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Search of human proteins with 4826932
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826932 peptidylprolyl isomerase D [Homo sapiens]
(370 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4826932 peptidylprolyl isomerase D [Homo sapiens] 753 0.0
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 222 4e-58
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 207 9e-54
gi|5031987 peptidylprolyl isomerase F precursor [Homo sapiens] 204 1e-52
gi|10863927 peptidylprolyl isomerase A [Homo sapiens] 203 2e-52
gi|45439318 peptidylprolyl isomerase E isoform 3 [Homo sapiens] 198 7e-51
gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens] 198 7e-51
gi|5454154 peptidylprolyl isomerase H [Homo sapiens] 195 5e-50
gi|4758950 peptidylprolyl isomerase B precursor [Homo sapiens] 192 5e-49
gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens] 185 5e-47
gi|150418007 RAN binding protein 2 [Homo sapiens] 185 6e-47
gi|178057341 peptidylprolyl isomerase A (cyclophilin A)-like 4G ... 182 4e-46
gi|169164370 PREDICTED: similar to TRIMCyp isoform 1 [Homo sapiens] 182 5e-46
gi|88958081 PREDICTED: similar to TRIMCyp isoform 2 [Homo sapiens] 182 5e-46
gi|88953813 PREDICTED: similar to peptidylprolyl isomerase A iso... 182 5e-46
gi|169163623 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... 181 9e-46
gi|169164185 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... 181 9e-46
gi|169163387 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... 181 9e-46
gi|219842199 peptidylprolyl isomerase A (cyclophilin A)-like 4B ... 179 4e-45
gi|30102944 peptidylprolyl isomerase A-like 4A [Homo sapiens] 179 4e-45
gi|209417936 peptidylprolyl isomerase A (cyclophilin A)-like 4C ... 179 4e-45
gi|221139811 peptidylprolyl isomerase A (cyclophilin A)-like 4E ... 177 1e-44
gi|169211469 PREDICTED: similar to TRIMCyp [Homo sapiens] 173 3e-43
gi|89042897 PREDICTED: similar to TRIMCyp [Homo sapiens] 173 3e-43
gi|29737770 PREDICTED: similar to TRIMCyp [Homo sapiens] 173 3e-43
gi|4505991 peptidylprolyl isomerase C [Homo sapiens] 173 3e-43
gi|239753685 PREDICTED: similar to TRIMCyp [Homo sapiens] 171 1e-42
gi|239748293 PREDICTED: similar to TRIMCyp [Homo sapiens] 171 1e-42
gi|113414711 PREDICTED: similar to TRIMCyp [Homo sapiens] 171 1e-42
gi|169214050 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... 168 6e-42
>gi|4826932 peptidylprolyl isomerase D [Homo sapiens]
Length = 370
Score = 753 bits (1943), Expect = 0.0
Identities = 370/370 (100%), Positives = 370/370 (100%)
Query: 1 MSHPSPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGH 60
MSHPSPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGH
Sbjct: 1 MSHPSPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGH 60
Query: 61 TTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSM 120
TTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSM
Sbjct: 61 TTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSM 120
Query: 121 ANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAE 180
ANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAE
Sbjct: 121 ANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAE 180
Query: 181 CGELKEGDDGGIFPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWE 240
CGELKEGDDGGIFPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWE
Sbjct: 181 CGELKEGDDGGIFPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWE 240
Query: 241 MAIKKYAEVLRYVDSSKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEAL 300
MAIKKYAEVLRYVDSSKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEAL
Sbjct: 241 MAIKKYAEVLRYVDSSKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEAL 300
Query: 301 ELDPSNTKALYRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKVKQKIKAQKDK 360
ELDPSNTKALYRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKVKQKIKAQKDK
Sbjct: 301 ELDPSNTKALYRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKVKQKIKAQKDK 360
Query: 361 EKAVYAKMFA 370
EKAVYAKMFA
Sbjct: 361 EKAVYAKMFA 370
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 222 bits (566), Expect = 4e-58
Identities = 108/170 (63%), Positives = 125/170 (73%), Gaps = 1/170 (0%)
Query: 16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHR 75
PR FFD+ I + GR+V ELF+D+ PKT ENFR LCTGEKG G +T KPLH+K C FHR
Sbjct: 8 PRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHR 67
Query: 76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFIT 135
++K FM+QGGDFS NG GGESIYG FEDE+F KH++E LLSMAN G++TNGSQFFIT
Sbjct: 68 VVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFIT 127
Query: 136 TVPTPHLDGKHVVFGQVIKGIGVARILENVEV-KGEKPAKLCVIAECGEL 184
T PTPHLDG HVVFGQVI G V R +EN + KP I CGEL
Sbjct: 128 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 177
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 207 bits (528), Expect = 9e-54
Identities = 104/190 (54%), Positives = 128/190 (67%), Gaps = 1/190 (0%)
Query: 16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHR 75
P+ FD++I E VGRI+ +LF+DI PKT +NF LC+GEKG+G TTGK L +KG FHR
Sbjct: 7 PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHR 66
Query: 76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFIT 135
++K FMIQGGDFS NG GGESIYG F+DENF KHDR LLSMAN G++TNGSQFFIT
Sbjct: 67 VVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFIT 126
Query: 136 TVPTPHLDGKHVVFGQVIKGIGVARILENVEV-KGEKPAKLCVIAECGELKEGDDGGIFP 194
T P PHLDG HVVFG VI G V +EN++ +P + +CG L +F
Sbjct: 127 TKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATKSIKDVFE 186
Query: 195 KDGSGDSHPD 204
K +H +
Sbjct: 187 KKRKKPTHSE 196
>gi|5031987 peptidylprolyl isomerase F precursor [Homo sapiens]
Length = 207
Score = 204 bits (519), Expect = 1e-52
Identities = 102/174 (58%), Positives = 124/174 (71%), Gaps = 8/174 (4%)
Query: 11 SNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKG 70
S+ NP V+ DVD G+ +GR+VLEL AD+VPKTAENFRALCTGEKG G +KG
Sbjct: 41 SSSGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKG 92
Query: 71 CPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGS 130
FHR+I FM Q GDF+N NGTGG+SIYG +F DENF KH G+LSMANAG NTNGS
Sbjct: 93 STFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGS 152
Query: 131 QFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184
QFFI T+ T LDGKHVVFG V +G+ V + +E+ K + +K VI +CG+L
Sbjct: 153 QFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 206
>gi|10863927 peptidylprolyl isomerase A [Homo sapiens]
Length = 165
Score = 203 bits (517), Expect = 2e-52
Identities = 103/171 (60%), Positives = 121/171 (70%), Gaps = 8/171 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
NP VFFD+ + GE +GR+ ELFAD VPKTAENFRAL TGEKG G +KG FH
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM QGGDF+ NGTGG+SIYGEKFEDENF KH G+LSMANAG NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGELK 185
T T LDGKHVVFG+V +G+ + +E + K +K IA+CG+L+
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE 165
>gi|45439318 peptidylprolyl isomerase E isoform 3 [Homo sapiens]
Length = 235
Score = 198 bits (503), Expect = 7e-51
Identities = 103/178 (57%), Positives = 125/178 (70%), Gaps = 9/178 (5%)
Query: 6 PQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKP 65
P AK + SNP+V+ D+ IG + GRI + L +D+VP TAENFR LCT EKG G
