BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4885393 epsilon globin [Homo sapiens] (147 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4885393 epsilon globin [Homo sapiens] 298 8e-82 gi|6715607 G-gamma globin [Homo sapiens] 249 8e-67 gi|28302131 A-gamma globin [Homo sapiens] 248 1e-66 gi|4504349 beta globin [Homo sapiens] 238 1e-63 gi|4504351 delta globin [Homo sapiens] 232 1e-61 gi|4885397 hemoglobin, zeta [Homo sapiens] 107 4e-24 gi|4504347 alpha 1 globin [Homo sapiens] 100 6e-22 gi|4504345 alpha 2 globin [Homo sapiens] 100 6e-22 gi|51510893 hemoglobin mu chain [Homo sapiens] 100 6e-22 gi|4885395 theta 1 globin [Homo sapiens] 94 5e-20 gi|19549331 cytoglobin [Homo sapiens] 76 9e-15 gi|44955888 myoglobin [Homo sapiens] 52 2e-07 gi|44955885 myoglobin [Homo sapiens] 52 2e-07 gi|4885477 myoglobin [Homo sapiens] 52 2e-07 gi|10864065 neuroglobin [Homo sapiens] 45 3e-05 gi|163644316 hypothetical protein LOC23255 [Homo sapiens] 28 2.1 gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo sap... 28 2.1 gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo sap... 28 2.1 gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens] 28 3.6 gi|50659093 mannosidase, alpha, class 2B, member 2 [Homo sapiens] 28 3.6 >gi|4885393 epsilon globin [Homo sapiens] Length = 147 Score = 298 bits (764), Expect = 8e-82 Identities = 147/147 (100%), Positives = 147/147 (100%) Query: 1 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK Sbjct: 1 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60 Query: 61 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG Sbjct: 61 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120 Query: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147 KEFTPEVQAAWQKLVSAVAIALAHKYH Sbjct: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147 >gi|6715607 G-gamma globin [Homo sapiens] Length = 147 Score = 249 bits (635), Expect = 8e-67 Identities = 117/147 (79%), Positives = 133/147 (90%) Query: 1 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60 M HFT E+KA +TSLW K+NVE+AGGE LGRLLVVYPWTQRFFDSFGNLSS SAI+GNPK Sbjct: 1 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60 Query: 61 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120 VKAHGKKVLTS GDAIK++D+LK FA+LSELHCDKLHVDPENFKLLGNV+V +LA HFG Sbjct: 61 VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120 Query: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147 KEFTPEVQA+WQK+V+ VA AL+ +YH Sbjct: 121 KEFTPEVQASWQKMVTGVASALSSRYH 147 >gi|28302131 A-gamma globin [Homo sapiens] Length = 147 Score = 248 bits (634), Expect = 1e-66 Identities = 117/147 (79%), Positives = 133/147 (90%) Query: 1 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60 M HFT E+KA +TSLW K+NVE+AGGE LGRLLVVYPWTQRFFDSFGNLSS SAI+GNPK Sbjct: 1 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60 Query: 61 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120 VKAHGKKVLTS GDA K++D+LK FA+LSELHCDKLHVDPENFKLLGNV+V +LA HFG Sbjct: 61 VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120 Query: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147 KEFTPEVQA+WQK+V+AVA AL+ +YH Sbjct: 121 KEFTPEVQASWQKMVTAVASALSSRYH 147 >gi|4504349 beta globin [Homo sapiens] Length = 147 Score = 238 bits (607), Expect = 1e-63 Identities = 111/147 (75%), Positives = 130/147 (88%) Query: 1 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60 MVH T EEK+AVT+LW K+NV+E GGEALGRLLVVYPWTQRFF+SFG+LS+P A++GNPK Sbjct: 1 MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK 60 Query: 61 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120 VKAHGKKVL +F D + ++DNLK FA LSELHCDKLHVDPENF+LLGNV+V +LA HFG Sbjct: 61 VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG 120 Query: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147 KEFTP VQAA+QK+V+ VA ALAHKYH Sbjct: 121 KEFTPPVQAAYQKVVAGVANALAHKYH 147 >gi|4504351 delta globin [Homo sapiens] Length = 147 Score = 232 bits (591), Expect = 1e-61 Identities = 107/147 (72%), Positives = 129/147 (87%) Query: 1 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60 MVH T EEK AV +LW K+NV+ GGEALGRLLVVYPWTQRFF+SFG+LSSP A++GNPK Sbjct: 1 MVHLTPEEKTAVNALWGKVNVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPK 60 Query: 61 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120 VKAHGKKVL +F D + ++DNLK F++LSELHCDKLHVDPENF+LLGNV+V +LA +FG Sbjct: 61 VKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFG 120 Query: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147 KEFTP++QAA+QK+V+ VA ALAHKYH Sbjct: 121 KEFTPQMQAAYQKVVAGVANALAHKYH 147 >gi|4885397 hemoglobin, zeta [Homo sapiens] Length = 142 Score = 107 bits (267), Expect = 4e-24 Identities = 56/144 (38%), Positives = 86/144 (59%), Gaps = 8/144 (5%) Query: 5 TAEEKAAVTSLWSKMNVEE--AGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVK 62 T E+ + S+W+K++ + G E L RL + +P T+ +F F G+ +++ Sbjct: 4 TKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSAQLR 57 Query: 63 AHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKE 122 AHG KV+ + GDA+K++D++ A +KLSELH L VDP NFKLL + +++ LA F + Sbjct: 58 AHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPAD 117 Query: 123 FTPEVQAAWQKLVSAVAIALAHKY 146 FT E AAW K +S V+ L KY Sbjct: 118 FTAEAHAAWDKFLSVVSSVLTEKY 141 >gi|4504347 alpha 1 globin [Homo sapiens] Length = 142 Score = 100 bits (248), Expect = 6e-22 Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 8/141 (5%) Query: 8 EKAAVTSLWSKMNVE--EAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHG 65 +K V + W K+ E G EAL R+ + +P T+ +F F +LS SA +VK HG Sbjct: 7 DKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA-----QVKGHG 60 Query: 66 KKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTP 125 KKV + +A+ ++D++ A + LS+LH KL VDP NFKLL + +++ LA H EFTP Sbjct: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120 Query: 126 EVQAAWQKLVSAVAIALAHKY 146 V A+ K +++V+ L KY Sbjct: 121 AVHASLDKFLASVSTVLTSKY 141 >gi|4504345 alpha 2 globin [Homo sapiens] Length = 142 Score = 100 bits (248), Expect = 6e-22 Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 8/141 (5%) Query: 8 EKAAVTSLWSKMNVE--EAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHG 65 +K V + W K+ E G EAL R+ + +P T+ +F F +LS SA +VK HG Sbjct: 7 DKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA-----QVKGHG 60 Query: 66 KKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTP 125 KKV + +A+ ++D++ A + LS+LH KL VDP NFKLL + +++ LA H EFTP Sbjct: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120 Query: 126 EVQAAWQKLVSAVAIALAHKY 146 V A+ K +++V+ L KY Sbjct: 121 AVHASLDKFLASVSTVLTSKY 141 >gi|51510893 hemoglobin mu chain [Homo sapiens] Length = 141 Score = 100 bits (248), Expect = 6e-22 Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 8/144 (5%) Query: 5 TAEEKAAVTSLWSKMNVEEA--GGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVK 62 +A+E+A + +W + EA G E L RL VYP T+ +F + +L Sbjct: 3 SAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLL------ 56 Query: 63 AHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKE 122 +HG+++L + G A++++DNL+ A + L++LH L VDP NF LL ++LA+H E Sbjct: 57 SHGQRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDE 116 Query: 123 FTPEVQAAWQKLVSAVAIALAHKY 146 FT ++QAAW K ++ VA+ L KY Sbjct: 117 FTVQMQAAWDKFLTGVAVVLTEKY 140 >gi|4885395 theta 1 globin [Homo sapiens] Length = 142 Score = 93.6 bits (231), Expect = 5e-20 Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 8/144 (5%) Query: 5 TAEEKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVK 62 +AE++A V +LW K+ NV EAL R + +P T+ +F SP G+ +V+ Sbjct: 4 SAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLD--LSP----GSSQVR 57 Query: 63 AHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKE 122 AHG+KV + A++ +D+L A + LS LH +L VDP +F+LLG+ +++ LA H+ + Sbjct: 58 AHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGD 117 Query: 123 FTPEVQAAWQKLVSAVAIALAHKY 146 F+P +QA+ K +S V AL +Y Sbjct: 118 FSPALQASLDKFLSHVISALVSEY 141 >gi|19549331 cytoglobin [Homo sapiens] Length = 190 Score = 76.3 bits (186), Expect = 9e-15 Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 8 EKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHG 65 E+ AV ++W+++ N E+ G L R V +P +++F F ++ P + +P+++ H Sbjct: 23 ERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHA 82 Query: 66 KKVLTSFGDAIKNM---DNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKE 122 +V+ + ++N+ D + A + + H K V+P FK+L V++ ++A F + Sbjct: 83 CRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASD 142 Query: 123 FTPEVQAAWQKL 134 F PE Q AW KL Sbjct: 143 FPPETQRAWAKL 154 >gi|44955888 myoglobin [Homo sapiens] Length = 154 Score = 52.0 bits (123), Expect = 2e-07 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%) Query: 12 VTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVL 69 V ++W K+ ++ G E L