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Search of human proteins with 4826760
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
(415 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sap... 852 0.0
gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sap... 852 0.0
gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sap... 852 0.0
gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sap... 852 0.0
gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sap... 852 0.0
gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] 852 0.0
gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapi... 662 0.0
gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sap... 646 0.0
gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapi... 646 0.0
gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a... 353 1e-97
gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b... 340 1e-93
gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Hom... 266 2e-71
gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Hom... 245 5e-65
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens] 126 3e-29
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens] 126 3e-29
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens] 126 3e-29
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens] 126 3e-29
gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens] 126 3e-29
gi|45935393 RNA binding motif protein 35B [Homo sapiens] 109 4e-24
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 90 3e-18
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 90 3e-18
gi|118722349 RNA binding motif protein 12B [Homo sapiens] 74 3e-13
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 72 1e-12
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 72 1e-12
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 72 1e-12
gi|55956788 nucleolin [Homo sapiens] 45 9e-05
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 42 0.001
gi|50053795 eukaryotic translation initiation factor 4B [Homo sa... 41 0.002
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 40 0.003
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 40 0.003
>gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 852 bits (2202), Expect = 0.0
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
>gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 852 bits (2202), Expect = 0.0
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
>gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 852 bits (2202), Expect = 0.0
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
>gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 852 bits (2202), Expect = 0.0
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
>gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 852 bits (2202), Expect = 0.0
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
>gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
Length = 415
Score = 852 bits (2202), Expect = 0.0
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
>gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo
sapiens]
Length = 449
Score = 662 bits (1707), Expect = 0.0
Identities = 322/435 (74%), Positives = 361/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
MMLG EGGEGFVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
Query: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
L SED+VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
GGY++Y+G +DGYGF +D FGRDL+YC SGM DHRYGD T QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQ------- 353
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQ
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
Query: 354 -------------HRYIELFLNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
HRY+ELFLNST GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
Query: 401 YGAGYSGQNSMGGYD 415
YG GY GQ+SM GYD
Sbjct: 420 YGGGYGGQSSMSGYD 434
>gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 646 bits (1667), Expect = 0.0
Identities = 313/435 (71%), Positives = 357/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
MML EG EGFVVK+RGLPWSCS ++V F SDC I +G +G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
Query: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
L SE++VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNG+TLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
GGY++Y G +DGYGF +D FGRDL+YC SGM DHRYGD + QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHR----- 355
TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHE+AVAAM+KD+ANMQHR
Sbjct: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
Query: 356 ---------------YIELFLNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Y+ELFLNST GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
Query: 401 YGAGYSGQNSMGGYD 415
YG GY GQ+SM GYD
Sbjct: 420 YGGGYGGQSSMSGYD 434
>gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 646 bits (1667), Expect = 0.0
Identities = 313/435 (71%), Positives = 357/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
MML EG EGFVVK+RGLPWSCS ++V F SDC I +G +G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
Query: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
L SE++VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNG+TLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
GGY++Y G +DGYGF +D FGRDL+YC SGM DHRYGD + QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHR----- 355
TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHE+AVAAM+KD+ANMQHR
Sbjct: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
Query: 356 ---------------YIELFLNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Y+ELFLNST GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
Query: 401 YGAGYSGQNSMGGYD 415
YG GY GQ+SM GYD
Sbjct: 420 YGGGYGGQSSMSGYD 434
>gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a
[Homo sapiens]
Length = 346
Score = 353 bits (907), Expect = 1e-97
Identities = 190/328 (57%), Positives = 230/328 (70%), Gaps = 13/328 (3%)
Query: 93 MDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
MDWV+KH+GPN A +DG VRLRGLPFGC+KEEIVQFF GLEIVPNGITL +D +G+ T
Sbjct: 1 MDWVMKHNGPNDA---SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57
Query: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDR 212
GEAFVQFAS+E+AE ALGKHKERIGHRYIE+F+SS+ E++ + DPP + + QRPGPYDR
Sbjct: 58 GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116
