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Search of human proteins with 48526509
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48526509 translocase of inner mitochondrial membrane 50
homolog [Homo sapiens]
(456 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48526509 translocase of inner mitochondrial membrane 50 homol... 929 0.0
gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens] 83 6e-16
gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens] 80 4e-15
gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II, pol... 80 4e-15
gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II, pol... 80 4e-15
gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II, po... 76 6e-14
gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo sa... 75 1e-13
gi|219555649 dullard homolog [Homo sapiens] 63 6e-10
gi|31542547 dullard homolog [Homo sapiens] 63 6e-10
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens] 38 0.017
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 38 0.022
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.022
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 38 0.022
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 38 0.022
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 38 0.022
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 38 0.022
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 38 0.022
gi|239747122 PREDICTED: hypothetical protein XP_002343916 [Homo ... 35 0.14
gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo ... 35 0.14
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 35 0.14
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 35 0.18
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 35 0.18
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 35 0.18
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 35 0.18
gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens] 35 0.18
gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens] 35 0.18
gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens] 35 0.18
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 34 0.24
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 34 0.24
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 34 0.24
>gi|48526509 translocase of inner mitochondrial membrane 50 homolog
[Homo sapiens]
Length = 456
Score = 929 bits (2402), Expect = 0.0
Identities = 456/456 (100%), Positives = 456/456 (100%)
Query: 1 MASALSLGNKCDPFLRCVLCRGGGALQGPRGRGPDDFESQLSPPGSARRLVRSKRACGNP 60
MASALSLGNKCDPFLRCVLCRGGGALQGPRGRGPDDFESQLSPPGSARRLVRSKRACGNP
Sbjct: 1 MASALSLGNKCDPFLRCVLCRGGGALQGPRGRGPDDFESQLSPPGSARRLVRSKRACGNP 60
Query: 61 PDAFGLSRASVHPPLPRVSIGCSSGPGRAKRERVGGAAWRQRKMAASAAVFSRLRSGLRL 120
PDAFGLSRASVHPPLPRVSIGCSSGPGRAKRERVGGAAWRQRKMAASAAVFSRLRSGLRL
Sbjct: 61 PDAFGLSRASVHPPLPRVSIGCSSGPGRAKRERVGGAAWRQRKMAASAAVFSRLRSGLRL 120
Query: 121 GSRGLCTRLATPPRRAPDQAAEIGSRGSTKAQGPQQQPGSEGPSYAKKVALWLAGLLGAG 180
GSRGLCTRLATPPRRAPDQAAEIGSRGSTKAQGPQQQPGSEGPSYAKKVALWLAGLLGAG
Sbjct: 121 GSRGLCTRLATPPRRAPDQAAEIGSRGSTKAQGPQQQPGSEGPSYAKKVALWLAGLLGAG 180
Query: 181 GTVSVVYIFGNNPVDENGAKIPDEFDNDPILVQQLRRTYKYFKDYRQMIIEPTSPCLLPD 240
GTVSVVYIFGNNPVDENGAKIPDEFDNDPILVQQLRRTYKYFKDYRQMIIEPTSPCLLPD
Sbjct: 181 GTVSVVYIFGNNPVDENGAKIPDEFDNDPILVQQLRRTYKYFKDYRQMIIEPTSPCLLPD 240
Query: 241 PLQEPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSET 300
PLQEPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSET
Sbjct: 241 PLQEPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSET 300
Query: 301 GMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQ 360
GMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQ
Sbjct: 301 GMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQ 360
Query: 361 PYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEDDPLAAFKQRQSR 420
PYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEDDPLAAFKQRQSR
Sbjct: 361 PYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEDDPLAAFKQRQSR 420
Query: 421 LEQEEQQRLAELSKSNKQNLFLGSLTSRLWPRSKQP 456
LEQEEQQRLAELSKSNKQNLFLGSLTSRLWPRSKQP
Sbjct: 421 LEQEEQQRLAELSKSNKQNLFLGSLTSRLWPRSKQP 456
>gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens]
Length = 265
Score = 82.8 bits (203), Expect = 6e-16
Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 34/212 (16%)
Query: 222 FKDYRQMIIEPTSPCLLPDPLQE---------PYYQPPYTL--------VLELTGVLLHP 264
F+DY P+SP +LP ++E Y P T+ V++L L+H
Sbjct: 50 FRDYNVEAPPPSSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 109
Query: 265 EWSLATGWRF---------------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLID 309
+ + F KRP ++ Q++ L+E V+FT+ A P+ D
Sbjct: 110 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 169
Query: 310 SVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRP 369
+D G RLFR++ + G++VKD+S L R+ ++V++VD ++ P N V ++
Sbjct: 170 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 229
Query: 370 WDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 401
W + D LLDL F + L+ +DV ++L
Sbjct: 230 WFDDMTDTELLDLIPFFE--GLSREDDVYSML 259
>gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens]
Length = 276
Score = 80.1 bits (196), Expect = 4e-15
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 21/195 (10%)
Query: 224 DYRQMIIEPTSPC--LLPDPLQEPYYQPPYTLVLELTGVLLHPEWSLATGWRF------- 274
D RQ+I P+ P LLP+ Y + +V++L L+H + + F
Sbjct: 80 DQRQVIPIPSPPAKYLLPEVTVLDYGKK--CVVIDLDETLVHSSFKPISNADFIVPVEID 137
Query: 275 --------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 326
KRP ++ Q++ L+E V+FT+ A P+ D +D G RLFR++
Sbjct: 138 GTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESC 197
Query: 327 RYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL 386
+ G++VKD+S L R+ ++V++VD ++ P N V ++ W + D LLDL F
Sbjct: 198 VFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFF 257
Query: 387 KTIALNGVEDVRTVL 401
+ L+ +DV ++L
Sbjct: 258 E--GLSREDDVYSML 270
>gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase 1 isoform 1 [Homo
sapiens]
Length = 261
Score = 80.1 bits (196), Expect = 4e-15
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 10/158 (6%)
Query: 244 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 303
+P + + +E+ GV+ H + L KRP ++ Q++ L+E V+FT+
Sbjct: 107 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 158
Query: 304 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 363
A P+ D +D G RLFR++ + G++VKD+S L RD RV+++D ++ P N
Sbjct: 159 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 218
Query: 364 GVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 401
V + W N D L DL F + L+ V+DV +VL
Sbjct: 219 AVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 254
>gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase 1 isoform 2 [Homo
sapiens]
Length = 260
Score = 80.1 bits (196), Expect = 4e-15
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 10/158 (6%)
