Guide to the Human Genome
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Search of human proteins with 4826760

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
         (415 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sap...   852   0.0  
gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sap...   852   0.0  
gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sap...   852   0.0  
gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sap...   852   0.0  
gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sap...   852   0.0  
gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]   852   0.0  
gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapi...   662   0.0  
gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sap...   646   0.0  
gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapi...   646   0.0  
gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a...   353   1e-97
gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b...   340   1e-93
gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Hom...   266   2e-71
gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Hom...   245   5e-65
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]   126   3e-29
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]   126   3e-29
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]   126   3e-29
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]   126   3e-29
gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]    126   3e-29
gi|45935393 RNA binding motif protein 35B [Homo sapiens]              109   4e-24
gi|19923345 RNA binding motif protein 12 [Homo sapiens]                90   3e-18
gi|23510462 RNA binding motif protein 12 [Homo sapiens]                90   3e-18
gi|118722349 RNA binding motif protein 12B [Homo sapiens]              74   3e-13
gi|226497734 RNA binding motif protein 19 [Homo sapiens]               72   1e-12
gi|226497654 RNA binding motif protein 19 [Homo sapiens]               72   1e-12
gi|226497574 RNA binding motif protein 19 [Homo sapiens]               72   1e-12
gi|55956788 nucleolin [Homo sapiens]                                   45   9e-05
gi|7661952 squamous cell carcinoma antigen recognized by T cells...    42   0.001
gi|50053795 eukaryotic translation initiation factor 4B [Homo sa...    41   0.002
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...    40   0.003
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]          40   0.003

>gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  852 bits (2202), Expect = 0.0
 Identities = 415/415 (100%), Positives = 415/415 (100%)

Query: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
           MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60

Query: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
           LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
           GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180

Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
           IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240

Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
           GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
           TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
           LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415


>gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  852 bits (2202), Expect = 0.0
 Identities = 415/415 (100%), Positives = 415/415 (100%)

Query: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
           MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60

Query: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
           LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
           GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180

Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
           IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240

Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
           GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
           TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
           LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415


>gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  852 bits (2202), Expect = 0.0
 Identities = 415/415 (100%), Positives = 415/415 (100%)

Query: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
           MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60

Query: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
           LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
           GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180

Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
           IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240

Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
           GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
           TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
           LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415


>gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  852 bits (2202), Expect = 0.0
 Identities = 415/415 (100%), Positives = 415/415 (100%)

Query: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
           MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60

Query: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
           LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
           GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180

Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
           IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240

Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
           GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
           TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
           LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415


>gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  852 bits (2202), Expect = 0.0
 Identities = 415/415 (100%), Positives = 415/415 (100%)

Query: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
           MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60

Query: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
           LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
           GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180

Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
           IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240

Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
           GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
           TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
           LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415


>gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
          Length = 415

 Score =  852 bits (2202), Expect = 0.0
 Identities = 415/415 (100%), Positives = 415/415 (100%)

Query: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
           MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
Sbjct: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60

Query: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
           LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
Sbjct: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
           GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180

Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
           IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240

Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
           GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
           TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415
           LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
Sbjct: 361 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD 415


>gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo
           sapiens]
          Length = 449

 Score =  662 bits (1707), Expect = 0.0
 Identities = 322/435 (74%), Positives = 361/435 (82%), Gaps = 21/435 (4%)

Query: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
           MMLG EGGEGFVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVE
Sbjct: 1   MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60

Query: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
           L SED+VK+ALKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61  LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
           GC+KEEIVQFFSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180

Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
           IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GAY  GY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240

Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
           GGY++Y+G +DGYGF +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300

Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQ------- 353
           TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQ       
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360

Query: 354 -------------HRYIELFLNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
                        HRY+ELFLNST GAS GAY SQ+M GMG+S  Q++Y G  SQ +SG 
Sbjct: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419

Query: 401 YGAGYSGQNSMGGYD 415
           YG GY GQ+SM GYD
Sbjct: 420 YGGGYGGQSSMSGYD 434


>gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo
           sapiens]
          Length = 449

 Score =  646 bits (1667), Expect = 0.0
 Identities = 313/435 (71%), Positives = 357/435 (82%), Gaps = 21/435 (4%)

Query: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
           MML  EG EGFVVK+RGLPWSCS ++V  F SDC I +G +G+ FIYTREGR SGEAFVE
Sbjct: 1   MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60

Query: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
           L SE++VK+ALKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61  LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
           GC+KEEIVQFFSGLEIVPNG+TLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180

Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
           IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GAY  GY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240

Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
           GGY++Y G +DGYGF +D FGRDL+YC SGM DHRYGD   + QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300

Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHR----- 355
           TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHE+AVAAM+KD+ANMQHR     
Sbjct: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360

Query: 356 ---------------YIELFLNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
                          Y+ELFLNST GAS GAY SQ+M GMG+S  Q++Y G  SQ +SG 
Sbjct: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419

Query: 401 YGAGYSGQNSMGGYD 415
           YG GY GQ+SM GYD
Sbjct: 420 YGGGYGGQSSMSGYD 434


>gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo
           sapiens]
          Length = 449

 Score =  646 bits (1667), Expect = 0.0
 Identities = 313/435 (71%), Positives = 357/435 (82%), Gaps = 21/435 (4%)

Query: 1   MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
           MML  EG EGFVVK+RGLPWSCS ++V  F SDC I +G +G+ FIYTREGR SGEAFVE
Sbjct: 1   MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60

Query: 61  LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
           L SE++VK+ALKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61  LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
           GC+KEEIVQFFSGLEIVPNG+TLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180

Query: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
           IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GAY  GY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240

Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
           GGY++Y G +DGYGF +D FGRDL+YC SGM DHRYGD   + QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300

Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHR----- 355
           TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHE+AVAAM+KD+ANMQHR     
Sbjct: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360

Query: 356 ---------------YIELFLNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
                          Y+ELFLNST GAS GAY SQ+M GMG+S  Q++Y G  SQ +SG 
Sbjct: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419

Query: 401 YGAGYSGQNSMGGYD 415
           YG GY GQ+SM GYD
Sbjct: 420 YGGGYGGQSSMSGYD 434


>gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a
           [Homo sapiens]
          Length = 346

 Score =  353 bits (907), Expect = 1e-97
 Identities = 190/328 (57%), Positives = 230/328 (70%), Gaps = 13/328 (3%)

Query: 93  MDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
           MDWV+KH+GPN A   +DG VRLRGLPFGC+KEEIVQFF GLEIVPNGITL +D +G+ T
Sbjct: 1   MDWVMKHNGPNDA---SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57

