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Search of human proteins with 5031711
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5031711 translation factor sui1 homolog [Homo sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5031711 translation factor sui1 homolog [Homo sapiens] 231 9e-62
gi|5032133 eukaryotic translation initiation factor 1 [Homo sapi... 219 3e-58
gi|239753006 PREDICTED: similar to eukaryotic translation initia... 196 4e-51
gi|239747538 PREDICTED: similar to eukaryotic translation initia... 196 4e-51
gi|239741414 PREDICTED: similar to eukaryotic translation initia... 196 4e-51
gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member... 30 0.32
gi|7657176 canopy 2 homolog [Homo sapiens] 27 3.5
gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Hom... 27 4.6
gi|38327518 BTB and kelch domain containing 3 [Homo sapiens] 26 7.8
gi|38327516 BTB and kelch domain containing 3 [Homo sapiens] 26 7.8
gi|8923758 carbohydrate sulfotransferase 11 [Homo sapiens] 26 7.8
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 26 7.8
gi|65507403 SEC15-like 1 isoform a [Homo sapiens] 26 7.8
gi|62243652 SEC15-like 1 isoform b [Homo sapiens] 26 7.8
gi|41393593 aarF domain containing kinase 5 [Homo sapiens] 26 7.8
>gi|5031711 translation factor sui1 homolog [Homo sapiens]
Length = 113
Score = 231 bits (589), Expect = 9e-62
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MSTIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60
MSTIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
Sbjct: 1 MSTIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60
Query: 61 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF
Sbjct: 61 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
>gi|5032133 eukaryotic translation initiation factor 1 [Homo
sapiens]
Length = 113
Score = 219 bits (559), Expect = 3e-58
Identities = 104/113 (92%), Positives = 110/113 (97%)
Query: 1 MSTIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60
MS IQNL SFDPFADA+KGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
Sbjct: 1 MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60
Query: 61 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL+E+G+ K++QLKVHGF
Sbjct: 61 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
>gi|239753006 PREDICTED: similar to eukaryotic translation
initiation factor 1 [Homo sapiens]
Length = 136
Score = 196 bits (497), Expect = 4e-51
Identities = 96/110 (87%), Positives = 102/110 (92%), Gaps = 1/110 (0%)
Query: 4 IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 63
IQNL SFDPFADA+KGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF
Sbjct: 28 IQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 87
Query: 64 KKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
K FACNGTVIEHPEYGEVIQ QGDQ NICQFL+E+G+ K++QLKVH F
Sbjct: 88 -KNFACNGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 136
>gi|239747538 PREDICTED: similar to eukaryotic translation
initiation factor 1 [Homo sapiens]
Length = 136
Score = 196 bits (497), Expect = 4e-51
Identities = 96/110 (87%), Positives = 102/110 (92%), Gaps = 1/110 (0%)
Query: 4 IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 63
IQNL SFDPFADA+KGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF
Sbjct: 28 IQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 87
Query: 64 KKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
K FACNGTVIEHPEYGEVIQ QGDQ NICQFL+E+G+ K++QLKVH F
Sbjct: 88 -KNFACNGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 136
>gi|239741414 PREDICTED: similar to eukaryotic translation
initiation factor 1 [Homo sapiens]
Length = 136
Score = 196 bits (497), Expect = 4e-51
Identities = 96/110 (87%), Positives = 102/110 (92%), Gaps = 1/110 (0%)
Query: 4 IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 63
IQNL SFDPFADA+KGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF
Sbjct: 28 IQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 87
Query: 64 KKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
K FACNGTVIEHPEYGEVIQ QGDQ NICQFL+E+G+ K++QLKVH F
Sbjct: 88 -KNFACNGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 136
>gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member 2
