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Search of human proteins with 4885657
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885657 X-ray repair cross complementing protein 2 [Homo
sapiens]
(280 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885657 X-ray repair cross complementing protein 2 [Homo sapi... 568 e-162
gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens] 60 2e-09
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens] 54 2e-07
gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens] 54 2e-07
gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens] 54 2e-07
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens] 52 8e-07
gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens] 47 2e-05
gi|153946430 X-ray repair cross complementing protein 3 [Homo sa... 35 0.096
gi|153946427 X-ray repair cross complementing protein 3 [Homo sa... 35 0.096
gi|4885659 X-ray repair cross complementing protein 3 [Homo sapi... 35 0.096
gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens] 33 0.28
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens] 33 0.28
gi|191252801 WDFY family member 4 [Homo sapiens] 33 0.28
gi|226371754 katanin p60 subunit A-like 2 [Homo sapiens] 31 1.4
gi|224589077 hypothetical protein LOC285600 isoform 1 [Homo sapi... 28 6.8
gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens] 28 6.8
gi|27734815 hypothetical protein LOC285600 isoform 2 [Homo sapiens] 28 6.8
>gi|4885657 X-ray repair cross complementing protein 2 [Homo
sapiens]
Length = 280
Score = 568 bits (1463), Expect = e-162
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MCSAFHRAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYH 60
MCSAFHRAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYH
Sbjct: 1 MCSAFHRAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYH 60
Query: 61 LTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSSEEIIKYCLGRFFLVYC 120
LTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSSEEIIKYCLGRFFLVYC
Sbjct: 61 LTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSSEEIIKYCLGRFFLVYC 120
Query: 121 SSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQCL 180
SSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQCL
Sbjct: 121 SSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQCL 180
Query: 181 EKLVNDYRLVLFATTQTIMQKASSSSEEPSHASRRLCDVDIDYRPYLCKAWQQLVKHRMF 240
EKLVNDYRLVLFATTQTIMQKASSSSEEPSHASRRLCDVDIDYRPYLCKAWQQLVKHRMF
Sbjct: 181 EKLVNDYRLVLFATTQTIMQKASSSSEEPSHASRRLCDVDIDYRPYLCKAWQQLVKHRMF 240
Query: 241 FSKQDDSQSSNQFSLVSRCLKSNSLKKHFFIIGESGVEFC 280
FSKQDDSQSSNQFSLVSRCLKSNSLKKHFFIIGESGVEFC
Sbjct: 241 FSKQDDSQSSNQFSLVSRCLKSNSLKKHFFIIGESGVEFC 280
>gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
Length = 339
Score = 60.5 bits (145), Expect = 2e-09
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 41 GDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 100
G I E G TGKT++ + L C LP GG E + ++IDT+ F RL+ + E
Sbjct: 120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG 179
Query: 101 SQSSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRV 160
S+ + R F ++ H LY +M LLI+DS +A Y D
Sbjct: 180 LSGSDVLDNVAYARAF-----NTDHQTQLLYQASAMMV-ESRYALLIVDSATALYRTDYS 233
Query: 161 NGGESVNLQESTLRKCSQCLEKLVNDYRLVLFATTQTIMQ 200
GE ++ ++ L + + L +L +++ + + T Q + Q
Sbjct: 234 GRGE-LSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ 272
>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
Length = 384
Score = 53.5 bits (127), Expect = 2e-07
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 41 GDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 100
G + E GP G GKT+ ++ LP + GGLE V++IDT+ F RLV I E R
Sbjct: 101 GSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRF 160
Query: 101 SQ--SSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSA 153
+ ++EE + + L + +L + SLE S + L+ILDS+++
Sbjct: 161 PRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS-KGIKLVILDSVAS 214
>gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
Length = 350
Score = 53.5 bits (127), Expect = 2e-07
