Search of human proteins with 4885589

Search of human proteins with 4885589

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4885589 small inducible cytokine B11 precursor [Homo
sapiens]
         (94 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4885589 small inducible cytokine B11 precursor [Homo sapiens]      189   5e-49
gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]        65   2e-11
gi|149999382 small inducible cytokine B10 precursor [Homo sapiens]     61   2e-10
gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]             43   5e-05
gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]            43   6e-05
gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]             38   0.002
gi|4505981 pro-platelet basic protein precursor [Homo sapiens]         37   0.004
gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte chemota...    35   0.013
gi|10834978 interleukin 8 precursor [Homo sapiens]                     33   0.049
gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo sapi...    33   0.064
gi|20149565 small inducible cytokine B14 precursor [Homo sapiens]      33   0.064
gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-deri...    32   0.11 
gi|22538814 small inducible cytokine A5 precursor [Homo sapiens]       31   0.19 
gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac...    30   0.32 
gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-deri...    30   0.54 
gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-deri...    30   0.54 

>gi|4885589 small inducible cytokine B11 precursor [Homo sapiens]
          Length = 94

 Score =  189 bits (479), Expect = 5e-49
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI 60
          MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI
Sbjct: 1  MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI 60

Query: 61 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF 94
          EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
Sbjct: 61 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF 94


>gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
          Length = 125

 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 1  MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDK 59
          M   G+   L +IL   + VQG P+ ++GRC CI      + +  ++      PS +C+K
Sbjct: 1  MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK 60

Query: 60 IEVIITLKENKGQRCLNPKSKQARLIIKKVERK 92
          IE+I TLK N  Q CLNP S   + +IKK E++
Sbjct: 61 IEIIATLK-NGVQTCLNPDSADVKELIKKWEKQ 92


>gi|149999382 small inducible cytokine B10 precursor [Homo
          sapiens]
          Length = 98

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 29/92 (31%), Positives = 51/92 (55%)

Query: 1  MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI 60
          M+   + I   + L  + +QG P+ +  RC CI    + V    +EK  I+  S  C ++
Sbjct: 1  MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRV 60

Query: 61 EVIITLKENKGQRCLNPKSKQARLIIKKVERK 92
          E+I T+K+   +RCLNP+SK  + ++K V ++
Sbjct: 61 EIIATMKKKGEKRCLNPESKAIKNLLKAVSKE 92


>gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]
          Length = 107

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 8   IALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLK 67
           + L ++  +    G P+    RC C+   ++ + + +I+   +  P  +C + EVI TLK
Sbjct: 21  LLLLLVAASRRAAGAPLATELRCQCLQT-LQGIHLKNIQSVKVKSPGPHCAQTEVIATLK 79

Query: 68  ENKGQRCLNPKSKQARLIIKKV 89
            N  + CLNP S   + II+K+
Sbjct: 80  -NGQKACLNPASPMVKKIIEKM 100


>gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]
          Length = 107

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 8   IALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLK 67
           + L ++  +    G  +    RC C+   ++ + + +I+  ++  P  +C + EVI TLK
Sbjct: 21  LLLLLVAASRRAAGASVVTELRCQCLQT-LQGIHLKNIQSVNVRSPGPHCAQTEVIATLK 79

Query: 68  ENKGQRCLNPKSKQARLIIKKVERK 92
             K + CLNP S   + II+K+  K
Sbjct: 80  NGK-KACLNPASPMVQKIIEKILNK 103


>gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]
          Length = 107

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 29  RCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKK 88
           RC C+   ++ +   +I+  ++  P  +C + EVI TLK N  + CLNP S   + II+K
Sbjct: 42  RCQCLQT-LQGIHPKNIQSVNVKSPGPHCAQTEVIATLK-NGRKACLNPASPIVKKIIEK 99

Query: 89  V 89
           +
Sbjct: 100 M 100


>gi|4505981 pro-platelet basic protein precursor [Homo sapiens]
          Length = 128

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 29  RCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKK 88
           RC+CI      +   +I+   ++    +C+++EVI TLK+ + + CL+P + + + I++K
Sbjct: 62  RCMCIKT-TSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGR-KICLDPDAPRIKKIVQK 119


>gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
           chemotactic protein 2) [Homo sapiens]
          Length = 114

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 29  RCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKK 88
           RC C+   ++ V    I K  +      C K+EV+ +LK  K Q CL+P++   + +I+K
Sbjct: 48  RCTCLRVTLR-VNPKTIGKLQVFPAGPQCSKVEVVASLKNGK-QVCLDPEAPFLKKVIQK 105