Query: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDR 212
           GEAFVQFAS+E+AE ALGKHKERIGHRYIE+F+SS+ E++ + DPP + +  QRPGPYDR
Sbjct: 58  GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116

Query: 213 P-GTARRYIGIVKQAGLERMRPG--AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLS 269
           P G    Y G  + +  +RMR G   Y  GYGG+++Y G ++ YG+  D F  D      
Sbjct: 117 PIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNN-YGYGNDGFD-DRMRDGR 174

Query: 270 GMYDHRYGDS-EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
           GM  H YG + + +     GH VHMRGLP++ATENDI NFFSPLNP+RVHI+IG DGR T
Sbjct: 175 GMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 234

Query: 329 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSAA--Q 386
           GEADVEF THE+AVAAMSKD+ NMQHRYIELFLNST G  +G   S  M G G      Q
Sbjct: 235 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSG-MGGYGRDGMDNQ 293

Query: 387 ATYSGLESQSVSGCYGAGYSGQNSMGGY 414
             Y  +    +   Y  GY   + +GGY
Sbjct: 294 GGYGSVGRMGMGNNYSGGYGTPDGLGGY 321



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 4  GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGS 63
          GP       V+LRGLP+ CS E++  F     I     G+      +GR +GEAFV+  S
Sbjct: 9  GPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPN--GITLTMDYQGRSTGEAFVQFAS 66

Query: 64 EDDVKMALKKDRESMGHRYIEVFKSHRTEM 93
          ++  + AL K +E +GHRYIE+F+S R+E+
Sbjct: 67 KEIAENALGKHKERIGHRYIEIFRSSRSEI 96



 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 15/140 (10%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEEAVAAMSKD 348
           V +RGLP+  ++ +I  FF  L  V   I +  D  GR TGEA V+FA+ E A  A+ K 
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77

Query: 349 RANMQHRYIELFLNSTT-------------GASNGAYSSQVMQGMGVSAAQATYSGLESQ 395
           +  + HRYIE+F +S +             G   G Y   +    G   A         +
Sbjct: 78  KERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDRMR 137

Query: 396 SVSGCYGAGYSGQNSMGGYD 415
                Y  GY G +  GGY+
Sbjct: 138 RGGDGYDGGYGGFDDYGGYN 157



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 10  GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
           G  V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 194 GHFVHMRGLPFRATENDIANFFSPLN----PIRVHIDIGADGRATGEADVEFVTHEDAVA 249

Query: 70  ALKKDRESMGHRYIEVF 86
           A+ KD+ +M HRYIE+F
Sbjct: 250 AMSKDKNNMQHRYIELF 266


>gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b
           [Homo sapiens]
          Length = 331

 Score =  340 bits (872), Expect = 1e-93
 Identities = 187/328 (57%), Positives = 224/328 (68%), Gaps = 28/328 (8%)

Query: 93  MDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
           MDWV+KH+GPN A   +DG VRLRGLPFGC+KEEIVQFF GLEIVPNGITL +D +G+ T
Sbjct: 1   MDWVMKHNGPNDA---SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57

Query: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDR 212
           GEAFVQFAS+E+AE ALGKHKERIGHRYIE+F+SS+ E++ + DPP + +  QRPGPYDR
Sbjct: 58  GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116

Query: 213 PGTARRYIGIVKQAGLERMRPGAYSTG---YGGYEEYSGLSDGYGFTTDLFGRDLSYCLS 269
           P      IG          R G Y  G   YGG+++Y G ++ YG+  D F  D      
Sbjct: 117 P------IG---------GRGGYYGAGRGSYGGFDDYGGYNN-YGYGNDGFD-DRMRDGR 159

Query: 270 GMYDHRYGDS-EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
           GM  H YG + + +     GH VHMRGLP++ATENDI NFFSPLNP+RVHI+IG DGR T
Sbjct: 160 GMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 219

Query: 329 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSAA--Q 386
           GEADVEF THE+AVAAMSKD+ NMQHRYIELFLNST G  +G   S  M G G      Q
Sbjct: 220 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSG-MGGYGRDGMDNQ 278

Query: 387 ATYSGLESQSVSGCYGAGYSGQNSMGGY 414
             Y  +    +   Y  GY   + +GGY
Sbjct: 279 GGYGSVGRMGMGNNYSGGYGTPDGLGGY 306



 Score =  113 bits (282), Expect = 4e-25
 Identities = 94/319 (29%), Positives = 130/319 (40%), Gaps = 80/319 (25%)

Query: 4   GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGS 63
           GP       V+LRGLP+ CS E++  F     I     G+      +GR +GEAFV+  S
Sbjct: 9   GPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPN--GITLTMDYQGRSTGEAFVQFAS 66

Query: 64  EDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL-------------------------- 97
           ++  + AL K +E +GHRYIE+F+S R+E+                              
Sbjct: 67  KEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYG 126

Query: 98  ----------KHSGPNSADSANDGF------------------------------VRLRG 117
                      + G N+    NDGF                              V +RG
Sbjct: 127 AGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRG 186

Query: 118 LPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIG 177
           LPF  T+ +I  FFS L   P  + + +  +G+ TGEA V+F + E A  A+ K K  + 
Sbjct: 187 LPFRATENDIANFFSPLN--PIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQ 244

Query: 178 HRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARR-YIGIVKQAGLERMRPGAY 236
           HRYIE+F +S     S        M     G Y R G   +   G V + G+     G Y
Sbjct: 245 HRYIELFLNSTPGGGS-------GMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGY 297

Query: 237 ST--GYGGYEEYSGLSDGY 253
            T  G GGY    G S GY
Sbjct: 298 GTPDGLGGYGRGGGGSGGY 316


>gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Homo
           sapiens]
          Length = 480

 Score =  266 bits (681), Expect = 2e-71
 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%)

Query: 3   LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62
           L  E  + F+++ +GLPWSC++EDV NF SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201

Query: 63  SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122
           SE DV+ AL+K R  MG RY+EV++ +  ++D ++K     S+   NDG VRLRGLP+ C
Sbjct: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261

Query: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181
            +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319

Query: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240
           E+F S + EVR+                         ++G  K   +       Y T   
Sbjct: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354

Query: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
             +EE+    D    T   F  +    L      +  ++     +++ H VHMRGLP++A
Sbjct: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412

Query: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
              DI NFF+PL PVR+ +E    G+ TGEADV F THE+AVAAM KDR+++ HRYIELF
Sbjct: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472

Query: 361 LNS 363
           LNS
Sbjct: 473 LNS 475


>gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Homo
           sapiens]
          Length = 318