Sbjct: 65 PIAKKAR-SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG------ 117
Query: 66 LHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGR 125
FKG FHRII +FM QGGDF+N NGTGG+SIYG+KF+DENF KH GLLSMAN+G
Sbjct: 118 --FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 175
Query: 126 NTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGE 183
NTNGSQFF+T T LDGKHVVFG+V +G+ V R +E K KP + +IA+CGE
Sbjct: 176 NTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 233
>gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens]
Length = 301
Score = 198 bits (503), Expect = 7e-51
Identities = 103/178 (57%), Positives = 125/178 (70%), Gaps = 9/178 (5%)
Query: 6 PQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKP 65
P AK + SNP+V+ D+ IG + GRI + L +D+VP TAENFR LCT EKG G
Sbjct: 131 PIAKKAR-SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG------ 183
Query: 66 LHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGR 125
FKG FHRII +FM QGGDF+N NGTGG+SIYG+KF+DENF KH GLLSMAN+G
Sbjct: 184 --FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 241
Query: 126 NTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGE 183
NTNGSQFF+T T LDGKHVVFG+V +G+ V R +E K KP + +IA+CGE
Sbjct: 242 NTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299
>gi|5454154 peptidylprolyl isomerase H [Homo sapiens]
Length = 177
Score = 195 bits (496), Expect = 5e-50
Identities = 102/175 (58%), Positives = 121/175 (69%), Gaps = 4/175 (2%)
Query: 11 SNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKG 70
S+P NP VFFDV IGG+ VGR+ +ELFAD+VPKTAENFR CTGE G P+ +KG
Sbjct: 6 SSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEF---RKDGVPIGYKG 62
Query: 71 CPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGS 130
FHR+IK FMIQGGDF N +GTG SIY F DENF +H GLLSMAN+G +TNG
Sbjct: 63 STFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGC 122
Query: 131 QFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEV-KGEKPAKLCVIAECGEL 184
QFFIT LDGKHVVFG++I G+ V R +ENV KP VI++CGE+
Sbjct: 123 QFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>gi|4758950 peptidylprolyl isomerase B precursor [Homo sapiens]
Length = 216
Score = 192 bits (487), Expect = 5e-49
Identities = 99/187 (52%), Positives = 127/187 (67%), Gaps = 13/187 (6%)
Query: 4 PSPQAKPSNPSNPRV----FFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIG 59
P P A P+V +FD+ IG E VGR++ LF VPKT +NF AL TGEKG G
Sbjct: 28 PGPSAADEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG 87
Query: 60 HTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLS 119
+ K FHR+IK FMIQGGDF+ +GTGG+SIYGE+F DENF KH G +S
Sbjct: 88 YKNSK--------FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVS 139
Query: 120 MANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKG-EKPAKLCVI 178
MANAG++TNGSQFFITTV T LDGKHVVFG+V++G+ V R +E+ + +KP K +I
Sbjct: 140 MANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVII 199
Query: 179 AECGELK 185
A+CG+++
Sbjct: 200 ADCGKIE 206
>gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens]
Length = 296
Score = 185 bits (470), Expect = 5e-47
Identities = 96/161 (59%), Positives = 115/161 (71%), Gaps = 9/161 (5%)
Query: 6 PQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKP 65
P AK + SNP+V+ D+ IG + GRI + L +D+VP TAENFR LCT EKG G
Sbjct: 131 PIAKKAR-SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG------ 183
Query: 66 LHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGR 125
FKG FHRII +FM QGGDF+N NGTGG+SIYG+KF+DENF KH GLLSMAN+G
Sbjct: 184 --FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 241
Query: 126 NTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVE 166
NTNGSQFF+T T LDGKHVVFG+V +G+ V R +E E
