Guide to the Human Genome
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Name: GTF2H1 Sequence: fasta or formatted (548aa) NCBI GI: 4885365
Description:

general transcription factor IIH, polypeptide 1, 62kDa

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt mRNA [548aa] general transcription factor IIH, polypeptide 1, 62kDa
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         42           2
 C cysteine            1.1          6           1
 D aspartate           4.7         26           1
 E glutamate           6.9         38           2
 F phenylalanine       3.8         21           2
 G glycine             4.0         22           2
 H histidine           2.6         14           2
 I isoleucine          4.9         27           2
 K lysine              8.6         47           2
 L leucine             9.5         52           2
 M methionine          2.7         15           1
 N asparagine          5.7         31           2
 P proline             3.6         20           1
 Q glutamine           6.2         34           2
 R arginine            4.4         24           2
 S serine              8.8         48           3
 T threonine           5.5         30           2
 V valine              5.5         30           2
 W tryptophan          0.9          5           1
 Y tyrosine            2.9         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   general transcription factor IIH, polypeptide 1, 62kD... 
GTF2H1                1.000   general transcription factor IIH, polypeptide 1, 62...
CARD6                 0.011   caspase recruitment domain family, member 6 
NANOG                 0.010   Nanog homeobox 
LOC100293888          0.010   PREDICTED: similar to Nanog homeobox isoform 2 [Hom...
LOC100293888          0.010   PREDICTED: similar to Nanog homeobox isoform 1 [Hom...
SEPT10                0.008   septin 10 isoform 2 
SEPT10                0.008   septin 10 isoform 1 
HHEX                  0.008   hematopoietically expressed homeobox 
DIP2B                 0.008   DIP2 disco-interacting protein 2 homolog B 
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isofo...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isofo...
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
MORF4L2               0.007   mortality factor 4 like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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