 Score =  245 bits (626), Expect = 5e-65
 Identities = 142/342 (41%), Positives = 200/342 (58%), Gaps = 31/342 (9%)

Query: 24  VEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 83
           +EDV NF SDC I +G  G+HF+  R+G++ G+A +E+ SE DV+ AL+K R  MG RY+
Sbjct: 1   MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60

Query: 84  EVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL 143
           EV++ +  ++D ++K     S+   NDG VRLRGLP+ C +++IV FF+GL IV   IT 
Sbjct: 61  EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITF 118

Query: 144 PVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM 202
            +D  G + TGEA+VQF   E+A +AL KH+E IG+RYIE+F S + EVR+         
Sbjct: 119 VMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT--------- 169

Query: 203 SVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GYGGYEEYSGLSDGYGFTTDLFG 261
                           ++G  K   +       Y T     +EE+    D    T   F 
Sbjct: 170 ----------------HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTA--FE 211

Query: 262 RDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
            +    L      +  ++     +++ H VHMRGLP++A   DI NFF+PL PVR+ +E 
Sbjct: 212 SEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEY 271

Query: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 363
              G+ TGEADV F THE+AVAAM KDR+++ HRYIELFLNS
Sbjct: 272 SSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313



 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG-RQSGEAFVELGSEDDVKMA 70
           VV+LRGLP+SC+ +D+ +F +   I D    + F+    G R++GEA+V+    +    A
Sbjct: 89  VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144

Query: 71  LKKDRESMGHRYIEVFKSHRTEM 93
           L K RE +G+RYIE+F S R E+
Sbjct: 145 LLKHREEIGNRYIEIFPSRRNEV 167



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 13  VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
           V +RGLP+  + +D+ NF +          +   Y+  G+ +GEA V   + +D   A+ 
Sbjct: 241 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 296

Query: 73  KDRESMGHRYIEVF 86
           KDR  + HRYIE+F
Sbjct: 297 KDRSHVHHRYIELF 310


>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
          Length = 604

 Score =  126 bits (317), Expect = 3e-29
 Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
           VV+ RGLPW  S +D+  F     I  G A +      +GR++GEA V   SE+   +AL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283

Query: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
           ++ +  MG RYIEV+K+   +    LK +G  S + A      N   VR+RGLPF  T E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340

Query: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
           E+V FF     +     GI     P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400

Query: 183 VFKSSQEEVRS----YSDPPL 199
           +F+S+  EV+     +S  PL
Sbjct: 401 LFRSTAAEVQQVLNRFSSAPL 421



 Score =  103 bits (257), Expect = 3e-22
 Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 22/202 (10%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
           +V++RGLP++ + E+V  F    C I  G  G+ F+   +GR +G+AFV    E+  + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
           L+K ++ +G RYIE+F+S   E+  VL             P         FV        
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446

Query: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
            RLRGLP+  T E+I+ F      +I  +G+ + ++ +G+ +G+AF+Q  S + A  A  
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 171 K-HKERIGHRYIEVFKSSQEEV 191
           K HK+ +  RY+EVF+ S EE+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528



 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 13  VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
           ++LRGLP++ ++ED+ +FL +        GVH +   +GR SG+AF+++ S D   MA +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 73  K-DRESMGHRYIEVFKSHRTEMDWVL 97
           K  +++M  RY+EVF+    EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
           A  T Y  +E+ S +S       +  G  +   +S  Y+HR+ D E    +  +G C   
Sbjct: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218

Query: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
                   V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E 
Sbjct: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278

Query: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
              A+ + + +M  RYIE+       FL    G SN
Sbjct: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387

Query: 346 SKDRANMQHRYIELF 360
            K +  +  RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
           +F   +    C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++ 
Sbjct: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495

Query: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
            + + A +AA    + NM+ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521


>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
          Length = 659

 Score =  126 bits (317), Expect = 3e-29
 Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
           VV+ RGLPW  S +D+  F     I  G A +      +GR++GEA V   SE+   +AL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283

Query: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
           ++ +  MG RYIEV+K+   +    LK +G  S + A      N   VR+RGLPF  T E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340

Query: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
           E+V FF     +     GI     P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400

Query: 183 VFKSSQEEVRS----YSDPPL 199
           +F+S+  EV+     +S  PL
Sbjct: 401 LFRSTAAEVQQVLNRFSSAPL 421



 Score =  103 bits (257), Expect = 3e-22
 Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 22/202 (10%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
           +V++RGLP++ + E+V  F    C I  G  G+ F+   +GR +G+AFV    E+  + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
           L+K ++ +G RYIE+F+S   E+  VL             P         FV        
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446

Query: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
            RLRGLP+  T E+I+ F      +I  +G+ + ++ +G+ +G+AF+Q  S + A  A  
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 171 K-HKERIGHRYIEVFKSSQEEV 191
           K HK+ +  RY+EVF+ S EE+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528



 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 13  VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
           ++LRGLP++ ++ED+ +FL +        GVH +   +GR SG+AF+++ S D   MA +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 73  K-DRESMGHRYIEVFKSHRTEMDWVL 97
           K  +++M  RY+EVF+    EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
           A  T Y  +E+ S +S       +  G  +   +S  Y+HR+ D E    +  +G C   
Sbjct: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218

Query: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
                   V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E 
Sbjct: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278

Query: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
              A+ + + +M  RYIE+       FL    G SN
Sbjct: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387

Query: 346 SKDRANMQHRYIELF 360
            K +  +  RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
           +F   +    C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++ 
Sbjct: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495

Query: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
            + + A +AA    + NM+ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521


>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
          Length = 608

 Score =  126 bits (317), Expect = 3e-29
 Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
           VV+ RGLPW  S +D+  F     I  G A +      +GR++GEA V   SE+   +AL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283

Query: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
           ++ +  MG RYIEV+K+   +    LK +G  S + A      N   VR+RGLPF  T E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340

Query: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
           E+V FF     +     GI     P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400

Query: 183 VFKSSQEEVRS----YSDPPL 199
           +F+S+  EV+     +S  PL
Sbjct: 401 LFRSTAAEVQQVLNRFSSAPL 421



 Score =  104 bits (259), Expect = 2e-22
 Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 34/238 (14%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
           +V++RGLP++ + E+V  F    C I  G  G+ F+   +GR +G+AFV    E+  + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
           L+K ++ +G RYIE+F+S   E+  VL             P         FV        
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446

Query: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
            RLRGLP+  T E+I+ F      +I  +G+ + ++ +G+ +G+AF+Q  S + A  A  
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTA 216
           K HK+ +  RY+EVF+ S EE+              S PP K   +  P  Y  P  A
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPA 563