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 41 GDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 100
G + E GP G GKT+ ++ LP + GGLE V++IDT+ F RLV I E R
Sbjct: 101 GSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRF 160
Query: 101 SQ--SSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSA 153
+ ++EE + + L + +L + SLE S + L+ILDS+++
Sbjct: 161 PRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS-KGIKLVILDSVAS 214
>gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]
Length = 350
Score = 53.5 bits (127), Expect = 2e-07
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 41 GDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 100
G + E GP G GKT+ ++ LP + GGLE V++IDT+ F RLV I E R
Sbjct: 101 GSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRF 160
Query: 101 SQ--SSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSA 153
+ ++EE + + L + +L + SLE S + L+ILDS+++
Sbjct: 161 PRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS-KGIKLVILDSVAS 214
>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
Length = 376
Score = 51.6 bits (122), Expect = 8e-07
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 45 EFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTIL-------- 96
E G G GKT++ L +P+ GG+ E +FIDT+ F + R+V +
Sbjct: 122 EICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQ 181
Query: 97 ---------EHRLSQSSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLI 147
EHR + + L + C T LL +Y L H + L+I
Sbjct: 182 LIAEKHKGEEHR-KALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI 240
Query: 148 LDSLSAFYWIDRVNGGESVNLQESTLRKCSQCLEKLVNDYRLVLFATTQ 196
+D ++ + D + ++L+ L +Q + L N++RL + T Q
Sbjct: 241 VDGIAFPFRHDL----DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQ 285
>gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]
Length = 340
Score = 47.0 bits (110), Expect = 2e-05
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 43 ILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQ 102
I E G TGKT++ + L LP + G +++FIDT+ F RL I + R +
Sbjct: 121 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD-RFNV 179
Query: 103 SSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLC-LLILDSLSAFYWIDRVN 161
+ + L +S H + L + + F + LLI+DS+ A + +D
Sbjct: 180 DHDAV----LDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG 235
Query: 162 GGESVNLQESTLRKCSQCLEKLVNDYRLVLFATTQ 196
GE Q+ + S+ L+K+ +Y + +F T Q
Sbjct: 236 RGELAERQQKLAQMLSR-LQKISEEYNVAVFVTNQ 269
>gi|153946430 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 34.7 bits (78), Expect = 0.096
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 38 PVHGDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILE 97
P+ G I E G GKT++ L P+ GGLE ++I T+ F RL ++
Sbjct: 98 PLDG-ITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMA 156
Query: 98 H----RLSQSSEEIIKYCLG-RFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLS 152
R E + K G + F+ + + LL + + S L+++DS++
Sbjct: 157 QQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVA 216
Query: 153 A 153
A
Sbjct: 217 A 217
>gi|153946427 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 34.7 bits (78), Expect = 0.096
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 38 PVHGDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILE 97
P+ G I E G GKT++ L P+ GGLE ++I T+ F RL ++
Sbjct: 98 PLDG-ITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMA 156
Query: 98 H----RLSQSSEEIIKYCLG-RFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLS 152
R E + K G + F+ + + LL + + S L+++DS++
Sbjct: 157 QQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVA 216
Query: 153 A 153
A
Sbjct: 217 A 217
>gi|4885659 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 34.7 bits (78), Expect = 0.096
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 38 PVHGDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILE 97
P+ G I E G GKT++ L P+ GGLE ++I T+ F RL ++
Sbjct: 98 PLDG-ITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMA 156
Query: 98 H----RLSQSSEEIIKYCLG-RFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLS 152
R E + K G + F+ + + LL + + S L+++DS++