Query: 213 P-GTARRYIGIVKQAGLERMRPG--AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLS 269
P G Y G + + +RMR G Y GYGG+++Y G ++ YG+ D F D
Sbjct: 117 PIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNN-YGYGNDGFD-DRMRDGR 174
Query: 270 GMYDHRYGDS-EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
GM H YG + + + GH VHMRGLP++ATENDI NFFSPLNP+RVHI+IG DGR T
Sbjct: 175 GMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 234
Query: 329 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSAA--Q 386
GEADVEF THE+AVAAMSKD+ NMQHRYIELFLNST G +G S M G G Q
Sbjct: 235 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSG-MGGYGRDGMDNQ 293
Query: 387 ATYSGLESQSVSGCYGAGYSGQNSMGGY 414
Y + + Y GY + +GGY
Sbjct: 294 GGYGSVGRMGMGNNYSGGYGTPDGLGGY 321
Score = 71.6 bits (174), Expect = 1e-12
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 4 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGS 63
GP V+LRGLP+ CS E++ F I G+ +GR +GEAFV+ S
Sbjct: 9 GPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPN--GITLTMDYQGRSTGEAFVQFAS 66
Query: 64 EDDVKMALKKDRESMGHRYIEVFKSHRTEM 93
++ + AL K +E +GHRYIE+F+S R+E+
Sbjct: 67 KEIAENALGKHKERIGHRYIEIFRSSRSEI 96
Score = 58.2 bits (139), Expect = 1e-08
Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEEAVAAMSKD 348
V +RGLP+ ++ +I FF L V I + D GR TGEA V+FA+ E A A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 349 RANMQHRYIELFLNSTT-------------GASNGAYSSQVMQGMGVSAAQATYSGLESQ 395
+ + HRYIE+F +S + G G Y + G A +
Sbjct: 78 KERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDRMR 137
Query: 396 SVSGCYGAGYSGQNSMGGYD 415
Y GY G + GGY+
Sbjct: 138 RGGDGYDGGYGGFDDYGGYN 157
Score = 56.2 bits (134), Expect = 5e-08
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 10 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
G V +RGLP+ + D+ NF S VH +GR +GEA VE + +D
Sbjct: 194 GHFVHMRGLPFRATENDIANFFSPLN----PIRVHIDIGADGRATGEADVEFVTHEDAVA 249
Query: 70 ALKKDRESMGHRYIEVF 86
A+ KD+ +M HRYIE+F
Sbjct: 250 AMSKDKNNMQHRYIELF 266
>gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b
[Homo sapiens]
Length = 331
Score = 340 bits (872), Expect = 1e-93
Identities = 187/328 (57%), Positives = 224/328 (68%), Gaps = 28/328 (8%)
Query: 93 MDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
MDWV+KH+GPN A +DG VRLRGLPFGC+KEEIVQFF GLEIVPNGITL +D +G+ T
Sbjct: 1 MDWVMKHNGPNDA---SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57
Query: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDR 212
GEAFVQFAS+E+AE ALGKHKERIGHRYIE+F+SS+ E++ + DPP + + QRPGPYDR
Sbjct: 58 GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116
Query: 213 PGTARRYIGIVKQAGLERMRPGAYSTG---YGGYEEYSGLSDGYGFTTDLFGRDLSYCLS 269
P IG R G Y G YGG+++Y G ++ YG+ D F D
Sbjct: 117 P------IG---------GRGGYYGAGRGSYGGFDDYGGYNN-YGYGNDGFD-DRMRDGR 159
Query: 270 GMYDHRYGDS-EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
GM H YG + + + GH VHMRGLP++ATENDI NFFSPLNP+RVHI+IG DGR T
Sbjct: 160 GMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 219
Query: 329 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSAA--Q 386
GEADVEF THE+AVAAMSKD+ NMQHRYIELFLNST G +G S M G G Q
Sbjct: 220 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSG-MGGYGRDGMDNQ 278
Query: 387 ATYSGLESQSVSGCYGAGYSGQNSMGGY 414
Y + + Y GY + +GGY
Sbjct: 279 GGYGSVGRMGMGNNYSGGYGTPDGLGGY 306
Score = 113 bits (282), Expect = 4e-25
Identities = 94/319 (29%), Positives = 130/319 (40%), Gaps = 80/319 (25%)
Query: 4 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGS 63
GP V+LRGLP+ CS E++ F I G+ +GR +GEAFV+ S
Sbjct: 9 GPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPN--GITLTMDYQGRSTGEAFVQFAS 66
Query: 64 EDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL-------------------------- 97
++ + AL K +E +GHRYIE+F+S R+E+
Sbjct: 67 KEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYG 126
Query: 98 ----------KHSGPNSADSANDGF------------------------------VRLRG 117
+ G N+ NDGF V +RG
Sbjct: 127 AGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRG 186
Query: 118 LPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIG 177
LPF T+ +I FFS L P + + + +G+ TGEA V+F + E A A+ K K +
Sbjct: 187 LPFRATENDIANFFSPLN--PIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQ 244
Query: 178 HRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARR-YIGIVKQAGLERMRPGAY 236
HRYIE+F +S S M G Y R G + G V + G+ G Y
Sbjct: 245 HRYIELFLNSTPGGGS-------GMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGY 297
Query: 237 ST--GYGGYEEYSGLSDGY 253
T G GGY G S GY
Sbjct: 298 GTPDGLGGYGRGGGGSGGY 316
>gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Homo
sapiens]
Length = 480
Score = 266 bits (681), Expect = 2e-71
Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%)
Query: 3 LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62
L E + F+++ +GLPWSC++EDV NF SDC I +G G+HF+ R+G++ G+A +E+
Sbjct: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
Query: 63 SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122
SE DV+ AL+K R MG RY+EV++ + ++D ++K S+ NDG VRLRGLP+ C
Sbjct: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
Query: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181
+++IV FF+GL IV IT +D G + TGEA+VQF E+A +AL KH+E IG+RYI
Sbjct: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
Query: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240
E+F S + EVR+ ++G K + Y T
Sbjct: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354
Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
+EE+ D T F + L + ++ +++ H VHMRGLP++A
Sbjct: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412
Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
DI NFF+PL PVR+ +E G+ TGEADV F THE+AVAAM KDR+++ HRYIELF
Sbjct: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
Query: 361 LNS 363
LNS
Sbjct: 473 LNS 475
>gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Homo
sapiens]
Length = 318
Score = 245 bits (626), Expect = 5e-65
Identities = 142/342 (41%), Positives = 200/342 (58%), Gaps = 31/342 (9%)
Query: 24 VEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 83
+EDV NF SDC I +G G+HF+ R+G++ G+A +E+ SE DV+ AL+K R MG RY+
Sbjct: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
Query: 84 EVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL 143
EV++ + ++D ++K S+ NDG VRLRGLP+ C +++IV FF+GL IV IT
Sbjct: 61 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITF 118
Query: 144 PVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM 202
+D G + TGEA+VQF E+A +AL KH+E IG+RYIE+F S + EVR+