Sbjct: 242 NTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEKQE 282
>gi|150418007 RAN binding protein 2 [Homo sapiens]
Length = 3224
Score = 185 bits (469), Expect = 6e-47
Identities = 97/182 (53%), Positives = 118/182 (64%), Gaps = 8/182 (4%)
Query: 3 HPSPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTT 62
H S A+ S +NP VFFDV GE +GRI +ELF++IVP+TAENFRALCTGEKG G
Sbjct: 3051 HVSLAAELSKETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG--- 3107
Query: 63 GKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMAN 122
FK FHR+I F+ QGGD + +GTGG+SIYG+KFEDENF KH GLLSMAN
Sbjct: 3108 -----FKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMAN 3162
Query: 123 AGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECG 182
G+NTN SQF IT HLD KHVVFG V G+ + +E+ + I ECG
Sbjct: 3163 QGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECG 3222
Query: 183 EL 184
++
Sbjct: 3223 QI 3224
>gi|178057341 peptidylprolyl isomerase A (cyclophilin A)-like 4G
[Homo sapiens]
Length = 164
Score = 182 bits (462), Expect = 4e-46
Identities = 91/169 (53%), Positives = 115/169 (68%), Gaps = 8/169 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
N +FFD+ + G+ +GRI ++ FAD +PKTAENFRAL TGEKG +KG FH
Sbjct: 3 NSVIFFDITVDGKPLGRISIKQFADKIPKTAENFRALSTGEKGF--------RYKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM QGGDF++ NGTG +SIYGEKF+DEN KH G+LSMANAG NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGE 183
T T LDGKHV FG+V + + + +E+ + K +K IA+CG+
Sbjct: 115 CTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163
>gi|169164370 PREDICTED: similar to TRIMCyp isoform 1 [Homo sapiens]
Length = 165
Score = 182 bits (461), Expect = 5e-46
Identities = 93/171 (54%), Positives = 115/171 (67%), Gaps = 8/171 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
NP VFF + + GE +GRI ELFAD PKTAENF AL TGEKG G +KGC FH
Sbjct: 3 NPTVFFHISVDGESLGRISFELFADKFPKTAENFCALNTGEKGFG--------YKGCCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM GGDF++ NGTGG+SIYGEK +D+NF KH G+LSMANAG NTNGSQFFI
Sbjct: 55 RIIPGFMCHGGDFTHHNGTGGKSIYGEKVDDDNFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGELK 185
T + LD KHVV G+V +G+ + +E+ + K +K I + G+L+
Sbjct: 115 CTAKSEWLDSKHVVIGKVKEGMNIVEAMEHFGSRNGKTSKKVTIPDFGQLE 165
>gi|88958081 PREDICTED: similar to TRIMCyp isoform 2 [Homo sapiens]
Length = 165
Score = 182 bits (461), Expect = 5e-46
Identities = 93/171 (54%), Positives = 115/171 (67%), Gaps = 8/171 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
NP VFF + + GE +GRI ELFAD PKTAENF AL TGEKG G +KGC FH
Sbjct: 3 NPTVFFHISVDGESLGRISFELFADKFPKTAENFCALNTGEKGFG--------YKGCCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM GGDF++ NGTGG+SIYGEK +D+NF KH G+LSMANAG NTNGSQFFI
Sbjct: 55 RIIPGFMCHGGDFTHHNGTGGKSIYGEKVDDDNFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGELK 185
T + LD KHVV G+V +G+ + +E+ + K +K I + G+L+
Sbjct: 115 CTAKSEWLDSKHVVIGKVKEGMNIVEAMEHFGSRNGKTSKKVTIPDFGQLE 165
>gi|88953813 PREDICTED: similar to peptidylprolyl isomerase A
isoform 2 [Homo sapiens]
Length = 165
Score = 182 bits (461), Expect = 5e-46
Identities = 93/171 (54%), Positives = 115/171 (67%), Gaps = 8/171 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
NP VFF + + GE +GRI ELFAD PKTAENF AL TGEKG G +KGC FH
Sbjct: 3 NPTVFFHISVDGESLGRISFELFADKFPKTAENFCALNTGEKGFG--------YKGCCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM GGDF++ NGTGG+SIYGEK +D+NF KH G+LSMANAG NTNGSQFFI
Sbjct: 55 RIIPGFMCHGGDFTHHNGTGGKSIYGEKVDDDNFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGELK 185
T + LD KHVV G+V +G+ + +E+ + K +K I + G+L+
Sbjct: 115 CTAKSEWLDSKHVVIGKVKEGMNIVEAMEHFGSRNGKTSKKVTIPDFGQLE 165