Query: 89  V 89
           +
Sbjct: 106 I 106


>gi|10834978 interleukin 8 precursor [Homo sapiens]
          Length = 99

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 6  MAIALAVILCATVVQGFPM---FKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEV 62
          +A+  A ++ A + +G  +    K  RC CI    K      I++  ++    +C   E+
Sbjct: 7  VALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANTEI 66

Query: 63 IITLKENKGQRCLNPKSKQARLIIKK 88
          I+ L + + + CL+PK    + +++K
Sbjct: 67 IVKLSDGR-ELCLDPKENWVQRVVEK 91


>gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo
           sapiens]
          Length = 114

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 29  RCLCIGP--GVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLII 86
           RC+C+    GV    +++++  +I      C K+EV+ +LK  K + CL+P++   + +I
Sbjct: 48  RCVCLQTTQGVHPKMISNLQVFAI---GPQCSKVEVVASLKNGK-EICLDPEAPFLKKVI 103

Query: 87  KKV 89
           +K+
Sbjct: 104 QKI 106


>gi|20149565 small inducible cytokine B14 precursor [Homo sapiens]
          Length = 111

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 1  MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI 60
          +S++ +A AL ++L A            +C C   G K ++ +D++K  +     +C++ 
Sbjct: 11 VSMRLLAAALLLLLLALYTA---RVDGSKCKCSRKGPK-IRYSDVKKLEMKPKYPHCEEK 66

Query: 61 EVIITLK---ENKGQ-RCLNPKSKQARLIIK 87
           VIIT K     +GQ  CL+PK +  +  IK
Sbjct: 67 MVIITTKSVSRYRGQEHCLHPKLQSTKRFIK 97


>gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal
          cell-derived factor 1) isoform beta [Homo sapiens]
          Length = 93

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 1  MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI 60
          M+ K + + + V+    +  G P+    RC C        + A+++   I+  + NC  +
Sbjct: 1  MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVAR-ANVKHLKILN-TPNC-AL 57

Query: 61 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF 94
          +++  LK N  Q C++PK K  +  ++K   K F
Sbjct: 58 QIVARLKNNNRQVCIDPKLKWIQEYLEKALNKRF 91


>gi|22538814 small inducible cytokine A5 precursor [Homo sapiens]
          Length = 91

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 3  VKGMAIALAVILCATVV----QGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCD 58
          +K  A ALAVIL AT +       P        C     + +  A I++    Y S  C 
Sbjct: 1  MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKE--YFYTSGKCS 58

Query: 59 KIEVIITLKENKGQRCLNPKSKQARLIIKKVE 90
             V+   ++N+ Q C NP+ K  R  I  +E
Sbjct: 59 NPAVVFVTRKNR-QVCANPEKKWVREYINSLE 89


>gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell
          chemoattractant) [Homo sapiens]
          Length = 109

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 14/65 (21%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 29 RCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKK 88
          RC C+      +    I++  I+   N C + E+I+  K+NK   C++P+++  + +++ 
Sbjct: 32 RCRCVQESSVFIPRRFIDRIQILPRGNGCPRKEIIV-WKKNKSIVCVDPQAEWIQRMMEV 90

Query: 89 VERKN 93
          + +++
Sbjct: 91 LRKRS 95


>gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal
          cell-derived factor 1) isoform gamma [Homo sapiens]
          Length = 119

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 1  MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI 60
          M+ K + + + V+    +  G P+    RC C        + A+++   I+  + NC  +
Sbjct: 1  MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVAR-ANVKHLKILN-TPNC-AL 57

Query: 61 EVIITLKENKGQRCLNPKSKQARLIIKKVERK 92
          +++  LK N  Q C++PK K  +  ++K   K
Sbjct: 58 QIVARLKNNNRQVCIDPKLKWIQEYLEKALNK 89


>gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal
          cell-derived factor 1) isoform alpha [Homo sapiens]
          Length = 89

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 1  MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI 60
          M+ K + + + V+    +  G P+    RC C        + A+++   I+  + NC  +
Sbjct: 1  MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVAR-ANVKHLKILN-TPNC-AL 57

Query: 61 EVIITLKENKGQRCLNPKSKQARLIIKKVERK 92
          +++  LK N  Q C++PK K  +  ++K   K
Sbjct: 58 QIVARLKNNNRQVCIDPKLKWIQEYLEKALNK 89


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,143,325
Number of Sequences: 37866
Number of extensions: 105392
Number of successful extensions: 318
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 16
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.