Sbjct: 119 VMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT--------- 169
Query: 203 SVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GYGGYEEYSGLSDGYGFTTDLFG 261
++G K + Y T +EE+ D T F
Sbjct: 170 ----------------HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTA--FE 211
Query: 262 RDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
+ L + ++ +++ H VHMRGLP++A DI NFF+PL PVR+ +E
Sbjct: 212 SEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEY 271
Query: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 363
G+ TGEADV F THE+AVAAM KDR+++ HRYIELFLNS
Sbjct: 272 SSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
Score = 64.3 bits (155), Expect = 2e-10
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG-RQSGEAFVELGSEDDVKMA 70
VV+LRGLP+SC+ +D+ +F + I D + F+ G R++GEA+V+ + A
Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
Query: 71 LKKDRESMGHRYIEVFKSHRTEM 93
L K RE +G+RYIE+F S R E+
Sbjct: 145 LLKHREEIGNRYIEIFPSRRNEV 167
Score = 49.3 bits (116), Expect = 6e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
V +RGLP+ + +D+ NF + + Y+ G+ +GEA V + +D A+
Sbjct: 241 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 296
Query: 73 KDRESMGHRYIEVF 86
KDR + HRYIE+F
Sbjct: 297 KDRSHVHHRYIELF 310
>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
Length = 604
Score = 126 bits (317), Expect = 3e-29
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
VV+ RGLPW S +D+ F I G A + +GR++GEA V SE+ +AL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
++ + MG RYIEV+K+ + LK +G S + A N VR+RGLPF T E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
E+V FF + GI P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
Query: 183 VFKSSQEEVRS----YSDPPL 199
+F+S+ EV+ +S PL
Sbjct: 401 LFRSTAAEVQQVLNRFSSAPL 421
Score = 103 bits (257), Expect = 3e-22
Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 22/202 (10%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
+V++RGLP++ + E+V F C I G G+ F+ +GR +G+AFV E+ + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
L+K ++ +G RYIE+F+S E+ VL P FV
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
RLRGLP+ T E+I+ F +I +G+ + ++ +G+ +G+AF+Q S + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEVFKSSQEEV 191
K HK+ + RY+EVF+ S EE+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 69.7 bits (169), Expect = 5e-12
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
++LRGLP++ ++ED+ +FL + GVH + +GR SG+AF+++ S D MA +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRESMGHRYIEVFKSHRTEMDWVL 97
K +++M RY+EVF+ EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 54.7 bits (130), Expect = 2e-07
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
A T Y +E+ S +S + G + +S Y+HR+ D E + +G C
Sbjct: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
Query: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
V RGLP+++++ DI FF LN + + + GR GEA V F + E
Sbjct: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
Query: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
A+ + + +M RYIE+ FL G SN
Sbjct: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 SKDRANMQHRYIELF 360
K + + RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
+F + C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++
Sbjct: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
+ + A +AA + NM+ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
Length = 659
Score = 126 bits (317), Expect = 3e-29
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
VV+ RGLPW S +D+ F I G A + +GR++GEA V SE+ +AL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
++ + MG RYIEV+K+ + LK +G S + A N VR+RGLPF T E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
E+V FF + GI P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
Query: 183 VFKSSQEEVRS----YSDPPL 199
+F+S+ EV+ +S PL
Sbjct: 401 LFRSTAAEVQQVLNRFSSAPL 421
Score = 103 bits (257), Expect = 3e-22
Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 22/202 (10%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
+V++RGLP++ + E+V F C I G G+ F+ +GR +G+AFV E+ + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
L+K ++ +G RYIE+F+S E+ VL P FV
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
RLRGLP+ T E+I+ F +I +G+ + ++ +G+ +G+AF+Q S + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEVFKSSQEEV 191
K HK+ + RY+EVF+ S EE+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 69.7 bits (169), Expect = 5e-12
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
++LRGLP++ ++ED+ +FL + GVH + +GR SG+AF+++ S D MA +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRESMGHRYIEVFKSHRTEMDWVL 97
K +++M RY+EVF+ EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 54.7 bits (130), Expect = 2e-07
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
A T Y +E+ S +S + G + +S Y+HR+ D E + +G C
Sbjct: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
Query: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
V RGLP+++++ DI FF LN + + + GR GEA V F + E
Sbjct: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
Query: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
A+ + + +M RYIE+ FL G SN
Sbjct: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 SKDRANMQHRYIELF 360
K + + RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
+F + C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++
Sbjct: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
+ + A +AA + NM+ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
Length = 608
Score = 126 bits (317), Expect = 3e-29
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
VV+ RGLPW S +D+ F I G A + +GR++GEA V SE+ +AL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
++ + MG RYIEV+K+ + LK +G S + A N VR+RGLPF T E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
E+V FF + GI P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
Query: 183 VFKSSQEEVRS----YSDPPL 199
+F+S+ EV+ +S PL
Sbjct: 401 LFRSTAAEVQQVLNRFSSAPL 421
Score = 104 bits (259), Expect = 2e-22
Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 34/238 (14%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
+V++RGLP++ + E+V F C I G G+ F+ +GR +G+AFV E+ + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
L+K ++ +G RYIE+F+S E+ VL P FV
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
RLRGLP+ T E+I+ F +I +G+ + ++ +G+ +G+AF+Q S + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTA 216
K HK+ + RY+EVF+ S EE+ S PP K + P Y P A