>gi|169163623 PREDICTED: similar to TRIM5/CypA fusion protein [Homo
sapiens]
Length = 234
Score = 181 bits (459), Expect = 9e-46
Identities = 92/170 (54%), Positives = 115/170 (67%), Gaps = 8/170 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
NP VFFD+ + G+ +G + +FAD + KTA+NFRAL TGEKG L +KG FH
Sbjct: 3 NPTVFFDISVSGKPLGHVSFRIFADKLSKTAQNFRALSTGEKG--------LDYKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM QGGDF+ NGTGG+S+YGEKF+DENF K R G+LSMA AG NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTYNNGTGGKSLYGEKFDDENFILKRIRPGILSMAKAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184
T T L GKHVVFG+V +G+ + +E + K +K IA+CG+L
Sbjct: 115 CTAXTEWLIGKHVVFGKVKEGMNIVEAMEPFGSRNGKTSKKITIADCGQL 164
>gi|169164185 PREDICTED: similar to TRIM5/CypA fusion protein [Homo
sapiens]
Length = 234
Score = 181 bits (459), Expect = 9e-46
Identities = 92/170 (54%), Positives = 115/170 (67%), Gaps = 8/170 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
NP VFFD+ + G+ +G + +FAD + KTA+NFRAL TGEKG L +KG FH
Sbjct: 3 NPTVFFDISVSGKPLGHVSFRIFADKLSKTAQNFRALSTGEKG--------LDYKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM QGGDF+ NGTGG+S+YGEKF+DENF K R G+LSMA AG NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTYNNGTGGKSLYGEKFDDENFILKRIRPGILSMAKAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184
T T L GKHVVFG+V +G+ + +E + K +K IA+CG+L
Sbjct: 115 CTAXTEWLIGKHVVFGKVKEGMNIVEAMEPFGSRNGKTSKKITIADCGQL 164
>gi|169163387 PREDICTED: similar to TRIM5/CypA fusion protein [Homo
sapiens]
Length = 272
Score = 181 bits (459), Expect = 9e-46
Identities = 92/170 (54%), Positives = 115/170 (67%), Gaps = 8/170 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
NP VFFD+ + G+ +G + +FAD + KTA+NFRAL TGEKG L +KG FH
Sbjct: 3 NPTVFFDISVSGKPLGHVSFRIFADKLSKTAQNFRALSTGEKG--------LDYKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM QGGDF+ NGTGG+S+YGEKF+DENF K R G+LSMA AG NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTYNNGTGGKSLYGEKFDDENFILKRIRPGILSMAKAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184
T T L GKHVVFG+V +G+ + +E + K +K IA+CG+L
Sbjct: 115 CTAKTEWLIGKHVVFGKVKEGMNIVEAMEPFGSRNGKTSKKITIADCGQL 164
>gi|219842199 peptidylprolyl isomerase A (cyclophilin A)-like 4B
[Homo sapiens]
Length = 164
Score = 179 bits (454), Expect = 4e-45
Identities = 91/169 (53%), Positives = 113/169 (66%), Gaps = 8/169 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
N VFFD+ + G+ +GRI ++LFAD + KTAENFRAL TGEKG +KG FH
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGF--------RYKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM QGGDF+ NGTG +SIYGEKF+DEN KH G+LSMANAG NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGE 183
T LDGKHV FG+V + + + +E+ + K +K IA+CG+
Sbjct: 115 CAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163
>gi|30102944 peptidylprolyl isomerase A-like 4A [Homo sapiens]
Length = 164
Score = 179 bits (454), Expect = 4e-45
Identities = 91/169 (53%), Positives = 113/169 (66%), Gaps = 8/169 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
N VFFD+ + G+ +GRI ++LFAD + KTAENFRAL TGEKG +KG FH
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGF--------RYKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM QGGDF+ NGTG +SIYGEKF+DEN KH G+LSMANAG NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGE 183
T LDGKHV FG+V + + + +E+ + K +K IA+CG+
Sbjct: 115 CAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163
>gi|209417936 peptidylprolyl isomerase A (cyclophilin A)-like 4C
[Homo sapiens]
Length = 164
Score = 179 bits (454), Expect = 4e-45
Identities = 91/169 (53%), Positives = 113/169 (66%), Gaps = 8/169 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