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
           A  T Y  +E+ S +S       +  G  +   +S  Y+HR+ D E    +  +G C   
Sbjct: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218

Query: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
                   V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E 
Sbjct: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278

Query: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
              A+ + + +M  RYIE+       FL    G SN
Sbjct: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387

Query: 346 SKDRANMQHRYIELF 360
            K +  +  RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
           +F   +    C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++ 
Sbjct: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495

Query: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
            + + A +AA    + NM+ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521


>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
          Length = 677

 Score =  126 bits (317), Expect = 3e-29
 Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
           VV+ RGLPW  S +D+  F     I  G A +      +GR++GEA V   SE+   +AL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283

Query: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
           ++ +  MG RYIEV+K+   +    LK +G  S + A      N   VR+RGLPF  T E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340

Query: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
           E+V FF     +     GI     P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400

Query: 183 VFKSSQEEVRS----YSDPPL 199
           +F+S+  EV+     +S  PL
Sbjct: 401 LFRSTAAEVQQVLNRFSSAPL 421



 Score =  103 bits (257), Expect = 3e-22
 Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 22/202 (10%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
           +V++RGLP++ + E+V  F    C I  G  G+ F+   +GR +G+AFV    E+  + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
           L+K ++ +G RYIE+F+S   E+  VL             P         FV        
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446

Query: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
            RLRGLP+  T E+I+ F      +I  +G+ + ++ +G+ +G+AF+Q  S + A  A  
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 171 K-HKERIGHRYIEVFKSSQEEV 191
           K HK+ +  RY+EVF+ S EE+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528



 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 13  VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
           ++LRGLP++ ++ED+ +FL +        GVH +   +GR SG+AF+++ S D   MA +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 73  K-DRESMGHRYIEVFKSHRTEMDWVL 97
           K  +++M  RY+EVF+    EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
           A  T Y  +E+ S +S       +  G  +   +S  Y+HR+ D E    +  +G C   
Sbjct: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218

Query: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
                   V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E 
Sbjct: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278

Query: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
              A+ + + +M  RYIE+       FL    G SN
Sbjct: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387

Query: 346 SKDRANMQHRYIELF 360
            K +  +  RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
           +F   +    C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++ 
Sbjct: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495

Query: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
            + + A +AA    + NM+ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521


>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
          Length = 681

 Score =  126 bits (317), Expect = 3e-29
 Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
           VV+ RGLPW  S +D+  F     I  G A +      +GR++GEA V   SE+   +AL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283

Query: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
           ++ +  MG RYIEV+K+   +    LK +G  S + A      N   VR+RGLPF  T E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340

Query: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
           E+V FF     +     GI     P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400

Query: 183 VFKSSQEEVRS----YSDPPL 199
           +F+S+  EV+     +S  PL
Sbjct: 401 LFRSTAAEVQQVLNRFSSAPL 421



 Score =  104 bits (260), Expect = 1e-22
 Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
           +V++RGLP++ + E+V  F    C I  G  G+ F+   +GR +G+AFV    E+  + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
           L+K ++ +G RYIE+F+S   E+  VL             P         FV        
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446

Query: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
            RLRGLP+  T E+I+ F      +I  +G+ + ++ +G+ +G+AF+Q  S + A  A  
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217
           K HK+ +  RY+EVF+ S EE+              S PP K   +  P  Y  P  A  
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565

Query: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269
                 I + + +   R    ST Y   G + +   +  Y    G    L     +  LS
Sbjct: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625

Query: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309
           G            V    G  V M+GL Y     +I NFF
Sbjct: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
           A  T Y  +E+ S +S       +  G  +   +S  Y+HR+ D E    +  +G C   
Sbjct: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218

Query: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
                   V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E 
Sbjct: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278

Query: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
              A+ + + +M  RYIE+       FL    G SN
Sbjct: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387

Query: 346 SKDRANMQHRYIELF 360
            K +  +  RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
           +F   +    C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++ 
Sbjct: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495

Query: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
            + + A +AA    + NM+ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521


>gi|45935393 RNA binding motif protein 35B [Homo sapiens]
          Length = 717

 Score =  109 bits (273), Expect = 4e-24
 Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 21/222 (9%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
           VV+ RGLPW  S +DV  F     +  G  GV      +GR++GEA +     +   +AL
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305

Query: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
           ++ +  MG RYIEV+K+   E    +K +G  S + A      +   +RLRGLPF     
Sbjct: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362

Query: 126 EIVQFFSGLEIVPNG---ITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
           +++ F      V  G   +     P+G+ TG+AF  FA +ELA+ AL +HK  +G RYIE
Sbjct: 363 DVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE 422

Query: 183 VFKSSQEEVRS----YSDPPL--KFMSVQRPGPYD-RPGTAR 217
           +F+S+  EV+     Y+  PL     +   P P+   PGT R
Sbjct: 423 LFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGR 464



 Score =  105 bits (263), Expect = 6e-23
 Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 20/200 (10%)

Query: 12  VVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
           +++LRGLP+S    DV  FL  +C +  G  G+ F+   +GR +G+AF     E+  + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408

Query: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKH--SGP--------------NSADSANDGFVR 114
           L++ +  +G RYIE+F+S   E+  VL    SGP                A       VR
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVR 468

Query: 115 LRGLPFGCTKEEIVQFF--SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK- 171
           LRGLP+  T E+I+ F   +  +I P+G+ + ++ +G+ +G+AF+Q  S E A  A  + 
Sbjct: 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528

Query: 172 HKERIGHRYIEVFKSSQEEV 191
           HK+ +  RY+EV   S EE+
Sbjct: 529 HKKVMKERYVEVVPCSTEEM 548



 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 2/93 (2%)

Query: 100 SGPNSADSANDG--FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFV 157
           +GP S     D    VR RGLP+  + +++ +FF GL +   G+ L ++ +G+  GEA +
Sbjct: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293

Query: 158 QFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
           +F   E  + AL +HK  +G RYIEV+K++ EE
Sbjct: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326



 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 13  VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
           V+LRGLP++ ++ED+ +FL +        GVH +  ++GR SG+AF+++ S +    A +
Sbjct: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526

Query: 73  K-DRESMGHRYIEVFKSHRTEMDWVL 97
           +  ++ M  RY+EV      EM  VL
Sbjct: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)

Query: 281 FTVQSTTGH-CVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
           F +   TG  CV +RGLPY AT  DI +F     + + P  VH+ +   GR +G+A ++ 
Sbjct: 456 FPLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQM 515

