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Search of human proteins with 49355757
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|49355757 SFT2 domain containing 3 [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|49355757 SFT2 domain containing 3 [Homo sapiens] 420 e-118
gi|31881740 solute carrier family 12 (potassium/chloride transpo... 35 0.048
gi|21389443 transmembrane protein 125 [Homo sapiens] 33 0.14
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 32 0.31
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 32 0.31
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 31 0.70
gi|4506575 retinal outer segment membrane protein 1 [Homo sapiens] 31 0.91
gi|121949802 cancer/testis antigen family 47, member A1 [Homo sa... 30 1.2
gi|121949798 cancer/testis antigen family 47, member A2 [Homo sa... 30 1.2
gi|121949773 cancer/testis antigen family 47, member A3 [Homo sa... 30 1.2
gi|121949771 cancer/testis antigen family 47, member A4 [Homo sa... 30 1.2
gi|121949796 cancer/testis antigen family 47, member A5 [Homo sa... 30 1.2
gi|121949794 cancer/testis antigen family 47, member A6 [Homo sa... 30 1.2
gi|121949792 cancer/testis antigen family 47, member A7 [Homo sa... 30 1.2
gi|121949790 cancer/testis antigen family 47, member A8 [Homo sa... 30 1.2
gi|121949788 cancer/testis antigen family 47, member A9 [Homo sa... 30 1.2
gi|121949786 cancer/testis antigen family 47, member A10 [Homo s... 30 1.2
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ... 30 1.2
gi|169160919 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ... 30 1.2
gi|169162159 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ... 30 1.2
gi|169161152 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|122114660 cancer/testis antigen family 47, member A11 [Homo s... 30 1.2
gi|63054860 RCC1 domain containing 1 [Homo sapiens] 30 1.2
gi|63054858 RCC1 domain containing 1 [Homo sapiens] 30 1.2
gi|25121980 dispatched B [Homo sapiens] 30 1.2
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens] 30 1.5
gi|24430210 interleukin 17 receptor E isoform 1 [Homo sapiens] 30 2.0
>gi|49355757 SFT2 domain containing 3 [Homo sapiens]
Length = 215
Score = 420 bits (1079), Expect = e-118
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MADLHRQLQEYLAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPAES 60
MADLHRQLQEYLAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPAES
Sbjct: 1 MADLHRQLQEYLAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPAES 60
Query: 61 AAAGLTCLPSVTRGQRLAAGGGCLLLAALCFGLAALYAPVLLLRARKFALLWSLGSALAL 120
AAAGLTCLPSVTRGQRLAAGGGCLLLAALCFGLAALYAPVLLLRARKFALLWSLGSALAL
Sbjct: 61 AAAGLTCLPSVTRGQRLAAGGGCLLLAALCFGLAALYAPVLLLRARKFALLWSLGSALAL 120
Query: 121 AGSALLRGGAACGRLLRCEEAPSRPALLYMAALGATLFAALGLRSTLLTVLGAGAQVAAL 180
AGSALLRGGAACGRLLRCEEAPSRPALLYMAALGATLFAALGLRSTLLTVLGAGAQVAAL
Sbjct: 121 AGSALLRGGAACGRLLRCEEAPSRPALLYMAALGATLFAALGLRSTLLTVLGAGAQVAAL 180
Query: 181 LAALVGLLPWGGGTALRLALGRLGRGAGLAKVLPV 215
LAALVGLLPWGGGTALRLALGRLGRGAGLAKVLPV
Sbjct: 181 LAALVGLLPWGGGTALRLALGRLGRGAGLAKVLPV 215
>gi|31881740 solute carrier family 12 (potassium/chloride
transporters), member 9 [Homo sapiens]
Length = 914
Score = 35.0 bits (79), Expect = 0.048