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPA 563
Score = 54.7 bits (130), Expect = 2e-07
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
A T Y +E+ S +S + G + +S Y+HR+ D E + +G C
Sbjct: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
Query: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
V RGLP+++++ DI FF LN + + + GR GEA V F + E
Sbjct: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
Query: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
A+ + + +M RYIE+ FL G SN
Sbjct: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 SKDRANMQHRYIELF 360
K + + RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
+F + C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++
Sbjct: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
+ + A +AA + NM+ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
Length = 677
Score = 126 bits (317), Expect = 3e-29
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
VV+ RGLPW S +D+ F I G A + +GR++GEA V SE+ +AL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
++ + MG RYIEV+K+ + LK +G S + A N VR+RGLPF T E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
E+V FF + GI P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
Query: 183 VFKSSQEEVRS----YSDPPL 199
+F+S+ EV+ +S PL
Sbjct: 401 LFRSTAAEVQQVLNRFSSAPL 421
Score = 103 bits (257), Expect = 3e-22
Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 22/202 (10%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
+V++RGLP++ + E+V F C I G G+ F+ +GR +G+AFV E+ + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
L+K ++ +G RYIE+F+S E+ VL P FV
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
RLRGLP+ T E+I+ F +I +G+ + ++ +G+ +G+AF+Q S + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEVFKSSQEEV 191
K HK+ + RY+EVF+ S EE+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 69.7 bits (169), Expect = 5e-12
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
++LRGLP++ ++ED+ +FL + GVH + +GR SG+AF+++ S D MA +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRESMGHRYIEVFKSHRTEMDWVL 97
K +++M RY+EVF+ EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 54.7 bits (130), Expect = 2e-07
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
A T Y +E+ S +S + G + +S Y+HR+ D E + +G C
Sbjct: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
Query: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
V RGLP+++++ DI FF LN + + + GR GEA V F + E
Sbjct: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
Query: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
A+ + + +M RYIE+ FL G SN
Sbjct: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 SKDRANMQHRYIELF 360
K + + RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
+F + C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++
Sbjct: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
+ + A +AA + NM+ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
Length = 681
Score = 126 bits (317), Expect = 3e-29
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
VV+ RGLPW S +D+ F I G A + +GR++GEA V SE+ +AL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
++ + MG RYIEV+K+ + LK +G S + A N VR+RGLPF T E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
E+V FF + GI P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
Query: 183 VFKSSQEEVRS----YSDPPL 199
+F+S+ EV+ +S PL
Sbjct: 401 LFRSTAAEVQQVLNRFSSAPL 421
Score = 104 bits (260), Expect = 1e-22
Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
+V++RGLP++ + E+V F C I G G+ F+ +GR +G+AFV E+ + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
L+K ++ +G RYIE+F+S E+ VL P FV
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
RLRGLP+ T E+I+ F +I +G+ + ++ +G+ +G+AF+Q S + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217
K HK+ + RY+EVF+ S EE+ S PP K + P Y P A
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
Query: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269
I + + + R ST Y G + + + Y G L + LS
Sbjct: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
Query: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309
G V G V M+GL Y +I NFF
Sbjct: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
Score = 54.7 bits (130), Expect = 2e-07
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
A T Y +E+ S +S + G + +S Y+HR+ D E + +G C
Sbjct: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
Query: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
V RGLP+++++ DI FF LN + + + GR GEA V F + E
Sbjct: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
Query: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
A+ + + +M RYIE+ FL G SN
Sbjct: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 SKDRANMQHRYIELF 360
K + + RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
+F + C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++
Sbjct: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
+ + A +AA + NM+ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
>gi|45935393 RNA binding motif protein 35B [Homo sapiens]
Length = 717
Score = 109 bits (273), Expect = 4e-24
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 21/222 (9%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
VV+ RGLPW S +DV F + G GV +GR++GEA + + +AL
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
Query: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
++ + MG RYIEV+K+ E +K +G S + A + +RLRGLPF
Sbjct: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
Query: 126 EIVQFFSGLEIVPNG---ITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
+++ F V G + P+G+ TG+AF FA +ELA+ AL +HK +G RYIE
Sbjct: 363 DVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE 422
Query: 183 VFKSSQEEVRS----YSDPPL--KFMSVQRPGPYD-RPGTAR 217
+F+S+ EV+ Y+ PL + P P+ PGT R
Sbjct: 423 LFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGR 464
Score = 105 bits (263), Expect = 6e-23
Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 12 VVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
+++LRGLP+S DV FL +C + G G+ F+ +GR +G+AF E+ + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKH--SGP--------------NSADSANDGFVR 114
L++ + +G RYIE+F+S E+ VL SGP A VR
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVR 468
Query: 115 LRGLPFGCTKEEIVQFF--SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK- 171
LRGLP+ T E+I+ F + +I P+G+ + ++ +G+ +G+AF+Q S E A A +
Sbjct: 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528
Query: 172 HKERIGHRYIEVFKSSQEEV 191
HK+ + RY+EV S EE+
