIEIFK 185
+E +G RYIE+F+
Sbjct: 354 REYMGGRYIEVFR 366
Score = 28.9 bits (63), Expect = 9.9
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 293 MRGLPYRATENDIYNFFSPLNPV-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMSK 347
+R LPY +TE D+ FS P+ +H I + G A + F E AV A S+
Sbjct: 406 VRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 56.2 bits (134), Expect = 6e-08
Identities = 67/238 (28%), Positives = 88/238 (36%), Gaps = 35/238 (14%)
Query: 207 PGPYDRPGAGRG--YNSIGRGAGFERMRRGAY---GGGYGGYDDYNGYNDGYGFGSDRFG 261
P P + G GRG GRG GF G Y G GYG Y GYG S G
Sbjct: 638 PPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNAGAGYGSY--------GYGGNSATAG 689
Query: 262 RDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEI 321
Y G S + G GG ++G+ + +G D YN SP+ P +
Sbjct: 690 YSQFYSNGGHSGNASGGGGGGGGGSSGYGSYYQG--------DNYN--SPVPPKHAGKKQ 739
Query: 322 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYEHRYVELFL 381
G+ + +H+ + ++ + G +Y + Y
Sbjct: 740 PHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGKQKGYNHGQGSYSYSNSY----- 794
Query: 382 NSTAGASGGAYGSQMM----GGMGLSNQSSYG-GPASQQLS--GGYGGGYGGQSSMSG 432
NS G G Y + G G S +SYG G AS GGYGGG GG SS G
Sbjct: 795 NSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQG 852
Score = 38.5 bits (88), Expect = 0.013
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 210 YDRPGAGRGYNSIGRG-AGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCF 268
Y G G NS G G A + G YGGG GG Y G GY NY
Sbjct: 813 YSGSGGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGKQGGYS--------QSNYNS 864
Query: 269 SGMSDHRYGDGGSTFQSTTG 288
G S Y S++QS+ G
Sbjct: 865 PG-SGQNYSGPPSSYQSSQG 883
Score = 32.7 bits (73), Expect = 0.69
Identities = 25/58 (43%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 388 SGGAYGSQMMGG----MGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGYDQVLQENS 441
+G YGS GG G S S GG S SGG GGG GG S Y Q NS
Sbjct: 672 AGAGYGSYGYGGNSATAGYSQFYSNGGH-SGNASGGGGGGGGGSSGYGSYYQGDNYNS 728
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 56.2 bits (134), Expect = 6e-08
Identities = 67/238 (28%), Positives = 88/238 (36%), Gaps = 35/238 (14%)
Query: 207 PGPYDRPGAGRG--YNSIGRGAGFERMRRGAY---GGGYGGYDDYNGYNDGYGFGSDRFG 261
P P + G GRG GRG GF G Y G GYG Y GYG S G
Sbjct: 634 PPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNAGAGYGSY--------GYGGNSATAG 685
Query: 262 RDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEI 321
Y G S + G GG ++G+ + +G D YN SP+ P +
Sbjct: 686 YSQFYSNGGHSGNASGGGGGGGGGSSGYGSYYQG--------DNYN--SPVPPKHAGKKQ 735
Query: 322 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYEHRYVELFL 381
G+ + +H+ + ++ + G +Y + Y
Sbjct: 736 PHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGKQKGYNHGQGSYSYSNSY----- 790
Query: 382 NSTAGASGGAYGSQMM----GGMGLSNQSSYG-GPASQQLS--GGYGGGYGGQSSMSG 432
NS G G Y + G G S +SYG G AS GGYGGG GG SS G
Sbjct: 791 NSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQG 848
Score = 38.5 bits (88), Expect = 0.013
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 210 YDRPGAGRGYNSIGRG-AGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCF 268
Y G G NS G G A + G YGGG GG Y G GY NY
Sbjct: 809 YSGSGGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGKQGGYS--------QSNYNS 860
Query: 269 SGMSDHRYGDGGSTFQSTTG 288
G S Y S++QS+ G
Sbjct: 861 PG-SGQNYSGPPSSYQSSQG 879
Score = 32.7 bits (73), Expect = 0.69
Identities = 25/58 (43%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 388 SGGAYGSQMMGG----MGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGYDQVLQENS 441
+G YGS GG G S S GG S SGG GGG GG S Y Q NS
Sbjct: 668 AGAGYGSYGYGGNSATAGYSQFYSNGGH-SGNASGGGGGGGGGSSGYGSYYQGDNYNS 724
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 54.7 bits (130), Expect = 2e-07
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
Query: 117 GLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKA--LKKHKE 174
GL ++ ++++ FS V + G+ G FV F + + A+KA +K H
Sbjct: 104 GLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPI 163
Query: 175 RIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRG 234
+ GHR +E+ K+ P + + G GRG GRG G R + G
Sbjct: 164 Q-GHR-VEVKKAV---------PKEDIYSGGGGGGSRSSRGGRG----GRGRGGGRDQNG 208
Query: 235 AYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGH 289
GG GGY+ Y GY G G G + +G G SD YG+G F S + H
Sbjct: 209 LSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSD--YGNGFGGFGSYSQH 261
Score = 41.2 bits (95), Expect = 0.002
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 214 GAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGY----------GFGSDRFGRD 263