Query: 336 ATHEEAVAAMSK-DRANMQHRYIELFLNST 364
            + E A+AA  +  +  M+ RY+E+   ST
Sbjct: 516 TSAERALAAAQRCHKKVMKERYVEVVPCST 545



 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIE-----IGPDGRVTGEADVEFATHEEAVAAM 345
           + +RGLP+ A   D+  F  P  PV    E       PDGR TG+A   FA  E A AA+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409

Query: 346 SKDRANMQHRYIELF 360
            + +  +  RYIELF
Sbjct: 410 RRHKGMLGKRYIELF 424



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
           V  RGLP+++++ D+  FF  LN  R  V + +   GR  GEA + F   E+   A+ + 
Sbjct: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308

Query: 349 RANMQHRYIELF 360
           + +M  RYIE++
Sbjct: 309 KHHMGVRYIEVY 320


>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
          Length = 932

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 38/211 (18%)

Query: 5   PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE 64
           P   +   V + G+P+S    DV++F     +      VH +    GR +G   V+  S 
Sbjct: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSP 353

Query: 65  DDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL--------KHSGPN------------- 103
            D   ALK++R  M  RY+EV  S  TE  WV         ++ GP+             
Sbjct: 354 QDTFEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRS 411

Query: 104 ----------SADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
                     S      GF V L+GLPF    + ++ FF  L+IV + I +   P GK T
Sbjct: 412 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471

Query: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEV 183
           GE FV+F ++   + AL +HK+ +G+R+I+V
Sbjct: 472 GEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502



 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 22/225 (9%)

Query: 10  GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
           GF V L+GLP+    + V +F     I + +  ++  Y   G+ +GE FVE  +E D K 
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDS--IYIAYGPNGKATGEGFVEFRNEADYKA 486

Query: 70  ALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSGPNSADSAN-----DGFVR------ 114
           AL + ++ MG+R+I+V     K    ++D + K     S D        +G V       
Sbjct: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546

Query: 115 -LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
            +  +PF  TK +++QF  G+ +  N + + VD  G+  G+A VQF +++ A K+   H+
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606

Query: 174 ERIGHRYIEVFKSSQEEVRSY-SDPPL---KFMSVQRPGPYDRPG 214
           +++  R   V   + E++R    +PP    K + +  PG    PG
Sbjct: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651



 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 288 GHCVHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
           G CV+++GLP++A    + +FF  L+ V   ++I  GP+G+ TGE  VEF    +  AA+
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488

Query: 346 SKDRANMQHRYIEL 359
            + +  M +R+I++
Sbjct: 489 CRHKQYMGNRFIQV 502



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
           V++L+GLP      D+++F S  TI DG  GVH +    G + GEAF+   +++D ++ +
Sbjct: 4   VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57

Query: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHS 100
            +   ++    + +  S +TEM  +++ S
Sbjct: 58  MRTGGTIKGSKVTLLLSSKTEMQNMIELS 86



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
           ++++ +PF  + +EI+ FF G +++P  + L  + +G  TGEA V F S++ A  A+   
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917

Query: 173 KER-IGHRYIEV 183
            +R IG R +++
Sbjct: 918 NDRPIGSRKVKL 929



 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 23/69 (33%), Positives = 38/69 (55%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
           V + G+P+ A END+ +FF  L    VH+     GR  G   V+F + ++   A+ ++R 
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365

Query: 351 NMQHRYIEL 359
            M  RY+E+
Sbjct: 366 LMIQRYVEV 374



 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
           +D +V + G+PF   + ++  FF GL +  + + L  D  G+  G   V+F S +   +A
Sbjct: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359

Query: 169 LGKHKERIGHRYIEVFKSSQEE 190
           L +++  +  RY+EV  +++ +
Sbjct: 360 LKRNRMLMIQRYVEVSPATERQ 381



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
           +RL+GLP      +I  FFSGL I   G+ +     G   GEAF+ FA+ E A   + + 
Sbjct: 5   IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHI----VGGELGEAFIVFATDEDARLGMMRT 60

Query: 173 KERIGHRYIEVFKSSQEEVRS 193
              I    + +  SS+ E+++
Sbjct: 61  GGTIKGSKVTLLLSSKTEMQN 81



 Score = 36.6 bits (83), Expect = 0.043
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEEAVAA 344
           + ++GLP  A   DI +FFS L          PDG V       GEA + FAT E+A   
Sbjct: 5   IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56

Query: 345 MSKDRANMQHRYIELFLNSTTGASN 369
           M +    ++   + L L+S T   N
Sbjct: 57  MMRTGGTIKGSKVTLLLSSKTEMQN 81



 Score = 36.2 bits (82), Expect = 0.056
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 290 CVHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
           C H+  +P+  T+ D+  F    P++   VH+ +  +G+  G+A V+F   ++A  +   
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604

Query: 348 DRANMQHRYIELFLNSTT 365
            R  +  R  E F++  T
Sbjct: 605 HRKKLNGR--EAFVHVVT 620



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 291 VHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
           + ++ +P+  + ++I +FF      P  V ++    G  TGEA V F + +EA AA+
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 914


>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
          Length = 932

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 38/211 (18%)

Query: 5   PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE 64
           P   +   V + G+P+S    DV++F     +      VH +    GR +G   V+  S 
Sbjct: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSP 353

Query: 65  DDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL--------KHSGPN------------- 103
            D   ALK++R  M  RY+EV  S  TE  WV         ++ GP+             
Sbjct: 354 QDTFEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRS 411

Query: 104 ----------SADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
                     S      GF V L+GLPF    + ++ FF  L+IV + I +   P GK T
Sbjct: 412 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471

Query: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEV 183
           GE FV+F ++   + AL +HK+ +G+R+I+V
Sbjct: 472 GEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502



 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 22/225 (9%)

Query: 10  GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
           GF V L+GLP+    + V +F     I + +  ++  Y   G+ +GE FVE  +E D K 
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDS--IYIAYGPNGKATGEGFVEFRNEADYKA 486

Query: 70  ALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSGPNSADSAN-----DGFVR------ 114
           AL + ++ MG+R+I+V     K    ++D + K     S D        +G V       
Sbjct: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546

Query: 115 -LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
            +  +PF  TK +++QF  G+ +  N + + VD  G+  G+A VQF +++ A K+   H+
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606

Query: 174 ERIGHRYIEVFKSSQEEVRSY-SDPPL---KFMSVQRPGPYDRPG 214
           +++  R   V   + E++R    +PP    K + +  PG    PG
Sbjct: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651



 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 288 GHCVHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
           G CV+++GLP++A    + +FF  L+ V   ++I  GP+G+ TGE  VEF    +  AA+
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488