Query: 244 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 303
+P + + +E+ GV+ H + L KRP ++ Q++ L+E V+FT+
Sbjct: 106 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 157
Query: 304 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 363
A P+ D +D G RLFR++ + G++VKD+S L RD RV+++D ++ P N
Sbjct: 158 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 217
Query: 364 GVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 401
V + W N D L DL F + L+ V+DV +VL
Sbjct: 218 AVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 253
>gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase like 2 [Homo sapiens]
Length = 466
Score = 76.3 bits (186), Expect = 6e-14
Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 20/178 (11%)
Query: 249 PPYTLVLELTGVLLH------PEWSLATGWRFKK---------RPGIETLFQQLAPLYEI 293
P ++LVL+L L+H + +L F+ RP ++++ +YEI
Sbjct: 286 PEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEI 345
Query: 294 VIFTSETGMTAFPLIDSVDPHG-FISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDC 352
++FT+ + A L++ +DP + +RLFR+ + G+++KD++ L RD ++ +++D
Sbjct: 346 ILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDN 405
Query: 353 KKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL-KTIALNGVEDVRT-VLEHYALED 408
+AF Q NG+ + W + +D LL L FL K + LN EDVR + + + L D
Sbjct: 406 SPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN--EDVRPHIRDRFRLHD 461
>gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo
sapiens]
Length = 271
Score = 75.1 bits (183), Expect = 1e-13
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 236 CLLPDPLQEPYYQPPYTLVLELTGVLLHPEWSLATGWRF---------------KKRPGI 280
CLLP+ +E Q +V++L L+H + F KRP +
Sbjct: 89 CLLPEVTEED--QGRICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTHQVYVLKRPYV 146
Query: 281 ETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCL 340
+ +++ L+E V+FT+ A P+ D +D G RLFR++ + G +VKD+S L
Sbjct: 147 DEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRL 206
Query: 341 NRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTV 400
RD + +++D ++ P N V ++ W + D LL+L + L+G EDV T
Sbjct: 207 GRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFE--ELSGAEDVYTS 264
Query: 401 L 401
L
Sbjct: 265 L 265
>gi|219555649 dullard homolog [Homo sapiens]
Length = 244
Score = 62.8 bits (151), Expect = 6e-10
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 276 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVD-PHGFISYRLFRDATRYMDGHHV 334
KRP ++ + ++ YE+V+FT+ + + D +D + R +R G ++
Sbjct: 110 KRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYI 169
Query: 335 KDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGV 394
KD+S ++ D + +V++D A+R P N + ++ W + D LL+L L AL
Sbjct: 170 KDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLD--ALRFT 227
Query: 395 EDVRTVL 401
DVR+VL
Sbjct: 228 ADVRSVL 234
>gi|31542547 dullard homolog [Homo sapiens]
Length = 244
Score = 62.8 bits (151), Expect = 6e-10
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 276 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVD-PHGFISYRLFRDATRYMDGHHV 334
KRP ++ + ++ YE+V+FT+ + + D +D + R +R G ++
Sbjct: 110 KRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYI 169
Query: 335 KDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGV 394
KD+S ++ D + +V++D A+R P N + ++ W + D LL+L L AL
Sbjct: 170 KDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLD--ALRFT 227