N VFFD+ + G+ +GRI ++LFAD + KTAENFRAL TGEKG +KG FH
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGF--------RYKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM QGGDF+ NGTG +SIYGEKF+DEN KH G+LSMANAG NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGE 183
T LDGKHV FG+V + + + +E+ + K +K IA+CG+
Sbjct: 115 CAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163
>gi|221139811 peptidylprolyl isomerase A (cyclophilin A)-like 4E
[Homo sapiens]
Length = 164
Score = 177 bits (450), Expect = 1e-44
Identities = 91/169 (53%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
N VFF++ G+ +GRI ++LFAD +PKTAENFRAL TGEKG +KG FH
Sbjct: 3 NSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGF--------RYKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM QGGDF+ NGTG +SIYGEKF+DEN KH G+LSMANAG NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGE 183
T LDGKHV FG+V + + + E+ + K +K IA+CG+
Sbjct: 115 CAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQ 163
>gi|169211469 PREDICTED: similar to TRIMCyp [Homo sapiens]
Length = 168
Score = 173 bits (438), Expect = 3e-43
Identities = 90/169 (53%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHR 75
P VFFD+ I + +G + +LFAD PKTAENF AL TGEKG G +K FHR
Sbjct: 7 PTVFFDITINSKPLGHVSFKLFADKFPKTAENFPALSTGEKGFG--------YKSSCFHR 58
Query: 76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFIT 135
II FM QGGDF++ NGTG +SIYGEKF+DENF KH G+ SMANAG NTNGSQF
Sbjct: 59 IIPGFMCQGGDFTHHNGTGVKSIYGEKFDDENFILKHTGPGIFSMANAGPNTNGSQFCNC 118
Query: 136 TVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184
T T LDG HVV G+V +G+ +A +E + K +K IA+CG+L
Sbjct: 119 TAKTAWLDGMHVVLGKVKEGMNIAEAMERFGSRNGKTSKKITIADCGQL 167
>gi|89042897 PREDICTED: similar to TRIMCyp [Homo sapiens]
Length = 168
Score = 173 bits (438), Expect = 3e-43
Identities = 90/169 (53%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHR 75
P VFFD+ I + +G + +LFAD PKTAENF AL TGEKG G +K FHR
Sbjct: 7 PTVFFDITINSKPLGHVSFKLFADKFPKTAENFPALSTGEKGFG--------YKSSCFHR 58
Query: 76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFIT 135
II FM QGGDF++ NGTG +SIYGEKF+DENF KH G+ SMANAG NTNGSQF
Sbjct: 59 IIPGFMCQGGDFTHHNGTGVKSIYGEKFDDENFILKHTGPGIFSMANAGPNTNGSQFCNC 118
Query: 136 TVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184
T T LDG HVV G+V +G+ +A +E + K +K IA+CG+L
Sbjct: 119 TAKTAWLDGMHVVLGKVKEGMNIAEAMERFGSRNGKTSKKITIADCGQL 167
>gi|29737770 PREDICTED: similar to TRIMCyp [Homo sapiens]
Length = 168
Score = 173 bits (438), Expect = 3e-43
Identities = 90/169 (53%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHR 75
P VFFD+ I + +G + +LFAD PKTAENF AL TGEKG G +K FHR
Sbjct: 7 PTVFFDITINSKPLGHVSFKLFADKFPKTAENFPALSTGEKGFG--------YKSSCFHR 58
Query: 76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFIT 135
II FM QGGDF++ NGTG +SIYGEKF+DENF KH G+ SMANAG NTNGSQF
Sbjct: 59 IIPGFMCQGGDFTHHNGTGVKSIYGEKFDDENFILKHTGPGIFSMANAGPNTNGSQFCNC 118
Query: 136 TVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184
T T LDG HVV G+V +G+ +A +E + K +K IA+CG+L
Sbjct: 119 TAKTAWLDGMHVVLGKVKEGMNIAEAMERFGSRNGKTSKKITIADCGQL 167
>gi|4505991 peptidylprolyl isomerase C [Homo sapiens]
Length = 212
Score = 173 bits (438), Expect = 3e-43
Identities = 94/169 (55%), Positives = 111/169 (65%), Gaps = 9/169 (5%)
Query: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRI 76
+VFFDV IG + VGRIV+ LF +VPKT ENF AL TGEKG G +KG FHR+
Sbjct: 39 KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG--------YKGSKFHRV 90
Query: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITT 136
IK FMIQGGD + +GTGG SIYGE F DENF KH G +SMANAG +TNGSQFFIT
