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Search of human proteins with 4826665
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826665 copper chaperone for superoxide dismutase [Homo
sapiens]
(274 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4826665 copper chaperone for superoxide dismutase [Homo sapiens] 563 e-161
gi|4507149 superoxide dismutase 1, soluble [Homo sapiens] 143 1e-34
gi|118582275 superoxide dismutase 3, extracellular precursor [Ho... 87 2e-17
gi|55743073 ATPase, Cu++ transporting, beta polypeptide isoform ... 37 0.014
gi|55743071 ATPase, Cu++ transporting, beta polypeptide isoform ... 37 0.014
gi|4757804 antioxidant protein 1 [Homo sapiens] 35 0.054
gi|115529486 ATPase, Cu++ transporting, alpha polypeptide [Homo ... 31 1.3
gi|110349719 titin isoform N2-A [Homo sapiens] 30 2.3
gi|110349717 titin isoform novex-2 [Homo sapiens] 30 2.3
gi|110349713 titin isoform novex-1 [Homo sapiens] 30 2.3
gi|110349715 titin isoform N2-B [Homo sapiens] 30 2.3
gi|8670534 8-oxoguanine DNA-glycosylase 1 isoform 2a [Homo sapiens] 30 3.0
gi|8670542 8-oxoguanine DNA-glycosylase 1 isoform 2e [Homo sapiens] 30 3.0
gi|8670540 8-oxoguanine DNA-glycosylase 1 isoform 2d [Homo sapiens] 30 3.0
gi|8670536 8-oxoguanine DNA-glycosylase 1 isoform 2b [Homo sapiens] 30 3.0
gi|8670532 8-oxoguanine DNA-glycosylase 1 isoform 1c [Homo sapiens] 30 3.0
gi|8670530 8-oxoguanine DNA-glycosylase 1 isoform 1b [Homo sapiens] 30 3.0
gi|4505495 8-oxoguanine DNA-glycosylase 1 isoform 1a [Homo sapiens] 30 3.0
gi|239740924 PREDICTED: hypothetical protein XP_002344098 [Homo ... 30 3.0
gi|239740802 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|239740658 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|239756427 PREDICTED: similar to 3-phosphoinositide dependent ... 29 5.1
gi|40317626 thrombospondin 1 precursor [Homo sapiens] 28 8.6
gi|169204760 PREDICTED: hypothetical protein [Homo sapiens] 28 8.6
gi|169205546 PREDICTED: hypothetical protein [Homo sapiens] 28 8.6
gi|169204158 PREDICTED: hypothetical protein [Homo sapiens] 28 8.6
gi|156546992 zinc finger protein 214 [Homo sapiens] 28 8.6
gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens] 28 8.6
>gi|4826665 copper chaperone for superoxide dismutase [Homo sapiens]
Length = 274
Score = 563 bits (1450), Expect = e-161
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQ 60
MASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQ
Sbjct: 1 MASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQ 60
Query: 61 EVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTID 120
EVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTID
Sbjct: 61 EVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTID 120
Query: 121 GLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAI 180
GLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAI
Sbjct: 121 GLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAI 180
Query: 181 FRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNP 240
FRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNP
Sbjct: 181 FRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNP 240
Query: 241 KQICSCDGLTIWEERGRPIAGKGRKESAQPPAHL 274
KQICSCDGLTIWEERGRPIAGKGRKESAQPPAHL
Sbjct: 241 KQICSCDGLTIWEERGRPIAGKGRKESAQPPAHL 274
>gi|4507149 superoxide dismutase 1, soluble [Homo sapiens]
Length = 154
Score = 143 bits (361), Expect = 1e-34
Identities = 73/146 (50%), Positives = 94/146 (64%), Gaps = 4/146 (2%)
Query: 89 AVAILGGPGTVQGVVRFLQLTPERCL-IEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNH 147
AV +L G G VQG++ F Q + + G+I GL GLHG HVH++GD T C S G H
Sbjct: 5 AVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPH 64
Query: 148 FNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWD---VIGRSLIIDEGE 204
FNP HGGP+D +RH GDLGNV AD DG A +ED + + +IGR+L++ E
Sbjct: 65 FNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKA 124
Query: 205 DDLGRGGHPLSKITGNSGERLACGII 230
DDLG+GG+ S TGN+G RLACG+I
Sbjct: 125 DDLGKGGNEESTKTGNAGSRLACGVI 150
>gi|118582275 superoxide dismutase 3, extracellular precursor [Homo
sapiens]
Length = 240
Score = 86.7 bits (213), Expect = 2e-17
Identities = 63/178 (35%), Positives = 85/178 (47%), Gaps = 29/178 (16%)
Query: 99 VQGVVRFLQLTPERCL-----IEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGA 153
V GVV F QL P L +EG +HVHQ+GDL+ C S G H+NP
Sbjct: 78 VTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAV 137
Query: 154 SHGGPQDSDRHRGDLGN--VRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGG 211
H PQ H GD GN VR + R + ++GR++++ GEDDLGRGG
Sbjct: 138 PH--PQ----HPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRGG 191
Query: 212 HPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGLTIWEERGRPIA--GKGRKES 267
+ S GN+G RLAC ++ +C G +WE + R + K R+ES
Sbjct: 192 NQASVENGNAGRRLACCVVG-----------VC---GPGLWERQAREHSERKKRRRES 235
>gi|55743073 ATPase, Cu++ transporting, beta polypeptide isoform b
[Homo sapiens]
Length = 1258
Score = 37.4 bits (85), Expect = 0.014
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 8 QGTLCTLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLV---HTTLPSQEVQ 63
QGT T A+ MTC SCV ++ + + GVQ + V L + V + + +E++