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 92 GLAALYAPVLLLRARKFALLWSLGSALALAGSALLRGGAA---CGRLLRCEEAPSRPALL 148
G A L + +L F L ++ S A+A + ++GG A R L E S +
Sbjct: 65 GHAGLLQALAMLLVAYFILALTVLSVCAIATNGAVQGGGAYFMISRTLGPEVGGSIGLMF 124
Query: 149 YMAALGATLFAALGLRSTLLTVLGAGAQVAALLAALVGLLPWG---GGTALRLALGRLGR 205
Y+A + + LGL ++L V GA A + L L W G L L G
Sbjct: 125 YLANVCGCAVSLLGLVESVLDVFGADATGPSGLRVLPQGYGWNLLYGSLLLGLVGGVCTL 184
Query: 206 GAGL 209
GAGL
Sbjct: 185 GAGL 188
>gi|21389443 transmembrane protein 125 [Homo sapiens]
Length = 219
Score = 33.5 bits (75), Expect = 0.14
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 60 SAAAGLTCLPSVTRGQRLAAGGGCLLLAALCFGLAALYAPVLLLR-------ARKFALLW 112
SA + C+ L +GGG L L GL L + L AR A +
Sbjct: 89 SAVQDMNCIRQAHHVALLRSGGGADALVVLLSGLVLLVTGLTLAGLAAAPAPARPLAAML 148
Query: 113 SLGSALALAGSALLRG 128
S+G ALA GS LL G
Sbjct: 149 SVGIALAALGSLLLLG 164
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 32.3 bits (72), Expect = 0.31
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 20/92 (21%)
Query: 54 ARSPAESAAAGLTCLPSVTRGQRLAAGGGCLLLAALCFGLAALYAPVLLLRARKFALLWS 113
AR+ + AGL PS RG RL +GG L LRAR
Sbjct: 18 ARTVRPAMLAGLGPGPSPRRG-RLPSGG-------------------LRLRARPGRRALG 57
Query: 114 LGSALALAGSALLRGGAACGRLLRCEEAPSRP 145
L S L LA +L+ +A R + C AP RP
Sbjct: 58 LPSPLELAAPSLVPNASASPRPVSCRRAPPRP 89
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 32.3 bits (72), Expect = 0.31
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 20/92 (21%)
Query: 54 ARSPAESAAAGLTCLPSVTRGQRLAAGGGCLLLAALCFGLAALYAPVLLLRARKFALLWS 113
AR+ + AGL PS RG RL +GG L LRAR
Sbjct: 18 ARTVRPAMLAGLGPGPSPRRG-RLPSGG-------------------LRLRARPGRRALG 57
Query: 114 LGSALALAGSALLRGGAACGRLLRCEEAPSRP 145
L S L LA +L+ +A R + C AP RP
Sbjct: 58 LPSPLELAAPSLVPNASASPRPVSCRRAPPRP 89
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 31.2 bits (69), Expect = 0.70
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 20/82 (24%)
Query: 127 RGGAACGRLLRCEEAPSRPA-LLYMAALGATLFAALGLRSTLLTVLGAGAQVAALLAALV 185
R G A GR +R +PS P LL LG T G LL L
Sbjct: 158 RPGPAAGRRVR--RSPSFPPFLLAQTRLGRT-----------------GPLALCLLLLLH 198
Query: 186 GLLPWGGGTALRLALGRLGRGA 207
G + GGG+ +LA GR GR A
Sbjct: 199 GAMRLGGGSREKLACGRAGRAA 220
>gi|4506575 retinal outer segment membrane protein 1 [Homo sapiens]
Length = 351
Score = 30.8 bits (68), Expect = 0.91
Identities = 51/133 (38%), Positives = 58/133 (43%), Gaps = 24/133 (18%)
Query: 98 APVLLL------RARKFALLWSLGSALALAGSA-LLRGGAACGRL--LRCEEAPS-RPAL 147
APVL L R R LW L LALAG LL G +L L APS + +
Sbjct: 2 APVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFPV 61
Query: 148 LYMAALGATLFAALGLRSTLLTVLGAGAQVAALLAALVGLLPWGGGTALRLALGRLGRGA 207
L AAL A A+ L + L +G GA A+L AAL PW G L G G G
Sbjct: 62 LPQAALAA---GAVALGTGL---VGVGASRASLNAALYP--PWRGVLGPLLVAGTAGGGG 113
Query: 208 ------GLAKVLP 214
GLA LP
Sbjct: 114 LLVVALGLALALP 126
>gi|121949802 cancer/testis antigen family 47, member A1 [Homo
sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 LAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPA--ESAAAGLTCLP 69
L Q A P A P AE A EP + AEE L A PA E A T
Sbjct: 188 LIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPE 247
Query: 70 SVTRGQ 75
VT+ Q
Sbjct: 248 EVTKSQ 253
>gi|121949798 cancer/testis antigen family 47, member A2 [Homo
sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 LAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPA--ESAAAGLTCLP 69
L Q A P A P AE A EP + AEE L A PA E A T
Sbjct: 188 LIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPE 247
Query: 70 SVTRGQ 75
VT+ Q
Sbjct: 248 EVTKSQ 253
>gi|121949773 cancer/testis antigen family 47, member A3 [Homo
sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 LAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPA--ESAAAGLTCLP 69
L Q A P A P AE A EP + AEE L A PA E A T
Sbjct: 188 LIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPE 247
Query: 70 SVTRGQ 75
VT+ Q
Sbjct: 248 EVTKSQ 253
>gi|121949771 cancer/testis antigen family 47, member A4 [Homo
sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 LAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPA--ESAAAGLTCLP 69
L Q A P A P AE A EP + AEE L A PA E A T
Sbjct: 188 LIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPE 247
Query: 70 SVTRGQ 75
VT+ Q
Sbjct: 248 EVTKSQ 253
>gi|121949796 cancer/testis antigen family 47, member A5 [Homo
sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 LAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPA--ESAAAGLTCLP 69
L Q A P A P AE A EP + AEE L A PA E A T
Sbjct: 188 LIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPE 247
Query: 70 SVTRGQ 75
VT+ Q
Sbjct: 248 EVTKSQ 253
>gi|121949794 cancer/testis antigen family 47, member A6 [Homo
sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 LAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPA--ESAAAGLTCLP 69
L Q A P A P AE A EP + AEE L A PA E A T
Sbjct: 188 LIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPE 247
Query: 70 SVTRGQ 75
VT+ Q
Sbjct: 248 EVTKSQ 253
>gi|121949792 cancer/testis antigen family 47, member A7 [Homo
sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 LAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPA--ESAAAGLTCLP 69
L Q A P A P AE A EP + AEE L A PA E A T
Sbjct: 188 LIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPE 247
Query: 70 SVTRGQ 75
VT+ Q
Sbjct: 248 EVTKSQ 253
>gi|121949790 cancer/testis antigen family 47, member A8 [Homo
sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 LAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPA--ESAAAGLTCLP 69
L Q A P A P AE A EP + AEE L A PA E A T
Sbjct: 188 LIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPE 247
Query: 70 SVTRGQ 75
VT+ Q
Sbjct: 248 EVTKSQ 253
>gi|121949788 cancer/testis antigen family 47, member A9 [Homo
sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 LAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPA--ESAAAGLTCLP 69
L Q A P A P AE A EP + AEE L A PA E A T
Sbjct: 188 LIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPE 247
Query: 70 SVTRGQ 75
VT+ Q
Sbjct: 248 EVTKSQ 253
>gi|121949786 cancer/testis antigen family 47, member A10 [Homo
sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 LAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPA--ESAAAGLTCLP 69
L Q A P A P AE A EP + AEE L A PA E A T
Sbjct: 188 LIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPE 247
Query: 70 SVTRGQ 75
VT+ Q
Sbjct: 248 EVTKSQ 253
>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
sapiens]
Length = 238
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 1 MADLHRQLQEYLAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPAES 60
