Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 4885393

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4885393 epsilon globin [Homo sapiens]
         (147 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4885393 epsilon globin [Homo sapiens]                              298   8e-82
gi|6715607 G-gamma globin [Homo sapiens]                              249   8e-67
gi|28302131 A-gamma globin [Homo sapiens]                             248   1e-66
gi|4504349 beta globin [Homo sapiens]                                 238   1e-63
gi|4504351 delta globin [Homo sapiens]                                232   1e-61
gi|4885397 hemoglobin, zeta [Homo sapiens]                            107   4e-24
gi|4504347 alpha 1 globin [Homo sapiens]                              100   6e-22
gi|4504345 alpha 2 globin [Homo sapiens]                              100   6e-22
gi|51510893 hemoglobin mu chain [Homo sapiens]                        100   6e-22
gi|4885395 theta 1 globin [Homo sapiens]                               94   5e-20
gi|19549331 cytoglobin [Homo sapiens]                                  76   9e-15
gi|44955888 myoglobin [Homo sapiens]                                   52   2e-07
gi|44955885 myoglobin [Homo sapiens]                                   52   2e-07
gi|4885477 myoglobin [Homo sapiens]                                    52   2e-07
gi|10864065 neuroglobin [Homo sapiens]                                 45   3e-05
gi|163644316 hypothetical protein LOC23255 [Homo sapiens]              28   2.1  
gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo sap...    28   2.1  
gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo sap...    28   2.1  
gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens]               28   3.6  
gi|50659093 mannosidase, alpha, class 2B, member 2 [Homo sapiens]      28   3.6  

>gi|4885393 epsilon globin [Homo sapiens]
          Length = 147

 Score =  298 bits (764), Expect = 8e-82
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60
           MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK
Sbjct: 1   MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60

Query: 61  VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120
           VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG
Sbjct: 61  VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120

Query: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147
           KEFTPEVQAAWQKLVSAVAIALAHKYH
Sbjct: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147


>gi|6715607 G-gamma globin [Homo sapiens]
          Length = 147

 Score =  249 bits (635), Expect = 8e-67
 Identities = 117/147 (79%), Positives = 133/147 (90%)

Query: 1   MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60
           M HFT E+KA +TSLW K+NVE+AGGE LGRLLVVYPWTQRFFDSFGNLSS SAI+GNPK
Sbjct: 1   MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60

Query: 61  VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120
           VKAHGKKVLTS GDAIK++D+LK  FA+LSELHCDKLHVDPENFKLLGNV+V +LA HFG
Sbjct: 61  VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120

Query: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147
           KEFTPEVQA+WQK+V+ VA AL+ +YH
Sbjct: 121 KEFTPEVQASWQKMVTGVASALSSRYH 147


>gi|28302131 A-gamma globin [Homo sapiens]
          Length = 147

 Score =  248 bits (634), Expect = 1e-66
 Identities = 117/147 (79%), Positives = 133/147 (90%)

Query: 1   MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60
           M HFT E+KA +TSLW K+NVE+AGGE LGRLLVVYPWTQRFFDSFGNLSS SAI+GNPK
Sbjct: 1   MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60

Query: 61  VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120
           VKAHGKKVLTS GDA K++D+LK  FA+LSELHCDKLHVDPENFKLLGNV+V +LA HFG
Sbjct: 61  VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120

Query: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147
           KEFTPEVQA+WQK+V+AVA AL+ +YH
Sbjct: 121 KEFTPEVQASWQKMVTAVASALSSRYH 147


>gi|4504349 beta globin [Homo sapiens]
          Length = 147

 Score =  238 bits (607), Expect = 1e-63
 Identities = 111/147 (75%), Positives = 130/147 (88%)

Query: 1   MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60
           MVH T EEK+AVT+LW K+NV+E GGEALGRLLVVYPWTQRFF+SFG+LS+P A++GNPK
Sbjct: 1   MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK 60

Query: 61  VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120
           VKAHGKKVL +F D + ++DNLK  FA LSELHCDKLHVDPENF+LLGNV+V +LA HFG
Sbjct: 61  VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG 120

Query: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147
           KEFTP VQAA+QK+V+ VA ALAHKYH
Sbjct: 121 KEFTPPVQAAYQKVVAGVANALAHKYH 147


>gi|4504351 delta globin [Homo sapiens]
          Length = 147

 Score =  232 bits (591), Expect = 1e-61
 Identities = 107/147 (72%), Positives = 129/147 (87%)

Query: 1   MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60
           MVH T EEK AV +LW K+NV+  GGEALGRLLVVYPWTQRFF+SFG+LSSP A++GNPK
Sbjct: 1   MVHLTPEEKTAVNALWGKVNVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPK 60