Sbjct: 91 IKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 150
Query: 137 VPTPHLDGKHVVFGQVIKGIGVARILENVEVKG-EKPAKLCVIAECGEL 184
LDGKHVVFG+VI G+ V +E G ++P C I G++
Sbjct: 151 TKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 199
>gi|239753685 PREDICTED: similar to TRIMCyp [Homo sapiens]
Length = 164
Score = 171 bits (432), Expect = 1e-42
Identities = 89/170 (52%), Positives = 109/170 (64%), Gaps = 8/170 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
NP VF D+ + GE +G I ELFAD +PKT ENF AL TGEKG G +KG FH
Sbjct: 3 NPTVFLDIAVHGEPLGGIPFELFADKIPKTPENFHALSTGEKGFG--------YKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII M Q GDF++ NGTGG+SI GEKF+D+NF KH G+LSMAN G NTN Q FI
Sbjct: 55 RIIPGVMCQRGDFTSHNGTGGKSIQGEKFDDKNFILKHAGPGILSMANTGPNTNSFQCFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184
T LDGKHVVFG+V +GI + +E + K +K I++CG+L
Sbjct: 115 CTAKAEWLDGKHVVFGKVKEGINIVEAMERFGSRNGKTSKKITISDCGKL 164
>gi|239748293 PREDICTED: similar to TRIMCyp [Homo sapiens]
Length = 164
Score = 171 bits (432), Expect = 1e-42
Identities = 89/170 (52%), Positives = 109/170 (64%), Gaps = 8/170 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
NP VF D+ + GE +G I ELFAD +PKT ENF AL TGEKG G +KG FH
Sbjct: 3 NPTVFLDIAVHGEPLGGIPFELFADKIPKTPENFHALSTGEKGFG--------YKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII M Q GDF++ NGTGG+SI GEKF+D+NF KH G+LSMAN G NTN Q FI
Sbjct: 55 RIIPGVMCQRGDFTSHNGTGGKSIQGEKFDDKNFILKHAGPGILSMANTGPNTNSFQCFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184
T LDGKHVVFG+V +GI + +E + K +K I++CG+L
Sbjct: 115 CTAKAEWLDGKHVVFGKVKEGINIVEAMERFGSRNGKTSKKITISDCGKL 164
>gi|113414711 PREDICTED: similar to TRIMCyp [Homo sapiens]
Length = 164
Score = 171 bits (432), Expect = 1e-42
Identities = 89/170 (52%), Positives = 109/170 (64%), Gaps = 8/170 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
NP VF D+ + GE +G I ELFAD +PKT ENF AL TGEKG G +KG FH
Sbjct: 3 NPTVFLDIAVHGEPLGGIPFELFADKIPKTPENFHALSTGEKGFG--------YKGSCFH 54
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII M Q GDF++ NGTGG+SI GEKF+D+NF KH G+LSMAN G NTN Q FI
Sbjct: 55 RIIPGVMCQRGDFTSHNGTGGKSIQGEKFDDKNFILKHAGPGILSMANTGPNTNSFQCFI 114
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184
T LDGKHVVFG+V +GI + +E + K +K I++CG+L
Sbjct: 115 CTAKAEWLDGKHVVFGKVKEGINIVEAMERFGSRNGKTSKKITISDCGKL 164
>gi|169214050 PREDICTED: similar to TRIM5/CypA fusion protein [Homo
sapiens]
Length = 210
Score = 168 bits (426), Expect = 6e-42
Identities = 89/170 (52%), Positives = 108/170 (63%), Gaps = 8/170 (4%)
Query: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFH 74
NP VFFD+ + GE +G + ELFAD PK+AE AL TGEKG G +KG FH
Sbjct: 49 NPTVFFDIAVDGEPLGHVSFELFADKFPKSAEKVHALSTGEKGFG--------YKGSCFH 100
Query: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFI 134
RII FM QGGDF+ TGG+S+Y EKF+DENF KH G+LSMANAG NTN SQ FI
Sbjct: 101 RIIPGFMCQGGDFTRHKDTGGKSLYREKFDDENFILKHTGPGILSMANAGPNTNCSQCFI 160
Query: 135 TTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184
T T LDGKHVVFG V +G+ + +E + K +K IA+C +L
Sbjct: 161 CTAKTEGLDGKHVVFGTVKEGMKIVEAMEYFGPRNGKTSKEITIADCEQL 210
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,857,203
Number of Sequences: 37866
Number of extensions: 705080
Number of successful extensions: 2078
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1763
Number of HSP's gapped (non-prelim): 219
length of query: 370
length of database: 18,247,518
effective HSP length: 104
effective length of query: 266
effective length of database: 14,309,454
effective search space: 3806314764
effective search space used: 3806314764
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.