Sbjct: 529 HKKVMKERYVEVVPCSTEEM 548
Score = 71.2 bits (173), Expect = 2e-12
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 100 SGPNSADSANDG--FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFV 157
+GP S D VR RGLP+ + +++ +FF GL + G+ L ++ +G+ GEA +
Sbjct: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
Query: 158 QFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
+F E + AL +HK +G RYIEV+K++ EE
Sbjct: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
V+LRGLP++ ++ED+ +FL + GVH + ++GR SG+AF+++ S + A +
Sbjct: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
Query: 73 K-DRESMGHRYIEVFKSHRTEMDWVL 97
+ ++ M RY+EV EM VL
Sbjct: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 281 FTVQSTTGH-CVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
F + TG CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++
Sbjct: 456 FPLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQM 515
Query: 336 ATHEEAVAAMSK-DRANMQHRYIELFLNST 364
+ E A+AA + + M+ RY+E+ ST
Sbjct: 516 TSAERALAAAQRCHKKVMKERYVEVVPCST 545
Score = 50.1 bits (118), Expect = 4e-06
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIE-----IGPDGRVTGEADVEFATHEEAVAAM 345
+ +RGLP+ A D+ F P PV E PDGR TG+A FA E A AA+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 346 SKDRANMQHRYIELF 360
+ + + RYIELF
Sbjct: 410 RRHKGMLGKRYIELF 424
Score = 47.4 bits (111), Expect = 2e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
V RGLP+++++ D+ FF LN R V + + GR GEA + F E+ A+ +
Sbjct: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
Query: 349 RANMQHRYIELF 360
+ +M RYIE++
Sbjct: 309 KHHMGVRYIEVY 320
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 90.1 bits (222), Expect = 3e-18
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 38/211 (18%)
Query: 5 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE 64
P + V + G+P+S DV++F + VH + GR +G V+ S
Sbjct: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSP 353
Query: 65 DDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL--------KHSGPN------------- 103
D ALK++R M RY+EV S TE WV ++ GP+
Sbjct: 354 QDTFEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRS 411
Query: 104 ----------SADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
S GF V L+GLPF + ++ FF L+IV + I + P GK T
Sbjct: 412 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471
Query: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEV 183
GE FV+F ++ + AL +HK+ +G+R+I+V
Sbjct: 472 GEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502
Score = 84.3 bits (207), Expect = 2e-16
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 22/225 (9%)
Query: 10 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
GF V L+GLP+ + V +F I + + ++ Y G+ +GE FVE +E D K
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDS--IYIAYGPNGKATGEGFVEFRNEADYKA 486
Query: 70 ALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSGPNSADSAN-----DGFVR------ 114
AL + ++ MG+R+I+V K ++D + K S D +G V
Sbjct: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
Query: 115 -LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
+ +PF TK +++QF G+ + N + + VD G+ G+A VQF +++ A K+ H+
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
Query: 174 ERIGHRYIEVFKSSQEEVRSY-SDPPL---KFMSVQRPGPYDRPG 214
+++ R V + E++R +PP K + + PG PG
Sbjct: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
Score = 56.6 bits (135), Expect = 4e-08
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 288 GHCVHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
G CV+++GLP++A + +FF L+ V ++I GP+G+ TGE VEF + AA+
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
Query: 346 SKDRANMQHRYIEL 359
+ + M +R+I++
Sbjct: 489 CRHKQYMGNRFIQV 502
Score = 47.4 bits (111), Expect = 2e-05
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
V++L+GLP D+++F S TI DG GVH + G + GEAF+ +++D ++ +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
Query: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHS 100
+ ++ + + S +TEM +++ S
Sbjct: 58 MRTGGTIKGSKVTLLLSSKTEMQNMIELS 86
Score = 46.6 bits (109), Expect = 4e-05
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
++++ +PF + +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
Query: 173 KER-IGHRYIEV 183
+R IG R +++
Sbjct: 918 NDRPIGSRKVKL 929
Score = 45.8 bits (107), Expect = 7e-05
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
V + G+P+ A END+ +FF L VH+ GR G V+F + ++ A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 351 NMQHRYIEL 359
M RY+E+
Sbjct: 366 LMIQRYVEV 374
Score = 42.4 bits (98), Expect = 8e-04
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
+D +V + G+PF + ++ FF GL + + + L D G+ G V+F S + +A
Sbjct: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 169 LGKHKERIGHRYIEVFKSSQEE 190
L +++ + RY+EV +++ +
Sbjct: 360 LKRNRMLMIQRYVEVSPATERQ 381
Score = 38.1 bits (87), Expect = 0.015
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
+RL+GLP +I FFSGL I G+ + G GEAF+ FA+ E A + +
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHI----VGGELGEAFIVFATDEDARLGMMRT 60
Query: 173 KERIGHRYIEVFKSSQEEVRS 193
I + + SS+ E+++
Sbjct: 61 GGTIKGSKVTLLLSSKTEMQN 81
Score = 36.6 bits (83), Expect = 0.043
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEEAVAA 344
+ ++GLP A DI +FFS L PDG V GEA + FAT E+A
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
Query: 345 MSKDRANMQHRYIELFLNSTTGASN 369
M + ++ + L L+S T N
Sbjct: 57 MMRTGGTIKGSKVTLLLSSKTEMQN 81
Score = 36.2 bits (82), Expect = 0.056
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 290 CVHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F ++A +
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 348 DRANMQHRYIELFLNSTT 365
R + R E F++ T
Sbjct: 605 HRKKLNGR--EAFVHVVT 620
Score = 30.4 bits (67), Expect = 3.1
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 291 VHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
+ ++ +P+ + ++I +FF P V ++ G TGEA V F + +EA AA+
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 914
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 90.1 bits (222), Expect = 3e-18
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 38/211 (18%)
Query: 5 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE 64
P + V + G+P+S DV++F + VH + GR +G V+ S
Sbjct: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSP 353
Query: 65 DDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL--------KHSGPN------------- 103
D ALK++R M RY+EV S TE WV ++ GP+