Query: 346 SKDRANMQHRYIEL 359
            + +  M +R+I++
Sbjct: 489 CRHKQYMGNRFIQV 502



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
           V++L+GLP      D+++F S  TI DG  GVH +    G + GEAF+   +++D ++ +
Sbjct: 4   VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57

Query: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHS 100
            +   ++    + +  S +TEM  +++ S
Sbjct: 58  MRTGGTIKGSKVTLLLSSKTEMQNMIELS 86



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
           ++++ +PF  + +EI+ FF G +++P  + L  + +G  TGEA V F S++ A  A+   
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917

Query: 173 KER-IGHRYIEV 183
            +R IG R +++
Sbjct: 918 NDRPIGSRKVKL 929



 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 23/69 (33%), Positives = 38/69 (55%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
           V + G+P+ A END+ +FF  L    VH+     GR  G   V+F + ++   A+ ++R 
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365

Query: 351 NMQHRYIEL 359
            M  RY+E+
Sbjct: 366 LMIQRYVEV 374



 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
           +D +V + G+PF   + ++  FF GL +  + + L  D  G+  G   V+F S +   +A
Sbjct: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359

Query: 169 LGKHKERIGHRYIEVFKSSQEE 190
           L +++  +  RY+EV  +++ +
Sbjct: 360 LKRNRMLMIQRYVEVSPATERQ 381



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
           +RL+GLP      +I  FFSGL I   G+ +     G   GEAF+ FA+ E A   + + 
Sbjct: 5   IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHI----VGGELGEAFIVFATDEDARLGMMRT 60

Query: 173 KERIGHRYIEVFKSSQEEVRS 193
              I    + +  SS+ E+++
Sbjct: 61  GGTIKGSKVTLLLSSKTEMQN 81



 Score = 36.6 bits (83), Expect = 0.043
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)

Query: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEEAVAA 344
           + ++GLP  A   DI +FFS L          PDG V       GEA + FAT E+A   
Sbjct: 5   IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56

Query: 345 MSKDRANMQHRYIELFLNSTTGASN 369
           M +    ++   + L L+S T   N
Sbjct: 57  MMRTGGTIKGSKVTLLLSSKTEMQN 81



 Score = 36.2 bits (82), Expect = 0.056
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 290 CVHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
           C H+  +P+  T+ D+  F    P++   VH+ +  +G+  G+A V+F   ++A  +   
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604

Query: 348 DRANMQHRYIELFLNSTT 365
            R  +  R  E F++  T
Sbjct: 605 HRKKLNGR--EAFVHVVT 620



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 291 VHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
           + ++ +P+  + ++I +FF      P  V ++    G  TGEA V F + +EA AA+
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 914


>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
          Length = 1001

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 26/251 (10%)

Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
           +RL GLPF     +I  FF+GL I   G+ +     G   GEAF+ FA+ E A +A+ + 
Sbjct: 5   IRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISRS 60

Query: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
              I    +E+F SS+ E++      ++     R G   RPG+    +  +    +E ++
Sbjct: 61  GGFIKDSSVELFLSSKAEMQK----TIEMKRTDRVGR-GRPGSGTSGVDSLSNF-IESVK 114

Query: 233 PGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
             A ++GYG     S ++   GF T+  G                  +          + 
Sbjct: 115 EEASNSGYG-----SSINQDAGFHTNGTGHG-----------NLRPRKTRPLKAENPYLF 158

Query: 293 MRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANM 352
           +RGLPY   E+D+  FFS L    V      DGR  G+A V+FA+  +A   +   R+ M
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 218

Query: 353 QHRYIELFLNS 363
             R+IE+   S
Sbjct: 219 GSRFIEVMQGS 229



 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 66/237 (27%)

Query: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
           V++L GLP+     D+++F +  TI DG  GVH I    G + GEAF+   +++D + A+
Sbjct: 4   VIRLLGLPFIAGPVDIRHFFTGLTIPDG--GVHII----GGEIGEAFIIFATDEDARRAI 57

Query: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGPNSADS------------ 107
            +    +    +E+F S + EM   ++             SG +  DS            
Sbjct: 58  SRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEA 117

Query: 108 ----------------------------------ANDGFVRLRGLPFGCTKEEIVQFFSG 133
                                             A + ++ LRGLP+   ++++  FFSG
Sbjct: 118 SNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSG 177

Query: 134 LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
           L +  +G+      +G+  G+A V+FAS   A   L  H+  +G R+IEV + S+++
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQ 232



 Score = 68.9 bits (167), Expect = 8e-12
 Identities = 98/432 (22%), Positives = 158/432 (36%), Gaps = 110/432 (25%)

Query: 15  LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKD 74
           LRGLP+  + +DV+ F S   +     GV F+   +GR +G+A V+  S  D    LK  
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVD----GVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214

Query: 75  RESMGHRYIEVFKSHRTEMDWV----------------LKHSGPNSAD------------ 106
           R  MG R+IEV +   +E  W+                 +HS P   +            
Sbjct: 215 RSFMGSRFIEVMQG--SEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKS 272

Query: 107 -------SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQF 159
                  S    +V L+ L     + ++  FF G ++    I      E + T  AFV F
Sbjct: 273 PRRTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMF 331

Query: 160 ASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRY 219
            + +    AL  HK  + +R + +   S++++       LKF++      Y++       
Sbjct: 332 KTLKDYNTALSLHKTVLQYRPVHIDPISRKQM-------LKFIA-----RYEKK------ 373

Query: 220 IGIVKQAGLERMRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDS 279
               +   LER RPG  S  Y   E  SG                               
Sbjct: 374 ----RSGSLERDRPGHVSQKY-SQEGNSGQK----------------------------- 399

Query: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFAT 337
                     C+++R  P+  T+ ++  FF+   L    +++     G   GEA V+F +
Sbjct: 400 ---------LCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKS 450

Query: 338 HEEAVAAMSKDRANMQHRYIELFLNSTT-----GASNGAYSSQVMQGMGVSAAQATYSGL 392
            E+A+ A   +R       + L L S       G +    SS+ MQ    S  +  +S L
Sbjct: 451 EEQAMKAERLNRRRFLGTEVLLRLISEAQIQEFGVNFSVMSSEKMQARSQSRERGDHSHL 510

Query: 393 ESQSVSGCYGAG 404
                   Y  G
Sbjct: 511 FDSKDPPIYSVG 522



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 22/185 (11%)