Query: 395 EDVRTVL 401
DVR+VL
Sbjct: 228 ADVRSVL 234
>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
Length = 2778
Score = 38.1 bits (87), Expect = 0.017
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 23/100 (23%)
Query: 136 APDQAAEIGS----RGSTKAQG--PQQQPGSEG-PSYAKKVALWLAGLLGAGGTVSVV-- 186
AP Q A+ RGS++ G P +QPGS G KK+ALW A L G GG + +
Sbjct: 1652 APSQGAKRDRMRNVRGSSRGLGQVPGEQPGSWGFREVRKKMALW-AALAGTGGFLEEISP 1710
Query: 187 -------------YIFGNNPVDENGAKIPDEFDNDPILVQ 213
+ G+ V G PDEF +D +L Q
Sbjct: 1711 HLKEPRPRLFHASALLGDTMVVLGGRSDPDEFSSDVLLYQ 1750
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 37.7 bits (86), Expect = 0.022
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 66 LSRASVHPPLPRVSIGCSSGPGRAKRERVGGAAWRQRKMAASAAVFSRLRSGLRLGSRGL 125
+S V PP P GC A+R G A+R +A +F + +GL RGL
Sbjct: 1 MSPEPVPPPPPPQCPGCDRAEPIAQRLEEGDEAFRAGDYEMAAELFRSMLAGLAQPDRGL 60
Query: 126 CTRLATPPRRAPDQAAEIGS-RGSTK 150
C RL RA +G+ RG+ +
Sbjct: 61 CLRLGDALARAGRLPEALGAFRGAAR 86
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.7 bits (86), Expect = 0.022
Identities = 45/145 (31%), Positives = 53/145 (36%), Gaps = 17/145 (11%)
Query: 22 GGGALQGPRGRGPDDFESQLSPPGSARRLVRSKRACGNP-PDAFGLSRASVHPPLPRVSI 80
G G G G P S P S VR K A P P A G P PR +
Sbjct: 316 GSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARG-----KESPSPRSAP 370
Query: 81 GCSSGPGRAKRERVGGAAWRQRKMAASAAVFSRLRSGLRLGSRGLCTRLATPPR---RAP 137
GRA GGA R+R+ S + R G R PPR R+
Sbjct: 371 SSQGRGGRA----AGGAGRRRRRRRRRRRSRSSASAPRRRGRR---RPRPAPPRGSSRSL 423
Query: 138 DQAAEIGSRGSTK-AQGPQQQPGSE 161
+A GS + A GP +PGSE
Sbjct: 424 SRARSSSDSGSGRGAPGPGPEPGSE 448
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 37.7 bits (86), Expect = 0.022
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 116 SGLRLGSRGLCTRLATPPRRAPDQ--AAEIGS-RGSTKAQGPQQQPGSEGPSYAKKVALW 172
SGLR G+ G+ PP++ ++ AA IGS RG + +GP Q P EG ++ +
Sbjct: 67 SGLRRGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTGKGPPQSPVFEGVYNNSRMLHF 126
Query: 173 LAGLLGAGGTVSV 185
L ++G+ V V
Sbjct: 127 LTAVVGSTCDVKV 139
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 37.7 bits (86), Expect = 0.022
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 116 SGLRLGSRGLCTRLATPPRRAPDQ--AAEIGS-RGSTKAQGPQQQPGSEGPSYAKKVALW 172
SGLR G+ G+ PP++ ++ AA IGS RG + +GP Q P EG ++ +
Sbjct: 67 SGLRRGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTGKGPPQSPVFEGVYNNSRMLHF 126
Query: 173 LAGLLGAGGTVSV 185
L ++G+ V V
Sbjct: 127 LTAVVGSTCDVKV 139
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 37.7 bits (86), Expect = 0.022
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 116 SGLRLGSRGLCTRLATPPRRAPDQ--AAEIGS-RGSTKAQGPQQQPGSEGPSYAKKVALW 172
SGLR G+ G+ PP++ ++ AA IGS RG + +GP Q P EG ++ +
Sbjct: 67 SGLRRGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTGKGPPQSPVFEGVYNNSRMLHF 126
Query: 173 LAGLLGAGGTVSV 185
L ++G+ V V
Sbjct: 127 LTAVVGSTCDVKV 139
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 37.7 bits (86), Expect = 0.022
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 116 SGLRLGSRGLCTRLATPPRRAPDQ--AAEIGS-RGSTKAQGPQQQPGSEGPSYAKKVALW 172
SGLR G+ G+ PP++ ++ AA IGS RG + +GP Q P EG ++ +
Sbjct: 67 SGLRRGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTGKGPPQSPVFEGVYNNSRMLHF 126
Query: 173 LAGLLGAGGTVSV 185
L ++G+ V V
Sbjct: 127 LTAVVGSTCDVKV 139
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 37.7 bits (86), Expect = 0.022