Sbjct: 354 QDTFEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRS 411
Query: 104 ----------SADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
S GF V L+GLPF + ++ FF L+IV + I + P GK T
Sbjct: 412 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471
Query: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEV 183
GE FV+F ++ + AL +HK+ +G+R+I+V
Sbjct: 472 GEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502
Score = 84.3 bits (207), Expect = 2e-16
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 22/225 (9%)
Query: 10 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
GF V L+GLP+ + V +F I + + ++ Y G+ +GE FVE +E D K
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDS--IYIAYGPNGKATGEGFVEFRNEADYKA 486
Query: 70 ALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSGPNSADSAN-----DGFVR------ 114
AL + ++ MG+R+I+V K ++D + K S D +G V
Sbjct: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
Query: 115 -LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
+ +PF TK +++QF G+ + N + + VD G+ G+A VQF +++ A K+ H+
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
Query: 174 ERIGHRYIEVFKSSQEEVRSY-SDPPL---KFMSVQRPGPYDRPG 214
+++ R V + E++R +PP K + + PG PG
Sbjct: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
Score = 56.6 bits (135), Expect = 4e-08
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 288 GHCVHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
G CV+++GLP++A + +FF L+ V ++I GP+G+ TGE VEF + AA+
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
Query: 346 SKDRANMQHRYIEL 359
+ + M +R+I++
Sbjct: 489 CRHKQYMGNRFIQV 502
Score = 47.4 bits (111), Expect = 2e-05
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
V++L+GLP D+++F S TI DG GVH + G + GEAF+ +++D ++ +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
Query: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHS 100
+ ++ + + S +TEM +++ S
Sbjct: 58 MRTGGTIKGSKVTLLLSSKTEMQNMIELS 86
Score = 46.6 bits (109), Expect = 4e-05
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
++++ +PF + +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
Query: 173 KER-IGHRYIEV 183
+R IG R +++
Sbjct: 918 NDRPIGSRKVKL 929
Score = 45.8 bits (107), Expect = 7e-05
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
V + G+P+ A END+ +FF L VH+ GR G V+F + ++ A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 351 NMQHRYIEL 359
M RY+E+
Sbjct: 366 LMIQRYVEV 374
Score = 42.4 bits (98), Expect = 8e-04
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
+D +V + G+PF + ++ FF GL + + + L D G+ G V+F S + +A
Sbjct: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 169 LGKHKERIGHRYIEVFKSSQEE 190
L +++ + RY+EV +++ +
Sbjct: 360 LKRNRMLMIQRYVEVSPATERQ 381
Score = 38.1 bits (87), Expect = 0.015
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
+RL+GLP +I FFSGL I G+ + G GEAF+ FA+ E A + +
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHI----VGGELGEAFIVFATDEDARLGMMRT 60
Query: 173 KERIGHRYIEVFKSSQEEVRS 193
I + + SS+ E+++
Sbjct: 61 GGTIKGSKVTLLLSSKTEMQN 81
Score = 36.6 bits (83), Expect = 0.043
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEEAVAA 344
+ ++GLP A DI +FFS L PDG V GEA + FAT E+A
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
Query: 345 MSKDRANMQHRYIELFLNSTTGASN 369
M + ++ + L L+S T N
Sbjct: 57 MMRTGGTIKGSKVTLLLSSKTEMQN 81
Score = 36.2 bits (82), Expect = 0.056
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 290 CVHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F ++A +
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 348 DRANMQHRYIELFLNSTT 365
R + R E F++ T
Sbjct: 605 HRKKLNGR--EAFVHVVT 620
Score = 30.4 bits (67), Expect = 3.1
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 291 VHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
+ ++ +P+ + ++I +FF P V ++ G TGEA V F + +EA AA+
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 914
>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
Length = 1001
Score = 73.6 bits (179), Expect = 3e-13
Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 26/251 (10%)
Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
+RL GLPF +I FF+GL I G+ + G GEAF+ FA+ E A +A+ +
Sbjct: 5 IRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISRS 60
Query: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
I +E+F SS+ E++ ++ R G RPG+ + + +E ++
Sbjct: 61 GGFIKDSSVELFLSSKAEMQK----TIEMKRTDRVGR-GRPGSGTSGVDSLSNF-IESVK 114
Query: 233 PGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
A ++GYG S ++ GF T+ G + +
Sbjct: 115 EEASNSGYG-----SSINQDAGFHTNGTGHG-----------NLRPRKTRPLKAENPYLF 158
Query: 293 MRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANM 352
+RGLPY E+D+ FFS L V DGR G+A V+FA+ +A + R+ M
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 218
Query: 353 QHRYIELFLNS 363
R+IE+ S
Sbjct: 219 GSRFIEVMQGS 229
Score = 70.5 bits (171), Expect = 3e-12
Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 66/237 (27%)
Query: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
V++L GLP+ D+++F + TI DG GVH I G + GEAF+ +++D + A+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG--GVHII----GGEIGEAFIIFATDEDARRAI 57
Query: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGPNSADS------------ 107
+ + +E+F S + EM ++ SG + DS
Sbjct: 58 SRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEA 117
Query: 108 ----------------------------------ANDGFVRLRGLPFGCTKEEIVQFFSG 133
A + ++ LRGLP+ ++++ FFSG
Sbjct: 118 SNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSG 177
Query: 134 LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
L + +G+ +G+ G+A V+FAS A L H+ +G R+IEV + S+++
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQ 232
Score = 68.9 bits (167), Expect = 8e-12
Identities = 98/432 (22%), Positives = 158/432 (36%), Gaps = 110/432 (25%)
Query: 15 LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKD 74
LRGLP+ + +DV+ F S + GV F+ +GR +G+A V+ S D LK
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVD----GVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 75 RESMGHRYIEVFKSHRTEMDWV----------------LKHSGPNSAD------------ 106
R MG R+IEV + +E W+ +HS P +
Sbjct: 215 RSFMGSRFIEVMQG--SEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKS 272
Query: 107 -------SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQF 159
S +V L+ L + ++ FF G ++ I E + T AFV F
Sbjct: 273 PRRTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMF 331
Query: 160 ASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRY 219