Query: 61  VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120
           VKAHGKKVL +F D + ++DNLK  F++LSELHCDKLHVDPENF+LLGNV+V +LA +FG
Sbjct: 61  VKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFG 120

Query: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147
           KEFTP++QAA+QK+V+ VA ALAHKYH
Sbjct: 121 KEFTPQMQAAYQKVVAGVANALAHKYH 147


>gi|4885397 hemoglobin, zeta [Homo sapiens]
          Length = 142

 Score =  107 bits (267), Expect = 4e-24
 Identities = 56/144 (38%), Positives = 86/144 (59%), Gaps = 8/144 (5%)

Query: 5   TAEEKAAVTSLWSKMNVEE--AGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVK 62
           T  E+  + S+W+K++ +    G E L RL + +P T+ +F  F          G+ +++
Sbjct: 4   TKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSAQLR 57

Query: 63  AHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKE 122
           AHG KV+ + GDA+K++D++  A +KLSELH   L VDP NFKLL + +++ LA  F  +
Sbjct: 58  AHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPAD 117

Query: 123 FTPEVQAAWQKLVSAVAIALAHKY 146
           FT E  AAW K +S V+  L  KY
Sbjct: 118 FTAEAHAAWDKFLSVVSSVLTEKY 141


>gi|4504347 alpha 1 globin [Homo sapiens]
          Length = 142

 Score =  100 bits (248), Expect = 6e-22
 Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 8/141 (5%)

Query: 8   EKAAVTSLWSKMNVE--EAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHG 65
           +K  V + W K+     E G EAL R+ + +P T+ +F  F +LS  SA     +VK HG
Sbjct: 7   DKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA-----QVKGHG 60

Query: 66  KKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTP 125
           KKV  +  +A+ ++D++  A + LS+LH  KL VDP NFKLL + +++ LA H   EFTP
Sbjct: 61  KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120

Query: 126 EVQAAWQKLVSAVAIALAHKY 146
            V A+  K +++V+  L  KY
Sbjct: 121 AVHASLDKFLASVSTVLTSKY 141


>gi|4504345 alpha 2 globin [Homo sapiens]
          Length = 142

 Score =  100 bits (248), Expect = 6e-22
 Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 8/141 (5%)

Query: 8   EKAAVTSLWSKMNVE--EAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHG 65
           +K  V + W K+     E G EAL R+ + +P T+ +F  F +LS  SA     +VK HG
Sbjct: 7   DKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA-----QVKGHG 60

Query: 66  KKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTP 125
           KKV  +  +A+ ++D++  A + LS+LH  KL VDP NFKLL + +++ LA H   EFTP
Sbjct: 61  KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120

Query: 126 EVQAAWQKLVSAVAIALAHKY 146
            V A+  K +++V+  L  KY
Sbjct: 121 AVHASLDKFLASVSTVLTSKY 141


>gi|51510893 hemoglobin mu chain [Homo sapiens]
          Length = 141

 Score =  100 bits (248), Expect = 6e-22
 Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 8/144 (5%)

Query: 5   TAEEKAAVTSLWSKMNVEEA--GGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVK 62
           +A+E+A +  +W  +   EA  G E L RL  VYP T+ +F         + +L      
Sbjct: 3   SAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLL------ 56

Query: 63  AHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKE 122
           +HG+++L + G A++++DNL+ A + L++LH   L VDP NF LL     ++LA+H   E
Sbjct: 57  SHGQRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDE 116

Query: 123 FTPEVQAAWQKLVSAVAIALAHKY 146
           FT ++QAAW K ++ VA+ L  KY
Sbjct: 117 FTVQMQAAWDKFLTGVAVVLTEKY 140


>gi|4885395 theta 1 globin [Homo sapiens]
          Length = 142

 Score = 93.6 bits (231), Expect = 5e-20
 Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 8/144 (5%)

Query: 5   TAEEKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVK 62
           +AE++A V +LW K+  NV     EAL R  + +P T+ +F       SP    G+ +V+
Sbjct: 4   SAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLD--LSP----GSSQVR 57

Query: 63  AHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKE 122
           AHG+KV  +   A++ +D+L  A + LS LH  +L VDP +F+LLG+ +++ LA H+  +
Sbjct: 58  AHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGD 117

Query: 123 FTPEVQAAWQKLVSAVAIALAHKY 146
           F+P +QA+  K +S V  AL  +Y
Sbjct: 118 FSPALQASLDKFLSHVISALVSEY 141


>gi|19549331 cytoglobin [Homo sapiens]
          Length = 190

 Score = 76.3 bits (186), Expect = 9e-15
 Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 8   EKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHG 65
           E+ AV ++W+++  N E+ G   L R  V +P  +++F  F ++  P  +  +P+++ H 
Sbjct: 23  ERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHA 82