G G GYN+ G G G YG G+GG+ Y+ + Y G GS GR
Sbjct: 226 GGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRS 285
Query: 264 LNYCFSGMSDHRYGDGGSTF 283
+ + G G GGS+F
Sbjct: 286 NSGPYRGGYGGGGGYGGSSF 305
Score = 33.5 bits (75), Expect = 0.40
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 391 AYGSQMMGGMGLSNQSSYGGPA-SQQLSGGY--GGGYGGQS 428
+YG GG G SS+GG + S GGY GGGYGG S
Sbjct: 264 SYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSS 304
Score = 32.3 bits (72), Expect = 0.90
Identities = 42/137 (30%), Positives = 51/137 (37%), Gaps = 16/137 (11%)
Query: 295 GLPYRATENDIYNFFSPLNPVRVHIEIGPD---GRVTGEADVEFATHEDA-VAAMSKDKA 350
GL E D+ FS V EI D G+ G V F H+ A AA+ K
Sbjct: 104 GLKGDVAEGDLIEHFSQFGTVE-KAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHP 162
Query: 351 NMQHRY-VELFLNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYG 409
HR V+ + SGG + +S G G + GG N S G
Sbjct: 163 IQGHRVEVKKAVPKEDIYSGGG----------GGGSRSSRGGRGGRGRGGGRDQNGLSKG 212
Query: 410 GPASQQLSGGYGGGYGG 426
G GGYGGG GG
Sbjct: 213 GGGGYNSYGGYGGGGGG 229
Score = 32.3 bits (72), Expect = 0.90
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 366 GASGGAYEHRYVELFLNSTAGASGGA------YGSQMMG-GMGLSNQSSYGGPASQQLSG 418
G GG Y N+ G GG+ YG+ G G +QSSYG S G
Sbjct: 225 GGGGGGY---------NAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGG 275
Query: 419 GYGGGYGGQSSMSGY 433
G G +GG+S+ Y
Sbjct: 276 GGGSSWGGRSNSGPY 290
Score = 31.6 bits (70), Expect = 1.5
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 382 NSTAGASGGAYGSQM-MGGMGLSNQSSYGGPASQQLSGG--YGGGYGGQSSMS 431
N + GG Y S GG G ++YGG GG YG G+GG S S
Sbjct: 207 NGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYS 259
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 53.5 bits (127), Expect = 4e-07
Identities = 71/282 (25%), Positives = 107/282 (37%), Gaps = 60/282 (21%)
Query: 15 VRGLPWSCSADEVQRFFS------DCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVK 68
+ GL W S ++ + S DC I+ GR G FV + V
Sbjct: 152 IGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPV--------TGRSRGFGFVLFKDAASVD 203
Query: 69 LALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIV 128
L+ + + ++ ++ ++ G P G GL S+E+I
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALK--------GKEPPKKVFVG-----GLSPDTSEEQIK 250
Query: 129 QFFSGLEIVPNGITLPVDFQ-GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
++F + N I LP+D + G F+ + +E +K L+ +IG EI +
Sbjct: 251 EYFGAFGEIEN-IELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
Query: 188 RAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRG------------- 234
EV R+ Q+ G G G GRG G + +G
Sbjct: 310 PKEVY------RQQQQQQKGGRGAAAGGRGGTRGRGRGQG-QNWNQGFNNYYDQGYGNYN 362
Query: 235 -AYGG-----GYGGYDDYNGYNDG-YGFG---SDRFGRDLNY 266
AYGG GYGGYD Y GYN G YG+G +D G+ Y
Sbjct: 363 SAYGGDQNYSGYGGYD-YTGYNYGNYGYGQGYADYSGQQSTY 403
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 52.4 bits (124), Expect = 8e-07
Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 50/261 (19%)
Query: 15 VRGLPWSCSADEVQRFFS------DCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVK 68
+ GL W + +++ +FS DC ++ + GR G FV + + V
Sbjct: 101 IGGLSWDTTKKDLKDYFSKFGEVVDCTLK--------LDPITGRSRGFGFVLFKESESVD 152
Query: 69 LALKKDRETMGHRYVEVFKSNNVEMDWVLKH--TGPNSPDTANDGFVRLRGLPFGCSKEE 126
+ + + + ++ ++ ++ +K G SPDT +E+
Sbjct: 153 KVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTP---------------EEK 197
Query: 127 IVQFFSGLEIVPNGITLPVDFQ-GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 185
I ++F G V + I LP+D + + G F+ F +E +K ++K +G EI
Sbjct: 198 IREYFGGFGEVES-IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI-- 254
Query: 186 SSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYN-SIGRGAGFERMRRGAYG------- 237
+V + ++ G + GRG S G+ YG
Sbjct: 255 ----KVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQ 310
Query: 238 --GGYGGYDDYNGYNDGYGFG 256
GGYGGYD Y GYN+ YG+G
Sbjct: 311 GYGGYGGYD-YTGYNNYYGYG 330
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,974,165
Number of Sequences: 37866
Number of extensions: 958778
Number of successful extensions: 5773
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 3281
Number of HSP's gapped (non-prelim): 1533
length of query: 449
length of database: 18,247,518
effective HSP length: 106
effective length of query: 343
effective length of database: 14,233,722
effective search space: 4882166646
effective search space used: 4882166646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.