+ + AL HK + +R + + S++++ LKF++ Y++
Sbjct: 332 KTLKDYNTALSLHKTVLQYRPVHIDPISRKQM-------LKFIA-----RYEKK------ 373
Query: 220 IGIVKQAGLERMRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDS 279
+ LER RPG S Y E SG
Sbjct: 374 ----RSGSLERDRPGHVSQKY-SQEGNSGQK----------------------------- 399
Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFAT 337
C+++R P+ T+ ++ FF+ L +++ G GEA V+F +
Sbjct: 400 ---------LCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKS 450
Query: 338 HEEAVAAMSKDRANMQHRYIELFLNSTT-----GASNGAYSSQVMQGMGVSAAQATYSGL 392
E+A+ A +R + L L S G + SS+ MQ S + +S L
Sbjct: 451 EEQAMKAERLNRRRFLGTEVLLRLISEAQIQEFGVNFSVMSSEKMQARSQSRERGDHSHL 510
Query: 393 ESQSVSGCYGAG 404
Y G
Sbjct: 511 FDSKDPPIYSVG 522
Score = 56.2 bits (134), Expect = 5e-08
Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 22/185 (11%)
Query: 10 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
GF V L+ L S D++NF + D + F+Y E R + AFV + D
Sbjct: 283 GFYVHLKNLSLSIDERDLRNFFRGTDLTDEQ--IRFLYKDENR-TRYAFVMFKTLKDYNT 339
Query: 70 ALKKDRESMGHRYIEVFKSHRTEM-----DWVLKHSGPNSAD-----------SANDG-- 111
AL + + +R + + R +M + K SG D N G
Sbjct: 340 ALSLHKTVLQYRPVHIDPISRKQMLKFIARYEKKRSGSLERDRPGHVSQKYSQEGNSGQK 399
Query: 112 -FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
+ +R PF TK E+ +FF+ + + I L D +G GEA V+F S+E A KA
Sbjct: 400 LCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAER 459
Query: 171 KHKER 175
++ R
Sbjct: 460 LNRRR 464
Score = 42.0 bits (97), Expect = 0.001
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
+++ LPF EI+ FF G I+P+ +++ + +G TGEA V + A A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 173 KER-IGHRYIEV 183
+R +G R +++
Sbjct: 987 NDRPVGPRKVKL 998
Score = 36.2 bits (82), Expect = 0.056
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 291 VHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
+ + LP+KA N+I +FF + P V I+ G TGEA V + EA+AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAI 983
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 71.6 bits (174), Expect = 1e-12
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
VKLRG P++ + ++V FL+ + + G ++G FV+ +E++VK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 73 KDRESMGHRYIEVFKS----------HRTEMDWVLKHSGPN--SADSANDGFVRLRGLPF 120
+RE MG RYIEVF+ T W + G N D A G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDP-EGKITGEAFVQFASQELAEKA 168
T+E++ + FS + + + P+D K G AF+ F E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Score = 63.2 bits (152), Expect = 4e-10
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 284 QSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVA 343
+ TT H V +RG P+ TE ++ F +PL PV + I G TG V+F+ EE
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348
Query: 344 AMSKDRANMQHRYIELFLNSTTGASNGA 371
A+ +R M RYIE+F + GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376
Score = 53.9 bits (128), Expect = 3e-07
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
V+LRG PF T++ +++F + L+ P I + + G TG FV F+++E ++AL +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 173 KERIGHRYIEVFK 185
+E +G RYIEVF+
Sbjct: 354 REYMGGRYIEVFR 366
Score = 32.3 bits (72), Expect = 0.81
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 115 LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKE 174
++ LP G +E Q F+ + + +L +GK F+ F S+E A+KA ++
Sbjct: 6 VKNLPNGMKEERFRQLFAAFGTLTD-CSLKFTKDGKFRKFGFIGFKSEEEAQKA----QK 60
Query: 175 RIGHRYIEVFKSSQEEVRSYSDP 197
+I+ + + E +S+ DP
Sbjct: 61 HFNKSFIDTSRITVEFCKSFGDP 83
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 71.6 bits (174), Expect = 1e-12
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
VKLRG P++ + ++V FL+ + + G ++G FV+ +E++VK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 73 KDRESMGHRYIEVFKS----------HRTEMDWVLKHSGPN--SADSANDGFVRLRGLPF 120
+RE MG RYIEVF+ T W + G N D A G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDP-EGKITGEAFVQFASQELAEKA 168
T+E++ + FS + + + P+D K G AF+ F E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Score = 63.2 bits (152), Expect = 4e-10
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 284 QSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVA 343
+ TT H V +RG P+ TE ++ F +PL PV + I G TG V+F+ EE
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348
Query: 344 AMSKDRANMQHRYIELFLNSTTGASNGA 371
A+ +R M RYIE+F + GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376
Score = 53.9 bits (128), Expect = 3e-07
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
V+LRG PF T++ +++F + L+ P I + + G TG FV F+++E ++AL +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 173 KERIGHRYIEVFK 185
+E +G RYIEVF+
Sbjct: 354 REYMGGRYIEVFR 366
Score = 32.3 bits (72), Expect = 0.81
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 115 LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKE 174
++ LP G +E Q F+ + + +L +GK F+ F S+E A+KA ++
Sbjct: 6 VKNLPNGMKEERFRQLFAAFGTLTD-CSLKFTKDGKFRKFGFIGFKSEEEAQKA----QK 60
Query: 175 RIGHRYIEVFKSSQEEVRSYSDP 197
+I+ + + E +S+ DP
Sbjct: 61 HFNKSFIDTSRITVEFCKSFGDP 83
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 71.6 bits (174), Expect = 1e-12
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
VKLRG P++ + ++V FL+ + + G ++G FV+ +E++VK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 73 KDRESMGHRYIEVFKS----------HRTEMDWVLKHSGPN--SADSANDGFVRLRGLPF 120
+RE MG RYIEVF+ T W + G N D A G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDP-EGKITGEAFVQFASQELAEKA 168
T+E++ + FS + + + P+D K G AF+ F E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Score = 63.2 bits (152), Expect = 4e-10
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 284 QSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVA 343
+ TT H V +RG P+ TE ++ F +PL PV + I G TG V+F+ EE
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348
Query: 344 AMSKDRANMQHRYIELFLNSTTGASNGA 371
A+ +R M RYIE+F + GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376
Score = 53.9 bits (128), Expect = 3e-07
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
V+LRG PF T++ +++F + L+ P I + + G TG FV F+++E ++AL +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 173 KERIGHRYIEVFK 185
+E +G RYIEVF+
Sbjct: 354 REYMGGRYIEVFR 366
Score = 32.3 bits (72), Expect = 0.81
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 115 LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKE 174
++ LP G +E Q F+ + + +L +GK F+ F S+E A+KA ++
Sbjct: 6 VKNLPNGMKEERFRQLFAAFGTLTD-CSLKFTKDGKFRKFGFIGFKSEEEAQKA----QK 60