[Homo sapiens]
Length = 1545
Score = 30.4 bits (67), Expect = 0.32
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 70 NGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVH 111
NGT++E Y ++ +G+ KN+ FL G EE+ VH
Sbjct: 836 NGTIVEKGSYSALLAKKGEFAKNLKTFLRHTG--PEEEATVH 875
>gi|7657176 canopy 2 homolog [Homo sapiens]
Length = 182
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 32 HIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRK 91
++R+ RNG + +QGI D D + KFAC V E+ + E+I+ +
Sbjct: 105 YVRVVGRNGESSELDLQGIRIDSDISGTL-----KFACESIVEEYED--ELIEFFSREAD 157
Query: 92 NI 93
N+
Sbjct: 158 NV 159
>gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Homo
sapiens]
Length = 1249
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 26 GTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69
G Y + + + + + TL T QG+ +D ++LV KK AC
Sbjct: 307 GKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKAC 350
>gi|38327518 BTB and kelch domain containing 3 [Homo sapiens]
Length = 612
Score = 25.8 bits (55), Expect = 7.8
Identities = 28/107 (26%), Positives = 37/107 (34%), Gaps = 23/107 (21%)
Query: 2 STIQNLQSFDPFADATKG--------DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADD 53
S +++ FD DA K D P+ TE YI I + NG T I D
Sbjct: 260 SLLKSTNCFDIIMDAIKCVQGSGGLFPDARPSTTEKYIFIHKTEENGENQYTFCYNIKSD 319
Query: 54 YDKKKLVKAFKKKFACNGTVIEHP-----EYGEVIQLQGDQRKNICQ 95
K +I+ P YGE I L G + C+
Sbjct: 320 ----------SWKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGKCCR 356
>gi|38327516 BTB and kelch domain containing 3 [Homo sapiens]
Length = 612
Score = 25.8 bits (55), Expect = 7.8
Identities = 28/107 (26%), Positives = 37/107 (34%), Gaps = 23/107 (21%)
Query: 2 STIQNLQSFDPFADATKG--------DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADD 53
S +++ FD DA K D P+ TE YI I + NG T I D
Sbjct: 260 SLLKSTNCFDIIMDAIKCVQGSGGLFPDARPSTTEKYIFIHKTEENGENQYTFCYNIKSD 319
Query: 54 YDKKKLVKAFKKKFACNGTVIEHP-----EYGEVIQLQGDQRKNICQ 95
K +I+ P YGE I L G + C+
Sbjct: 320 ----------SWKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGKCCR 356
>gi|8923758 carbohydrate sulfotransferase 11 [Homo sapiens]
Length = 352
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 57 KKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVG 101
++LV A++ KF + H YG I + QRKN Q L G
Sbjct: 190 ERLVSAYRNKFTQKYNISFHKRYGTKIIKR--QRKNATQEALRKG 232
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 25.8 bits (55), Expect = 7.8
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 6 NLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKK 65
NL DP D+ +P G D ++ + R+GR + V+G + L K
Sbjct: 1164 NLWVTDPTPDSLHLSWTVPEGQFDTFMVQYRDRDGRPQVVPVEGPERSFVVSSLDPDHKY 1223
Query: 66 KFACNGTVIEHPEYG 80
+F G + YG
Sbjct: 1224 RFTLFG-IANKKRYG 1237
>gi|65507403 SEC15-like 1 isoform a [Homo sapiens]
Length = 804
Score = 25.8 bits (55), Expect = 7.8
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 27 TEDYIHIRIQQRNGRKTLTTVQ---GIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVI 83
TED I RIQQRN + +Q + + Y K K + K+ ++ T+ E E +
Sbjct: 112 TEDIIRCRIQQRNITTVVEKLQLCLPVLEMYSKLKEQMSAKRYYSALKTM----EQLENV 167
Query: 84 QLQGDQRKNICQFLLE 99
+ CQ ++E
Sbjct: 168 YFPWVSQYRFCQLMIE 183
>gi|62243652 SEC15-like 1 isoform b [Homo sapiens]
Length = 799
Score = 25.8 bits (55), Expect = 7.8
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 27 TEDYIHIRIQQRNGRKTLTTVQ---GIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVI 83
TED I RIQQRN + +Q + + Y K K + K+ ++ T+ E E +
Sbjct: 107 TEDIIRCRIQQRNITTVVEKLQLCLPVLEMYSKLKEQMSAKRYYSALKTM----EQLENV 162
Query: 84 QLQGDQRKNICQFLLE 99
+ CQ ++E
Sbjct: 163 YFPWVSQYRFCQLMIE 178
>gi|41393593 aarF domain containing kinase 5 [Homo sapiens]
Length = 580
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 48 QGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRK 91
QG+A +KL+KAF ++ G + P G V+ +G K
Sbjct: 332 QGLAVHDIAEKLIKAFAEQIFYTGFIHSDPHPGNVLVRKGPDGK 375
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,094,852
Number of Sequences: 37866
Number of extensions: 157616
Number of successful extensions: 302
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 16
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.