RL +P T FD F +L S + + +K HG VL Sbjct: 11 VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70 Query: 70 TSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQA 129 T+ G +K + + L++ H K + + + + ++ +L + +F + Q Sbjct: 71 TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130 Query: 130 AWQKLVSAVAIALAHKY 146 A K + +A Y Sbjct: 131 AMNKALELFRKDMASNY 147 >gi|44955885 myoglobin [Homo sapiens] Length = 154 Score = 52.0 bits (123), Expect = 2e-07 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%) Query: 12 VTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVL 69 V ++W K+ ++ G E L RL +P T FD F +L S + + +K HG VL Sbjct: 11 VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70 Query: 70 TSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQA 129 T+ G +K + + L++ H K + + + + ++ +L + +F + Q Sbjct: 71 TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130 Query: 130 AWQKLVSAVAIALAHKY 146 A K + +A Y Sbjct: 131 AMNKALELFRKDMASNY 147 >gi|4885477 myoglobin [Homo sapiens] Length = 154 Score = 52.0 bits (123), Expect = 2e-07 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%) Query: 12 VTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVL 69 V ++W K+ ++ G E L RL +P T FD F +L S + + +K HG VL Sbjct: 11 VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70 Query: 70 TSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQA 129 T+ G +K + + L++ H K + + + + ++ +L + +F + Q Sbjct: 71 TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130 Query: 130 AWQKLVSAVAIALAHKY 146 A K + +A Y Sbjct: 131 AMNKALELFRKDMASNY 147 >gi|10864065 neuroglobin [Homo sapiens] Length = 151 Score = 44.7 bits (104), Expect = 3e-05 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 23 EAGGEALGRLLVVYPWTQRFFD-SFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDN 81 E G RL + P F + SSP L +P+ H +KV+ A+ N+++ Sbjct: 22 EHGTVLFARLFALEPDLLPLFQYNCRQFSSPEDCLSSPEFLDHIRKVMLVIDAAVTNVED 81 Query: 82 LKPA---FAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAV 138 L A L H + V +F +G ++ +L G FTP +AAW +L AV Sbjct: 82 LSSLEEYLASLGRKH-RAVGVKLSSFSTVGESLLYMLEKCLGPAFTPATRAAWSQLYGAV 140 Query: 139 AIALA 143 A++ Sbjct: 141 VQAMS 145 >gi|163644316 hypothetical protein LOC23255 [Homo sapiens] Length = 1586 Score = 28.5 bits (62), Expect = 2.1 Identities = 16/41 (39%), Positives = 21/41 (51%) Query: 80 DNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120 + LK A ++SEL L + EN LL N+ LA H G Sbjct: 336 EELKSARLQISELSGKVLKLQHENHALLSNIQRCDLAAHLG 376 >gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo sapiens] Length = 890 Score = 28.5 bits (62), Expect = 2.1 Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 83 KPAFAKLSELHCDKLHVDPEN 103 KP FAK+ C K+HV P N Sbjct: 732 KPQFAKMPSAMCSKIHVAPAN 752 >gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo sapiens] Length = 1101 Score = 28.5 bits (62), Expect = 2.1 Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 83 KPAFAKLSELHCDKLHVDPEN 103 KP FAK+ C K+HV P N Sbjct: 943 KPQFAKMPSAMCSKIHVAPAN 963 >gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens] Length = 2527 Score = 27.7 bits (60), Expect = 3.6 Identities = 18/69 (26%), Positives = 35/69 (50%) Query: 49 LSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLG 108 L++ + +GNP ++ G KV++S ++ L A S LH +++ D + + LG Sbjct: 547 LAALNRFIGNPGIQKCGLKVISSIVHFPDALEMLSLEGAMDSVLHTLQMYPDDQEIQCLG 606 Query: 109 NVMVIILAT 117 ++ L T Sbjct: 607 LSLIGYLIT 615 >gi|50659093 mannosidase, alpha, class 2B, member 2 [Homo sapiens] Length = 1009 Score = 27.7 bits (60), Expect = 3.6 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Query: 5 TAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSF--GNLSSPSAILGNPKVK 62 T +A + +L S + VEE L +++ W+ R G+ +SPS G P + Sbjct: 934 TVNLEAVLQALGSVVAVEERSLTGTWDLSMLHRWSWRTGPGRHRGDTTSPSRPPGGPIIT 993 Query: 63 AHGKKVLTSF 72 H K++ T F Sbjct: 994 VHPKEIRTFF 1003 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,353,685 Number of Sequences: 37866 Number of extensions: 200748 Number of successful extensions: 414 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 392 Number of HSP's gapped (non-prelim): 20 length of query: 147 length of database: 18,247,518 effective HSP length: 93 effective length of query: 54 effective length of database: 14,725,980 effective search space: 795202920 effective search space used: 795202920 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.