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 116 SGLRLGSRGLCTRLATPPRRAPDQ--AAEIGS-RGSTKAQGPQQQPGSEGPSYAKKVALW 172
SGLR G+ G+ PP++ ++ AA IGS RG + +GP Q P EG ++ +
Sbjct: 67 SGLRRGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTGKGPPQSPVFEGVYNNSRMLHF 126
Query: 173 LAGLLGAGGTVSV 185
L ++G+ V V
Sbjct: 127 LTAVVGSTCDVKV 139
>gi|239747122 PREDICTED: hypothetical protein XP_002343916 [Homo
sapiens]
Length = 598
Score = 35.0 bits (79), Expect = 0.14
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 65 GLSRASVHPPLPRVSIGCSSGPGRAKRERVGGAAWRQRKMAASAAVFSRLRSGLRLGSRG 124
G+S V PP P+ GC G A+R G A+RQ + +A +F + L RG
Sbjct: 48 GISTEPVPPP-PQCP-GCDCGEPIAQRLEEGDEAFRQSEYQKAAGLFRSTLARLAQPDRG 105
Query: 125 LCTRLATPPRRAPDQAAEIGS 145
C RL RA +G+
Sbjct: 106 QCLRLGNALARADRLPVALGA 126
>gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo
sapiens]
Length = 616
Score = 35.0 bits (79), Expect = 0.14
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 65 GLSRASVHPPLPRVSIGCSSGPGRAKRERVGGAAWRQRKMAASAAVFSRLRSGLRLGSRG 124
G+S V PP P+ GC G A+R G A+RQ + +A +F + L RG
Sbjct: 66 GISTEPVPPP-PQCP-GCDCGEPIAQRLEEGDEAFRQSEYQKAAGLFRSTLARLAQPDRG 123
Query: 125 LCTRLATPPRRAPDQAAEIGS 145
C RL RA +G+
Sbjct: 124 QCLRLGNALARADRLPVALGA 144
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 35.0 bits (79), Expect = 0.14
Identities = 43/155 (27%), Positives = 59/155 (38%), Gaps = 17/155 (10%)
Query: 20 CRGGGALQGPRGR-GPDDFESQLSPPGSARRLVRSKRACGNPPDAFGLSRASVHPPLPRV 78
C A QGP GR G + + PG + R P GL HP P+
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGQ--PGTRGFPGFPGPIGLDGKPGHPG-PKG 173
Query: 79 SIGCSSGPG-------RAKRERVGGAAWRQRKMAASAAVFSRLRSGLRLGSRGLCTRLAT 131
+G + PG + ++ + G R+ + AA+ S L+L RLA
Sbjct: 174 DMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKLLPLLNSVRLAP 233
Query: 132 PP--RRAPDQAAEIGSRGSTKAQGPQQQPGSEGPS 164
PP +R Q G + QGP PG GPS
Sbjct: 234 PPVIKRRTFQ----GEQSQASIQGPPGPPGPPGPS 264
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 34.7 bits (78), Expect = 0.18
Identities = 41/146 (28%), Positives = 50/146 (34%), Gaps = 32/146 (21%)
Query: 21 RGGGALQGPRG-RGPDDFESQLSPPGSARRLVRSKRACGNPPDAFGLSRAS--VHPPLPR 77
+G GP G GP + PG+ + R PP A G A+ V PP P
Sbjct: 835 KGDAGPPGPAGPAGPPGPIGNVGAPGA-----KGARGSAGPPGATGFPGAAGRVGPPGPS 889
Query: 78 VSIGCSSGPGRAKRERVGGAAWRQRKMAASAAVFSRLRSGLRLGSRGLCTRLATPPRRAP 137
+ G PG A +E GG R A R G G P
Sbjct: 890 GNAGPPGPPGPAGKE--GGKGPRGETGPAG-----------RPGEVG-----------PP 925
Query: 138 DQAAEIGSRGSTKAQGPQQQPGSEGP 163
G +GS A GP PG+ GP
Sbjct: 926 GPPGPAGEKGSPGADGPAGAPGTPGP 951
Score = 30.8 bits (68), Expect = 2.7
Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 25/154 (16%)
Query: 24 GALQGPRGRGPDDFESQLSPPGSARRLVRSKRACGNP--PDAFGLSRASVHPPLPRVSIG 81
GA P RGP + PPG K G P P + G + A P +G
Sbjct: 407 GAPGFPGARGPSGPQGPGGPPGP-------KGNSGEPGAPGSKGDTGAKGEPG----PVG 455
Query: 82 CSSGPGRAKRERVGGAAWRQRKMAASAAVFSRLRSGLR--------LGSRGLCTRLATP- 132
PG A E GA R G R G +G +P
Sbjct: 456 VQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPG 515
Query: 133 ---PRRAPDQAAEIGSRGSTKAQGPQQQPGSEGP 163
P+ +P +A G G A+G PGS GP
Sbjct: 516 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGP 549
Score = 29.6 bits (65), Expect = 5.9
Identities = 51/180 (28%), Positives = 63/180 (35%), Gaps = 30/180 (16%)
Query: 14 FLRCVLCRGGGALQGPRG-RGPDDFESQLSPPGSARRL-----------VRSKRACGNP- 60
F V +G QGPRG GP + PPG A +K A G P