Query: 66  KKVLTSFGDAIKNM---DNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKE 122
            +V+ +    ++N+   D +    A + + H  K  V+P  FK+L  V++ ++A  F  +
Sbjct: 83  CRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASD 142

Query: 123 FTPEVQAAWQKL 134
           F PE Q AW KL
Sbjct: 143 FPPETQRAWAKL 154


>gi|44955888 myoglobin [Homo sapiens]
          Length = 154

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 12  VTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVL 69
           V ++W K+  ++   G E L RL   +P T   FD F +L S   +  +  +K HG  VL
Sbjct: 11  VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70

Query: 70  TSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQA 129
           T+ G  +K   + +     L++ H  K  +  +  + +   ++ +L +    +F  + Q 
Sbjct: 71  TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130

Query: 130 AWQKLVSAVAIALAHKY 146
           A  K +      +A  Y
Sbjct: 131 AMNKALELFRKDMASNY 147


>gi|44955885 myoglobin [Homo sapiens]
          Length = 154

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 12  VTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVL 69
           V ++W K+  ++   G E L RL   +P T   FD F +L S   +  +  +K HG  VL
Sbjct: 11  VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70

Query: 70  TSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQA 129
           T+ G  +K   + +     L++ H  K  +  +  + +   ++ +L +    +F  + Q 
Sbjct: 71  TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130

Query: 130 AWQKLVSAVAIALAHKY 146
           A  K +      +A  Y
Sbjct: 131 AMNKALELFRKDMASNY 147


>gi|4885477 myoglobin [Homo sapiens]
          Length = 154

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 12  VTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVL 69
           V ++W K+  ++   G E L RL   +P T   FD F +L S   +  +  +K HG  VL
Sbjct: 11  VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70

Query: 70  TSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQA 129
           T+ G  +K   + +     L++ H  K  +  +  + +   ++ +L +    +F  + Q 
Sbjct: 71  TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130

Query: 130 AWQKLVSAVAIALAHKY 146
           A  K +      +A  Y
Sbjct: 131 AMNKALELFRKDMASNY 147


>gi|10864065 neuroglobin [Homo sapiens]
          Length = 151

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 23  EAGGEALGRLLVVYPWTQRFFD-SFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDN 81
           E G     RL  + P     F  +    SSP   L +P+   H +KV+     A+ N+++
Sbjct: 22  EHGTVLFARLFALEPDLLPLFQYNCRQFSSPEDCLSSPEFLDHIRKVMLVIDAAVTNVED 81

Query: 82  LKPA---FAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAV 138
           L       A L   H   + V   +F  +G  ++ +L    G  FTP  +AAW +L  AV
Sbjct: 82  LSSLEEYLASLGRKH-RAVGVKLSSFSTVGESLLYMLEKCLGPAFTPATRAAWSQLYGAV 140

Query: 139 AIALA 143
             A++
Sbjct: 141 VQAMS 145


>gi|163644316 hypothetical protein LOC23255 [Homo sapiens]
          Length = 1586

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 80  DNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120
           + LK A  ++SEL    L +  EN  LL N+    LA H G
Sbjct: 336 EELKSARLQISELSGKVLKLQHENHALLSNIQRCDLAAHLG 376


>gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo
           sapiens]
          Length = 890

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 83  KPAFAKLSELHCDKLHVDPEN 103
           KP FAK+    C K+HV P N
Sbjct: 732 KPQFAKMPSAMCSKIHVAPAN 752


>gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo
           sapiens]
          Length = 1101

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 83  KPAFAKLSELHCDKLHVDPEN 103
           KP FAK+    C K+HV P N
Sbjct: 943 KPQFAKMPSAMCSKIHVAPAN 963


>gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens]
          Length = 2527

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 18/69 (26%), Positives = 35/69 (50%)

Query: 49  LSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLG 108
           L++ +  +GNP ++  G KV++S       ++ L    A  S LH  +++ D +  + LG
Sbjct: 547 LAALNRFIGNPGIQKCGLKVISSIVHFPDALEMLSLEGAMDSVLHTLQMYPDDQEIQCLG 606

Query: 109 NVMVIILAT 117
             ++  L T
Sbjct: 607 LSLIGYLIT 615


>gi|50659093 mannosidase, alpha, class 2B, member 2 [Homo sapiens]
          Length = 1009

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 5    TAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSF--GNLSSPSAILGNPKVK 62
            T   +A + +L S + VEE        L +++ W+ R       G+ +SPS   G P + 
Sbjct: 934  TVNLEAVLQALGSVVAVEERSLTGTWDLSMLHRWSWRTGPGRHRGDTTSPSRPPGGPIIT 993

Query: 63   AHGKKVLTSF 72
             H K++ T F
Sbjct: 994  VHPKEIRTFF 1003


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,353,685
Number of Sequences: 37866
Number of extensions: 200748
Number of successful extensions: 414
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 20
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press