Query: 175 RIGHRYIEVFKSSQEEVRSYSDP 197
+I+ + + E +S+ DP
Sbjct: 61 HFNKSFIDTSRITVEFCKSFGDP 83
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 45.4 bits (106), Expect = 9e-05
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 16 RGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KD 74
+ LP+ + ++++ D AA + + +++G+ G A++E +E D + + K
Sbjct: 398 KNLPYKVTQDELKEVFED------AAEIRLV-SKDGKSKGIAYIEFKTEADAEKTFEEKQ 450
Query: 75 RESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGL 134
+ R I ++ + + + G NS S + L L + T+E + + F
Sbjct: 451 GTEIDGRSISLYYTGEKGQNQDYR-GGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 509
Query: 135 EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKER 175
I +P + GK G AF++FAS E A++AL +R
Sbjct: 510 TF----IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 546
Score = 36.2 bits (82), Expect = 0.056
Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 39/222 (17%)
Query: 159 FASQELAEKALGKH--KERIGHRYIEV---FKSSQEEVRSYSDPPLKFMSVQRPGPYDRP 213
F ++ EK GK KER + +K +Q+E++ + + V + G
Sbjct: 372 FGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGK--SK 429
Query: 214 GTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGM-- 271
G A YI +A E+ +EE G T++ GR +S +G
Sbjct: 430 GIA--YIEFKTEADAEKT-----------FEEKQG--------TEIDGRSISLYYTGEKG 468
Query: 272 --YDHRYG-DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
D+R G +S ++ +S T + + L Y ATE + F ++V +G+
Sbjct: 469 QNQDYRGGKNSTWSGESKT---LVLSNLSYSATEETLQEVFEKATFIKV--PQNQNGKSK 523
Query: 329 GEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGASN 369
G A +EFA+ E+A A+ S ++ ++ R I L L G+ N
Sbjct: 524 GYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 565
Score = 33.9 bits (76), Expect = 0.28
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 294 RGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM 352
+ LPYK T++++ F +R+ + DG+ G A +EF T +A K +
Sbjct: 398 KNLPYKVTQDELKEVFEDAAEIRL---VSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 454
Query: 353 QHRYIELFLNSTTGAS-----------NGAYSSQVMQGMGVSAAQAT 388
R I L+ G + +G + V+ + SA + T
Sbjct: 455 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET 501
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 41.6 bits (96), Expect = 0.001
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 46 IYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSG 101
I++ G G +VE E AL+ DR+S+ R + V KS + V ++S
Sbjct: 738 IFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFK-VFRYS- 795
Query: 102 PNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFAS 161
S + + GLPF CTKEE+ + V + + L + GK G A+V++ +
Sbjct: 796 ----TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKD-LRLVTNRAGKPKGLAYVEYEN 850
Query: 162 QELAEKALGK 171
+ A +A+ K
Sbjct: 851 ESQASQAVMK 860
Score = 35.8 bits (81), Expect = 0.073
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 15 LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKK 73
+ GLP+SC+ E+++ C H + + R G+ G A+VE +E A+ K
Sbjct: 805 ISGLPFSCTKEELEEI---CKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 860
>gi|50053795 eukaryotic translation initiation factor 4B [Homo
sapiens]
Length = 611
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 115 LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEG--KITGEAFVQFASQELAEKALGKH 172
L LP+ T+E I +FF GL I + + LP +P ++ G + +F + AL +
Sbjct: 100 LGNLPYDVTEESIKEFFRGLNI--SAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLN 157
Query: 173 KERIGHRYIEVFKSSQEEVRSYSD 196
+E +G+R I V + Q + + D
Sbjct: 158 EESLGNRRIRVDVADQAQDKDRDD 181
Score = 30.8 bits (68), Expect = 2.4
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 296 LPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQ 353
LPY TE I FF LN VR+ E R+ G EF + ++A+S + ++
Sbjct: 103 LPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG 162
Query: 354 HRYIEL 359
+R I +
Sbjct: 163 NRRIRV 168
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 40.4 bits (93), Expect = 0.003
Identities = 61/265 (23%), Positives = 96/265 (36%), Gaps = 46/265 (17%)
Query: 17 GLPWSCSVEDVQNFLS------DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
GL W S +D+ +LS DCTI GR G FV V
Sbjct: 154 GLSWDTSKKDLTEYLSRFGEVVDCTIKTDPV--------TGRSRGFGFVLFKDAASVDKV 205
Query: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130
L+ + + I+ ++ LK P V + GL ++E+I ++
Sbjct: 206 LELKEHKLDGKLIDPKRAK------ALKGKEPPKK-------VFVGGLSPDTSEEQIKEY 252
Query: 131 FSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 189
F + N I LP+D + + G F+ + +E +K L +IG E+ + +
Sbjct: 253 FGAFGEIEN-IELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Query: 190 EVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGL 249
EV K G R GT G R + ++ G+ Y +
Sbjct: 312 EVYRQQQQQQKGGRGAAAG--GRGGTR----------GRGRGQGQNWNQGFNNYYD---- 355
Query: 250 SDGYGFTTDLFGRDLSYCLSGMYDH 274
GYG +G D +Y G YD+
Sbjct: 356 -QGYGNYNSAYGGDQNYSGYGGYDY 379
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 40.4 bits (93), Expect = 0.003
Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 43/242 (17%)
Query: 17 GLPWSCSVEDVQNFLS------DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
GL WS + E ++++ S DC I T + R G FV+ + V
Sbjct: 16 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKT------TNQSR--GFGFVKFKDPNCVGTV 67
Query: 71 LKKDRESMGHRYIEVF---------KSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFG 121
L ++ R I+ + R + W GP S D++ + + G+P
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW---QKGPRS-DNSKSNKIFVGGIPHN 123
Query: 122 CTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181
C + E+ ++F +V + + + + G F+ F ++ ++A+ H I + +
Sbjct: 124 CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKV 183
Query: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQA--GLERMRPGAYSTG 239
EV ++ + +S Q PG +PG ++ +V A G P + G
Sbjct: 184 EVKRAEPRDSKS-----------QAPG---QPGASQWGSRVVPNAANGWAGQPPPTWQQG 229
Query: 240 YG 241
YG
Sbjct: 230 YG 231
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,731,146
Number of Sequences: 37866
Number of extensions: 777754
Number of successful extensions: 2302
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1831
Number of HSP's gapped (non-prelim): 247
length of query: 415
length of database: 18,247,518
effective HSP length: 105
effective length of query: 310
effective length of database: 14,271,588
effective search space: 4424192280
effective search space used: 4424192280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.