+A + R ++ G+AG PA L A + P P EE GRAG W RSP E+
Sbjct: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASP--PPGEE--GRAG---AW-RSPGEA 138
Query: 61 AAA 63
AA
Sbjct: 139 GAA 141
>gi|169160919 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 30.4 bits (67), Expect = 1.2
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 92 GLAALYAPVLLLRARKFALLWSLGSALALAGSALLRGGAACGRLLRCEEAPSRPALLYMA 151
GLAAL A V LL AR AL+ A A A +AL R+ R +A
Sbjct: 266 GLAALGAHVGLL-ARVHALVLHQVRAPAEALAALATAVRLLARVDALVVGQMRAEAEGLA 324
Query: 152 ALGATLFAALGLRSTLLTVLGAGAQVAALLAALVGLL 188
ALGA + +++ +L +GA A+ A + A VG L
Sbjct: 325 ALGARVGLLARVQAPVLEQVGAPAEALAAVGAQVGPL 361
>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
sapiens]
Length = 238
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 1 MADLHRQLQEYLAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPAES 60
+A + R ++ G+AG PA L A + P P EE GRAG W RSP E+
Sbjct: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASP--PPGEE--GRAG---AW-RSPGEA 138
Query: 61 AAA 63
AA
Sbjct: 139 GAA 141
>gi|169162159 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 30.4 bits (67), Expect = 1.2
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 92 GLAALYAPVLLLRARKFALLWSLGSALALAGSALLRGGAACGRLLRCEEAPSRPALLYMA 151
GLAAL A V LL AR AL+ A A A +AL R+ R +A
Sbjct: 266 GLAALGAHVGLL-ARVHALVLHQVRAPAEALAALATAVRLLARVDALVVGQMRAEAEGLA 324
Query: 152 ALGATLFAALGLRSTLLTVLGAGAQVAALLAALVGLL 188
ALGA + +++ +L +GA A+ A + A VG L
Sbjct: 325 ALGARVGLLARVQAPVLEQVGAPAEALAAVGAQVGPL 361
>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
sapiens]
Length = 238
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 1 MADLHRQLQEYLAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPAES 60
+A + R ++ G+AG PA L A + P P EE GRAG W RSP E+
Sbjct: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASP--PPGEE--GRAG---AW-RSPGEA 138
Query: 61 AAA 63
AA
Sbjct: 139 GAA 141
>gi|169161152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 30.4 bits (67), Expect = 1.2
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 92 GLAALYAPVLLLRARKFALLWSLGSALALAGSALLRGGAACGRLLRCEEAPSRPALLYMA 151
GLAAL A V LL AR AL+ A A A +AL R+ R +A
Sbjct: 266 GLAALGAHVGLL-ARVHALVLHQVRAPAEALAALATAVRLLARVDALVVGQMRAEAEGLA 324
Query: 152 ALGATLFAALGLRSTLLTVLGAGAQVAALLAALVGLL 188
ALGA + +++ +L +GA A+ A + A VG L
Sbjct: 325 ALGARVGLLARVQAPVLEQVGAPAEALAAVGAQVGPL 361
>gi|122114660 cancer/testis antigen family 47, member A11 [Homo
sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 LAQGKAGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPA--ESAAAGLTCLP 69
L Q A P A P AE A EP + AEE L A PA E A T
Sbjct: 188 LIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPE 247
Query: 70 SVTRGQ 75
VT+ Q
Sbjct: 248 EVTKSQ 253
>gi|63054860 RCC1 domain containing 1 [Homo sapiens]
Length = 376
Score = 30.4 bits (67), Expect = 1.2
Identities = 49/162 (30%), Positives = 58/162 (35%), Gaps = 32/162 (19%)
Query: 71 VTRGQRLAAGGGCLLLAALCFGLAALYAPVLLLRARKF--ALLWSLGSALALAGSALLR- 127
VTRG RL G A C A + +LRA ALL + AL G L
Sbjct: 54 VTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQ 113
Query: 128 -------------GGAACGRL--LRCEEAPSRPALLYMAALGATLFAALGLRSTLLTVLG 172
G A GRL L C A P + L L A L
Sbjct: 114 NVVPEAEGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQ---------LE 164