Sbjct: 345 FPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPG 404
Query: 61 -------PDAFGLS--RASVHPPLPRVSIGCSSGPGRAKRERVGGAAWRQRKMAASAAVF 111
P A G S + PP P+ G S PG + GA +
Sbjct: 405 IAGAPGFPGARGPSGPQGPGGPPGPK---GNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG 461
Query: 112 SRLRSGLRLGSRGLC--TRLATPP--RRAPDQAAEIGSRGSTKAQGPQQQPGSEGPSYAK 167
G R G+RG T L PP R P G+ G +GP + GS GP+ K
Sbjct: 462 PAGEEGKR-GARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPK 520
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 34.7 bits (78), Expect = 0.18
Identities = 46/170 (27%), Positives = 62/170 (36%), Gaps = 30/170 (17%)
Query: 20 CRGGGALQGPRGR-------GPDDFESQLSPPGSARRLVRSKRAC-GNP--------PDA 63
C A QGP GR G ++ PG A + R G P P
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGP 176
Query: 64 FGLSRASVHPPLPRVSIGCSSGPG-------RAKRERVGGAAWRQRKMAASAAVFSRLRS 116
GL HP P+ +G + PG + ++ + G R+ + AA+ S
Sbjct: 177 IGLDGKPGHPG-PKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQII 235
Query: 117 GLRLGSRGLCTRLATPP--RRAPDQAAEIGSRGSTKAQGPQQQPGSEGPS 164
L+L RLA PP +R Q G + QGP PG GPS
Sbjct: 236 ALKLLPLLNSVRLAPPPVIKRRTFQ----GEQSQASIQGPPGPPGPPGPS 281
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 34.7 bits (78), Expect = 0.18
Identities = 46/170 (27%), Positives = 62/170 (36%), Gaps = 30/170 (17%)
Query: 20 CRGGGALQGPRGR-------GPDDFESQLSPPGSARRLVRSKRAC-GNP--------PDA 63
C A QGP GR G ++ PG A + R G P P
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGP 176
Query: 64 FGLSRASVHPPLPRVSIGCSSGPG-------RAKRERVGGAAWRQRKMAASAAVFSRLRS 116
GL HP P+ +G + PG + ++ + G R+ + AA+ S
Sbjct: 177 IGLDGKPGHPG-PKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQII 235
Query: 117 GLRLGSRGLCTRLATPP--RRAPDQAAEIGSRGSTKAQGPQQQPGSEGPS 164
L+L RLA PP +R Q G + QGP PG GPS
Sbjct: 236 ALKLLPLLNSVRLAPPPVIKRRTFQ----GEQSQASIQGPPGPPGPPGPS 281
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 34.7 bits (78), Expect = 0.18
Identities = 46/170 (27%), Positives = 62/170 (36%), Gaps = 30/170 (17%)
Query: 20 CRGGGALQGPRGR-------GPDDFESQLSPPGSARRLVRSKRAC-GNP--------PDA 63
C A QGP GR G ++ PG A + R G P P
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGP 176
Query: 64 FGLSRASVHPPLPRVSIGCSSGPG-------RAKRERVGGAAWRQRKMAASAAVFSRLRS 116
GL HP P+ +G + PG + ++ + G R+ + AA+ S
Sbjct: 177 IGLDGKPGHPG-PKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQII 235
Query: 117 GLRLGSRGLCTRLATPP--RRAPDQAAEIGSRGSTKAQGPQQQPGSEGPS 164
L+L RLA PP +R Q G + QGP PG GPS
Sbjct: 236 ALKLLPLLNSVRLAPPPVIKRRTFQ----GEQSQASIQGPPGPPGPPGPS 281
>gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens]
Length = 702
Score = 34.7 bits (78), Expect = 0.18
Identities = 46/170 (27%), Positives = 62/170 (36%), Gaps = 30/170 (17%)
Query: 20 CRGGGALQGPRGR-------GPDDFESQLSPPGSARRLVRSKRAC-GNP--------PDA 63
C A QGP GR G ++ PG A + R G P P
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGP 176
Query: 64 FGLSRASVHPPLPRVSIGCSSGPG-------RAKRERVGGAAWRQRKMAASAAVFSRLRS 116
GL HP P+ +G + PG + ++ + G R+ + AA+ S
Sbjct: 177 IGLDGKPGHPG-PKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQII 235
Query: 117 GLRLGSRGLCTRLATPP--RRAPDQAAEIGSRGSTKAQGPQQQPGSEGPS 164
L+L RLA PP +R Q G + QGP PG GPS
Sbjct: 236 ALKLLPLLNSVRLAPPPVIKRRTFQ----GEQSQASIQGPPGPPGPPGPS 281
>gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens]
Length = 717
Score = 34.7 bits (78), Expect = 0.18