Query: 10  GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
           GF V L+ L  S    D++NF     + D    + F+Y  E R +  AFV   +  D   
Sbjct: 283 GFYVHLKNLSLSIDERDLRNFFRGTDLTDEQ--IRFLYKDENR-TRYAFVMFKTLKDYNT 339

Query: 70  ALKKDRESMGHRYIEVFKSHRTEM-----DWVLKHSGPNSAD-----------SANDG-- 111
           AL   +  + +R + +    R +M      +  K SG    D             N G  
Sbjct: 340 ALSLHKTVLQYRPVHIDPISRKQMLKFIARYEKKRSGSLERDRPGHVSQKYSQEGNSGQK 399

Query: 112 -FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
             + +R  PF  TK E+ +FF+   +  + I L  D +G   GEA V+F S+E A KA  
Sbjct: 400 LCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAER 459

Query: 171 KHKER 175
            ++ R
Sbjct: 460 LNRRR 464



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
           +++  LPF     EI+ FF G  I+P+ +++  + +G  TGEA V   +   A  A+   
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986

Query: 173 KER-IGHRYIEV 183
            +R +G R +++
Sbjct: 987 NDRPVGPRKVKL 998



 Score = 36.2 bits (82), Expect = 0.056
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 291 VHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
           + +  LP+KA  N+I +FF    + P  V I+    G  TGEA V    + EA+AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAI 983


>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 18/169 (10%)

Query: 13  VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
           VKLRG P++ + ++V  FL+          +  +    G ++G  FV+  +E++VK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351

Query: 73  KDRESMGHRYIEVFKS----------HRTEMDWVLKHSGPN--SADSANDGFVRLRGLPF 120
            +RE MG RYIEVF+             T   W  +  G N    D A  G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDP-EGKITGEAFVQFASQELAEKA 168
             T+E++ + FS    + + +  P+D    K  G AF+ F   E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459



 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 32/88 (36%), Positives = 45/88 (51%)

Query: 284 QSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVA 343
           + TT H V +RG P+  TE ++  F +PL PV + I     G  TG   V+F+  EE   
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348

Query: 344 AMSKDRANMQHRYIELFLNSTTGASNGA 371
           A+  +R  M  RYIE+F       + GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
           V+LRG PF  T++ +++F + L+  P  I +  +  G  TG  FV F+++E  ++AL  +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353

Query: 173 KERIGHRYIEVFK 185
           +E +G RYIEVF+
Sbjct: 354 REYMGGRYIEVFR 366



 Score = 32.3 bits (72), Expect = 0.81
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 115 LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKE 174
           ++ LP G  +E   Q F+    + +  +L    +GK     F+ F S+E A+KA    ++
Sbjct: 6   VKNLPNGMKEERFRQLFAAFGTLTD-CSLKFTKDGKFRKFGFIGFKSEEEAQKA----QK 60

Query: 175 RIGHRYIEVFKSSQEEVRSYSDP 197
                +I+  + + E  +S+ DP
Sbjct: 61  HFNKSFIDTSRITVEFCKSFGDP 83


>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 18/169 (10%)

Query: 13  VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
           VKLRG P++ + ++V  FL+          +  +    G ++G  FV+  +E++VK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351

Query: 73  KDRESMGHRYIEVFKS----------HRTEMDWVLKHSGPN--SADSANDGFVRLRGLPF 120
            +RE MG RYIEVF+             T   W  +  G N    D A  G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDP-EGKITGEAFVQFASQELAEKA 168
             T+E++ + FS    + + +  P+D    K  G AF+ F   E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459



 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 32/88 (36%), Positives = 45/88 (51%)

Query: 284 QSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVA 343
           + TT H V +RG P+  TE ++  F +PL PV + I     G  TG   V+F+  EE   
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348

Query: 344 AMSKDRANMQHRYIELFLNSTTGASNGA 371
           A+  +R  M  RYIE+F       + GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
           V+LRG PF  T++ +++F + L+  P  I +  +  G  TG  FV F+++E  ++AL  +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353

Query: 173 KERIGHRYIEVFK 185
           +E +G RYIEVF+
Sbjct: 354 REYMGGRYIEVFR 366



 Score = 32.3 bits (72), Expect = 0.81
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 115 LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKE 174
           ++ LP G  +E   Q F+    + +  +L    +GK     F+ F S+E A+KA    ++
Sbjct: 6   VKNLPNGMKEERFRQLFAAFGTLTD-CSLKFTKDGKFRKFGFIGFKSEEEAQKA----QK 60

Query: 175 RIGHRYIEVFKSSQEEVRSYSDP 197
                +I+  + + E  +S+ DP
Sbjct: 61  HFNKSFIDTSRITVEFCKSFGDP 83


>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 18/169 (10%)

Query: 13  VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
           VKLRG P++ + ++V  FL+          +  +    G ++G  FV+  +E++VK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351

Query: 73  KDRESMGHRYIEVFKS----------HRTEMDWVLKHSGPN--SADSANDGFVRLRGLPF 120
            +RE MG RYIEVF+             T   W  +  G N    D A  G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411

Query: 121 GCTKEEIVQFFSGLEIVPNGITLPVDP-EGKITGEAFVQFASQELAEKA 168
             T+E++ + FS    + + +  P+D    K  G AF+ F   E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459



 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 32/88 (36%), Positives = 45/88 (51%)

Query: 284 QSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVA 343
           + TT H V +RG P+  TE ++  F +PL PV + I     G  TG   V+F+  EE   
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348

Query: 344 AMSKDRANMQHRYIELFLNSTTGASNGA 371
           A+  +R  M  RYIE+F       + GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
           V+LRG PF  T++ +++F + L+  P  I +  +  G  TG  FV F+++E  ++AL  +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353

Query: 173 KERIGHRYIEVFK 185
           +E +G RYIEVF+
Sbjct: 354 REYMGGRYIEVFR 366



 Score = 32.3 bits (72), Expect = 0.81
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 115 LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKE 174
           ++ LP G  +E   Q F+    + +  +L    +GK     F+ F S+E A+KA    ++
Sbjct: 6   VKNLPNGMKEERFRQLFAAFGTLTD-CSLKFTKDGKFRKFGFIGFKSEEEAQKA----QK 60

Query: 175 RIGHRYIEVFKSSQEEVRSYSDP 197
                +I+  + + E  +S+ DP
Sbjct: 61  HFNKSFIDTSRITVEFCKSFGDP 83


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 13/161 (8%)

Query: 16  RGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KD 74
           + LP+  + ++++    D      AA +  + +++G+  G A++E  +E D +   + K 
Sbjct: 398 KNLPYKVTQDELKEVFED------AAEIRLV-SKDGKSKGIAYIEFKTEADAEKTFEEKQ 450