Sbjct: 157 QQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVA 216
Query: 153 A 153
A
Sbjct: 217 A 217
>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
Length = 348
Score = 33.1 bits (74), Expect = 0.28
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 41 GDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 100
G++ E G G+GKT++ C+ GL+ VL++D++ RL+ +L+ +
Sbjct: 120 GEVTEIVGGPGSGKTQVCL-----CMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKT 174
Query: 101 SQSSEEIIKYCLGRFFLVYCSSSTHLLLTLYSL-----ESMFCSHPSLCLLILDSLSA 153
E+ L R +V+ +L L L + + S ++ ++++DS++A
Sbjct: 175 QDEEEQ--AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTA 230
>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
Length = 328
Score = 33.1 bits (74), Expect = 0.28
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 41 GDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 100
G++ E G G+GKT++ C+ GL+ VL++D++ RL+ +L+ +
Sbjct: 100 GEVTEIVGGPGSGKTQVCL-----CMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKT 154
Query: 101 SQSSEEIIKYCLGRFFLVYCSSSTHLLLTLYSL-----ESMFCSHPSLCLLILDSLSA 153
E+ L R +V+ +L L L + + S ++ ++++DS++A
Sbjct: 155 QDEEEQ--AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTA 210
>gi|191252801 WDFY family member 4 [Homo sapiens]
Length = 3184
Score = 33.1 bits (74), Expect = 0.28
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 98 HRLSQSSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESM--FCSHPSLCLLILDSLSAFY 155
H S+S EE+ +FL+ H T+ +L+ + F + PSL D L A
Sbjct: 1609 HLSSESKEEMFLKLGPDWFLLLLQGHLHASTTVLALKLLLYFLASPSLRTRFRDGLCAGS 1668
Query: 156 WIDRVNGGESV---NLQ-ESTLRKCSQCL---EKLVNDY 187
W++R G + NL+ +S L + S CL +++ND+
Sbjct: 1669 WVERSTEGVDIVMDNLKSQSPLPEQSPCLLPGFRVLNDF 1707
>gi|226371754 katanin p60 subunit A-like 2 [Homo sapiens]
Length = 466
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 29 PNLFADEDSPVHGDILEFHGPEGTGKTEM-----------LYHLTARCILPKSEGGLE-- 75
P LF SP G +L +GP GTGKT + ++++A I+ K G E
Sbjct: 205 PQLFTGILSPWKGLLL--YGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKL 262
Query: 76 VEVLFIDTDYHFDMLRLVTILEHRLSQ 102
V VLF YH + LE +SQ
Sbjct: 263 VRVLFELARYHAPSTIFLDELESVMSQ 289
>gi|224589077 hypothetical protein LOC285600 isoform 1 [Homo
sapiens]
Length = 1275
Score = 28.5 bits (62), Expect = 6.8
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 65 CILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSSEEIIKYCLGRFFLVYCSSST 124
C+L G LE E +F D D + + ++H + + EI K C G V ++T
Sbjct: 16 CLLNSFPGDLEFEQIFSDIDEKIE--QNAASIKHCIKEIQSEINKQCPG----VQLQTTT 69
Query: 125 HLL--LTLYSL---ESMFCSHPSL 143
LT Y+ ES F SH L
Sbjct: 70 DCFEWLTNYNYSTSESSFISHGDL 93
>gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]
Length = 242
Score = 28.5 bits (62), Expect = 6.8
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 122 SSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQCLE 181
++ H LY +M LLI+DS +A Y D GE ++ ++ L + + L
Sbjct: 99 NTDHQTQLLYQASAMMVES-RYALLIVDSATALYRTDYSGRGE-LSARQMHLARFLRMLL 156
Query: 182 KLVNDYRLVLFATTQTIMQ 200
+L +++ + + T Q + Q
Sbjct: 157 RLADEFGVAVVITNQVVAQ 175
>gi|27734815 hypothetical protein LOC285600 isoform 2 [Homo sapiens]
Length = 324
Score = 28.5 bits (62), Expect = 6.8
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 65 CILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSSEEIIKYCLGRFFLVYCSSST 124
C+L G LE E +F D D + + ++H + + EI K C G V ++T
Sbjct: 16 CLLNSFPGDLEFEQIFSDIDEKIE--QNAASIKHCIKEIQSEINKQCPG----VQLQTTT 69
Query: 125 HLL--LTLYSL---ESMFCSHPSL 143
LT Y+ ES F SH L
Sbjct: 70 DCFEWLTNYNYSTSESSFISHGDL 93
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,533,001
Number of Sequences: 37866
Number of extensions: 442074
Number of successful extensions: 1148
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1134
Number of HSP's gapped (non-prelim): 17
length of query: 280
length of database: 18,247,518
effective HSP length: 101
effective length of query: 179
effective length of database: 14,423,052
effective search space: 2581726308
effective search space used: 2581726308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.