Query: 173 AGAQVAALLAALVGLLPWGGGTALRLALGRLGRGAGLAKVLP 214
GA+ A LL A + WGGG G+LG G A++ P
Sbjct: 165 LGAEHALLLDAAGQVFSWGGGRH-----GQLGHGTLEAELEP 201
>gi|63054858 RCC1 domain containing 1 [Homo sapiens]
Length = 376
Score = 30.4 bits (67), Expect = 1.2
Identities = 49/162 (30%), Positives = 58/162 (35%), Gaps = 32/162 (19%)
Query: 71 VTRGQRLAAGGGCLLLAALCFGLAALYAPVLLLRARKF--ALLWSLGSALALAGSALLR- 127
VTRG RL G A C A + +LRA ALL + AL G L
Sbjct: 54 VTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQ 113
Query: 128 -------------GGAACGRL--LRCEEAPSRPALLYMAALGATLFAALGLRSTLLTVLG 172
G A GRL L C A P + L L A L
Sbjct: 114 NVVPEAEGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQ---------LE 164
Query: 173 AGAQVAALLAALVGLLPWGGGTALRLALGRLGRGAGLAKVLP 214
GA+ A LL A + WGGG G+LG G A++ P
Sbjct: 165 LGAEHALLLDAAGQVFSWGGGRH-----GQLGHGTLEAELEP 201
>gi|25121980 dispatched B [Homo sapiens]
Length = 1401
Score = 30.4 bits (67), Expect = 1.2
Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 40 AEEWLGRAGLRWTWARSPAE--SAAAGLTCLPSVTRGQRLAAGGGCLLLAAL-----CFG 92
AE + GLR W S E S L+ P+V G LA LLL F
Sbjct: 933 AELGMAPPGLRRGWFTSRLELYSLQHSLSTEPAVVLGLALALAFATLLLGTWNVPLSLFS 992
Query: 93 LAALYAPVLLLRARKFALLWSLGSALALAGSA 124
+AA+ VLL L W L +A AL SA
Sbjct: 993 VAAVAGTVLLTVGLLVLLEWQLNTAEALFLSA 1024
>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 30.0 bits (66), Expect = 1.5
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 111 LWSLGSALALAG--SALLRGGAACGRLLRCEEAPSRPALLYMAALGATLFAALGLRSTLL 168
+W+ G LA AG +++ + GR+ EEA A+ GA A+G + L
Sbjct: 74 IWAAGGGLAAAGERNSVRAVSFSSGRVGVREEAAGHLAVGAAGLTGAHADLAVGRGAELA 133
Query: 169 TVLGAGAQVAALL--------AALVGLLPWGGGTALRLALGRLGRGAG 208
+LGA A AA + AA L+ A LA GRL G G
Sbjct: 134 QLLGADAAAAAAVQHEAHARRAARRRLVRAPARPAAVLADGRLQGGQG 181
>gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens]
Length = 803
Score = 30.0 bits (66), Expect = 1.5
Identities = 38/143 (26%), Positives = 50/143 (34%), Gaps = 23/143 (16%)
Query: 17 AGGPAAAEPLLAAEKAEEPGDRPAEEWLGRAGLRWTWARSPAESAAAGLTCLPSVTRGQR 76
AG AA P+L E E PG + E +PA A G CL +V
Sbjct: 107 AGSGQAAGPVLREEAEEGPGLQGGES-----------GANPAGPTALGPRCLSAVPTPAP 155
Query: 77 LAAGGGCLLLAALCFGLAALYAPVLLLRARKFAL--------LWSLGSALALAGSALLRG 128
++A G AA G ++ LLLR L W G+A A L+
Sbjct: 156 ISAPGP----AAAFAGTVTIHNQDLLLRFENGVLTLATPPPHAWEPGAAPAQQPGCLIAP 211
Query: 129 GAACGRLLRCEEAPSRPALLYMA 151
A + P P L +A
Sbjct: 212 QAGFPHAAHPGDCPELPPDLLLA 234
>gi|24430210 interleukin 17 receptor E isoform 1 [Homo sapiens]
Length = 667
Score = 29.6 bits (65), Expect = 2.0
Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 97 YAPVLLLRARKFALLWSLGSALALAGSALLRGGAACGRLLRCEEAPSRPALLYMAALGAT 156
Y + LL ALL LG LAL G +L A S + AL
Sbjct: 452 YRHLGLLILALLALLTLLGVVLALTCRRPQSGPGPARPVLLLHAADSEAQRRLVGALAEL 511
Query: 157 LFAALGLRSTLLTVLGAGAQVAALLAALVGLLPWGGGTALRLA 199
L AALG ++ L G VA VG LPW R+A
Sbjct: 512 LRAALGGGRDVIVDLWEGRHVAR-----VGPLPWLWAARTRVA 549
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,356,307
Number of Sequences: 37866
Number of extensions: 385765
Number of successful extensions: 1519
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1493
Number of HSP's gapped (non-prelim): 73
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.