Query: 75  RESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGL 134
              +  R I ++ +     +   +  G NS  S     + L  L +  T+E + + F   
Sbjct: 451 GTEIDGRSISLYYTGEKGQNQDYR-GGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 509

Query: 135 EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKER 175
                 I +P +  GK  G AF++FAS E A++AL    +R
Sbjct: 510 TF----IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 546



 Score = 36.2 bits (82), Expect = 0.056
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 39/222 (17%)

Query: 159 FASQELAEKALGKH--KERIGHRYIEV---FKSSQEEVRSYSDPPLKFMSVQRPGPYDRP 213
           F ++   EK  GK   KER     +     +K +Q+E++   +   +   V + G     
Sbjct: 372 FGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGK--SK 429

Query: 214 GTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGM-- 271
           G A  YI    +A  E+            +EE  G        T++ GR +S   +G   
Sbjct: 430 GIA--YIEFKTEADAEKT-----------FEEKQG--------TEIDGRSISLYYTGEKG 468

Query: 272 --YDHRYG-DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
              D+R G +S ++ +S T   + +  L Y ATE  +   F     ++V      +G+  
Sbjct: 469 QNQDYRGGKNSTWSGESKT---LVLSNLSYSATEETLQEVFEKATFIKV--PQNQNGKSK 523

Query: 329 GEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGASN 369
           G A +EFA+ E+A  A+ S ++  ++ R I L L    G+ N
Sbjct: 524 GYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 565



 Score = 33.9 bits (76), Expect = 0.28
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 15/107 (14%)

Query: 294 RGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM 352
           + LPYK T++++   F     +R+   +  DG+  G A +EF T  +A      K    +
Sbjct: 398 KNLPYKVTQDELKEVFEDAAEIRL---VSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 454

Query: 353 QHRYIELFLNSTTGAS-----------NGAYSSQVMQGMGVSAAQAT 388
             R I L+     G +           +G   + V+  +  SA + T
Sbjct: 455 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET 501


>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
           [Homo sapiens]
          Length = 963

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 46  IYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSG 101
           I++  G   G  +VE   E     AL+ DR+S+  R + V     KS   +   V ++S 
Sbjct: 738 IFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFK-VFRYS- 795

Query: 102 PNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFAS 161
                S     + + GLPF CTKEE+ +       V + + L  +  GK  G A+V++ +
Sbjct: 796 ----TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKD-LRLVTNRAGKPKGLAYVEYEN 850

Query: 162 QELAEKALGK 171
           +  A +A+ K
Sbjct: 851 ESQASQAVMK 860



 Score = 35.8 bits (81), Expect = 0.073
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 15  LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKK 73
           + GLP+SC+ E+++     C  H     +  +  R G+  G A+VE  +E     A+ K
Sbjct: 805 ISGLPFSCTKEELEEI---CKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 860


>gi|50053795 eukaryotic translation initiation factor 4B [Homo
           sapiens]
          Length = 611

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 115 LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEG--KITGEAFVQFASQELAEKALGKH 172
           L  LP+  T+E I +FF GL I  + + LP +P    ++ G  + +F   +    AL  +
Sbjct: 100 LGNLPYDVTEESIKEFFRGLNI--SAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLN 157

Query: 173 KERIGHRYIEVFKSSQEEVRSYSD 196
           +E +G+R I V  + Q + +   D
Sbjct: 158 EESLGNRRIRVDVADQAQDKDRDD 181



 Score = 30.8 bits (68), Expect = 2.4
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 296 LPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQ 353
           LPY  TE  I  FF  LN   VR+  E     R+ G    EF   +  ++A+S +  ++ 
Sbjct: 103 LPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG 162

Query: 354 HRYIEL 359
           +R I +
Sbjct: 163 NRRIRV 168


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 61/265 (23%), Positives = 96/265 (36%), Gaps = 46/265 (17%)

Query: 17  GLPWSCSVEDVQNFLS------DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
           GL W  S +D+  +LS      DCTI              GR  G  FV       V   
Sbjct: 154 GLSWDTSKKDLTEYLSRFGEVVDCTIKTDPV--------TGRSRGFGFVLFKDAASVDKV 205

Query: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130
           L+     +  + I+  ++        LK   P          V + GL    ++E+I ++
Sbjct: 206 LELKEHKLDGKLIDPKRAK------ALKGKEPPKK-------VFVGGLSPDTSEEQIKEY 252

Query: 131 FSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 189
           F     + N I LP+D +  +  G  F+ +  +E  +K L     +IG    E+  +  +
Sbjct: 253 FGAFGEIEN-IELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311

Query: 190 EVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGL 249
           EV        K       G   R GT           G  R +   ++ G+  Y +    
Sbjct: 312 EVYRQQQQQQKGGRGAAAG--GRGGTR----------GRGRGQGQNWNQGFNNYYD---- 355

Query: 250 SDGYGFTTDLFGRDLSYCLSGMYDH 274
             GYG     +G D +Y   G YD+
Sbjct: 356 -QGYGNYNSAYGGDQNYSGYGGYDY 379


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 43/242 (17%)

Query: 17  GLPWSCSVEDVQNFLS------DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
           GL WS + E ++++ S      DC I           T + R  G  FV+    + V   
Sbjct: 16  GLDWSTTQETLRSYFSQYGEVVDCVIMKDKT------TNQSR--GFGFVKFKDPNCVGTV 67

Query: 71  LKKDRESMGHRYIEVF---------KSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFG 121
           L     ++  R I+           +  R +  W     GP S D++    + + G+P  
Sbjct: 68  LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW---QKGPRS-DNSKSNKIFVGGIPHN 123

Query: 122 CTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181
           C + E+ ++F    +V   + +    + +  G  F+ F  ++  ++A+  H   I  + +
Sbjct: 124 CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKV 183

Query: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQA--GLERMRPGAYSTG 239
           EV ++   + +S           Q PG   +PG ++    +V  A  G     P  +  G
Sbjct: 184 EVKRAEPRDSKS-----------QAPG---QPGASQWGSRVVPNAANGWAGQPPPTWQQG 229

Query: 240 YG 241
           YG
Sbjct: 230 YG 231


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,731,146
Number of Sequences: 37866
Number of extensions: 777754
Number of successful extensions: 2302
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1831
Number of HSP's gapped (non-prelim): 247
length of query: 415
length of database: 18,247,518
effective HSP length: 105
effective length of query: 310
effective length of database: 14,271,588
effective search space: 4424192280
effective search space used: 4424192280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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