Identities = 46/170 (27%), Positives = 62/170 (36%), Gaps = 30/170 (17%)
Query: 20 CRGGGALQGPRGR-------GPDDFESQLSPPGSARRLVRSKRAC-GNP--------PDA 63
C A QGP GR G ++ PG A + R G P P
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGP 176
Query: 64 FGLSRASVHPPLPRVSIGCSSGPG-------RAKRERVGGAAWRQRKMAASAAVFSRLRS 116
GL HP P+ +G + PG + ++ + G R+ + AA+ S
Sbjct: 177 IGLDGKPGHPG-PKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQII 235
Query: 117 GLRLGSRGLCTRLATPP--RRAPDQAAEIGSRGSTKAQGPQQQPGSEGPS 164
L+L RLA PP +R Q G + QGP PG GPS
Sbjct: 236 ALKLLPLLNSVRLAPPPVIKRRTFQ----GEQSQASIQGPPGPPGPPGPS 281
>gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens]
Length = 705
Score = 34.7 bits (78), Expect = 0.18
Identities = 46/170 (27%), Positives = 62/170 (36%), Gaps = 30/170 (17%)
Query: 20 CRGGGALQGPRGR-------GPDDFESQLSPPGSARRLVRSKRAC-GNP--------PDA 63
C A QGP GR G ++ PG A + R G P P
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGP 176
Query: 64 FGLSRASVHPPLPRVSIGCSSGPG-------RAKRERVGGAAWRQRKMAASAAVFSRLRS 116
GL HP P+ +G + PG + ++ + G R+ + AA+ S
Sbjct: 177 IGLDGKPGHPG-PKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQII 235
Query: 117 GLRLGSRGLCTRLATPP--RRAPDQAAEIGSRGSTKAQGPQQQPGSEGPS 164
L+L RLA PP +R Q G + QGP PG GPS
Sbjct: 236 ALKLLPLLNSVRLAPPPVIKRRTFQ----GEQSQASIQGPPGPPGPPGPS 281
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 34.3 bits (77), Expect = 0.24
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 28 GPRGRGPDDFESQLSPPGSARRLVRSKRACGNPPDAFGLSRASVHPPLPRVSIGCSSGPG 87
GP RG PP + L R A + P A + H PL R S + GPG
Sbjct: 138 GPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCPPHAPLARPS-AVAEGPG 196
Query: 88 RAKRERVGGAAWRQRKMAASA 108
A + G +WR+ A+SA
Sbjct: 197 LA---QASGGSWRRCPGASSA 214
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 34.3 bits (77), Expect = 0.24
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 28 GPRGRGPDDFESQLSPPGSARRLVRSKRACGNPPDAFGLSRASVHPPLPRVSIGCSSGPG 87
GP RG PP + L R A + P A + H PL R S + GPG
Sbjct: 138 GPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCPPHAPLARPS-AVAEGPG 196
Query: 88 RAKRERVGGAAWRQRKMAASA 108
A + G +WR+ A+SA
Sbjct: 197 LA---QASGGSWRRCPGASSA 214
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 34.3 bits (77), Expect = 0.24
Identities = 45/163 (27%), Positives = 59/163 (36%), Gaps = 28/163 (17%)
Query: 20 CRGGGALQGPRGR-----GPDDFESQL----SPPGSARRLVRSKRACGNPPDAFGLSRAS 70
C A QGP GR P D + PPG R P GL
Sbjct: 117 CNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQP-----GTRGFPGFPGPIGLDGKP 171
Query: 71 VHPPLPRVSIGCSSGPG-------RAKRERVGGAAWRQRKMAASAAVFSRLRSGLRLGSR 123
HP P+ +G + PG + ++ + G R+ + AA+ S L+L
Sbjct: 172 GHPG-PKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKLLPL 230
Query: 124 GLCTRLATPP--RRAPDQAAEIGSRGSTKAQGPQQQPGSEGPS 164
RLA PP +R Q G + QGP PG GPS
Sbjct: 231 LNSVRLAPPPVIKRRTFQ----GEQSQASIQGPPGPPGPPGPS 269
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,985,261
Number of Sequences: 37866
Number of extensions: 1006723
Number of successful extensions: 5388
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 4647
Number of HSP's gapped (non-prelim): 884
length of query: 456
length of database: 18,247,518
effective HSP length: 106
effective length of query: 350
effective length of database: 14,233,722
effective search space: 4981802700
effective search space used: 4981802700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.