Sbjct: 355 QGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPSVISPEELR 414
Query: 64 ALLEGTGRQA--VLKGMGSGQLQNLGAAVAIL----GGPGTVQGV 102
A +E G +A V + + L N A +++ G P +VQ V
Sbjct: 415 AAIEDMGFEASVVSESCSTNPLGNHSAGNSMVQTTDGTPTSVQEV 459
Score = 32.7 bits (73), Expect = 0.35
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 6 GNQGT-LCTLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLV----HTTLP- 58
G+QG+ + TL+ + M C+SCV + +++ + GVQ ++V LE++ V T P
Sbjct: 250 GHQGSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPV 309
Query: 59 --SQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGP--GTVQG-----VVRFLQLT 109
+ ++AL G + ++ G + ++ G P VQG ++ +T
Sbjct: 310 ALQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMT 369
Query: 110 PERCL--IEGTIDGLE 123
C+ IEG I LE
Sbjct: 370 CASCVHSIEGMISQLE 385
Score = 31.2 bits (69), Expect = 1.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 20 MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLV 53
MTCQSCV ++ ++ + GV V+V L +Q ++
Sbjct: 152 MTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVI 185
Score = 29.3 bits (64), Expect = 3.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 20 MTCQSCVDAVRKSLQGVAGVQDVEVHLE 47
MTCQSCV ++ + + G+ ++V LE
Sbjct: 67 MTCQSCVKSIEDRISNLKGIISMKVSLE 94
Score = 28.9 bits (63), Expect = 5.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 20 MTCQSCVDAVRKSLQGVAGVQDVEVHL 46
MTC SCV + ++LQ AGV V V L
Sbjct: 497 MTCASCVSNIERNLQKEAGVLSVLVAL 523
>gi|55743071 ATPase, Cu++ transporting, beta polypeptide isoform a
[Homo sapiens]
Length = 1465
Score = 37.4 bits (85), Expect = 0.014
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 8 QGTLCTLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLV---HTTLPSQEVQ 63
QGT T A+ MTC SCV ++ + + GVQ + V L + V + + +E++
Sbjct: 355 QGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPSVISPEELR 414
Query: 64 ALLEGTGRQA--VLKGMGSGQLQNLGAAVAIL----GGPGTVQGV 102
A +E G +A V + + L N A +++ G P +VQ V
Sbjct: 415 AAIEDMGFEASVVSESCSTNPLGNHSAGNSMVQTTDGTPTSVQEV 459
Score = 32.7 bits (73), Expect = 0.35
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 6 GNQGT-LCTLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLV----HTTLP- 58
G+QG+ + TL+ + M C+SCV + +++ + GVQ ++V LE++ V T P
Sbjct: 250 GHQGSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPV 309
Query: 59 --SQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGP--GTVQG-----VVRFLQLT 109
+ ++AL G + ++ G + ++ G P VQG ++ +T
Sbjct: 310 ALQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMT 369
Query: 110 PERCL--IEGTIDGLE 123
C+ IEG I LE
Sbjct: 370 CASCVHSIEGMISQLE 385
Score = 31.2 bits (69), Expect = 1.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 20 MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLV 53
MTCQSCV ++ ++ + GV V+V L +Q ++
Sbjct: 152 MTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVI 185
Score = 29.3 bits (64), Expect = 3.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 20 MTCQSCVDAVRKSLQGVAGVQDVEVHLE 47
MTCQSCV ++ + + G+ ++V LE
Sbjct: 67 MTCQSCVKSIEDRISNLKGIISMKVSLE 94
Score = 28.9 bits (63), Expect = 5.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 20 MTCQSCVDAVRKSLQGVAGVQDVEVHL 46
MTC SCV + ++LQ AGV V V L
Sbjct: 497 MTCASCVSNIERNLQKEAGVLSVLVAL 523
>gi|4757804 antioxidant protein 1 [Homo sapiens]
Length = 68
Score = 35.4 bits (80), Expect = 0.054
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 15 EFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAV 74
EF+V MTC C +AV + L + GV+ ++ L ++ V + + + A L+ TG+
Sbjct: 5 EFSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVS 63
Query: 75 LKGM 78
G+
Sbjct: 64 YLGL 67
>gi|115529486 ATPase, Cu++ transporting, alpha polypeptide [Homo
sapiens]
Length = 1500
Score = 30.8 bits (68), Expect = 1.3
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQ---MVLVHTTLPSQEVQALLEGTGRQAVLK 76
MTC SC + + + GVQ ++V L++Q +V + +E++ +E G A +K
Sbjct: 180 MTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVK 239
Score = 30.8 bits (68), Expect = 1.3
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 20 MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPS-------QEVQALLEGTGRQ 72
M C+SCV + +L + V + V LE++ +V S + ++A+ G R
Sbjct: 286 MHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVKYNASSVTPESLRKAIEAVSPGLYRV 345
Query: 73 AVLKGM-------GSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCL--IEGTIDGLE 123
++ + S LQ + + ++ P T + V+ +T C+ IEG I +
Sbjct: 346 SITSEVESTSNSPSSSSLQKI--PLNVVSQPLTQETVINIDGMTCNSCVQSIEGVI-SKK 402
Query: 124 PGLHGLHV 131
PG+ + V
Sbjct: 403 PGVKSIRV 410
Score = 29.3 bits (64), Expect = 3.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 20 MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQ 49
MTC SCV + + + V GV ++V LE++
Sbjct: 17 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEK 46
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 30.0 bits (66), Expect = 2.3
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 39 VQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGT 98
+++ +E + + TTL V+ + G Q +LK G +++ V +L PG
Sbjct: 24748 LEETAARMEIKSTIQKTTLV---VKDCIRTDGGQYILKLSNVGGTKSIPITVKVLDRPGP 24804
Query: 99 VQGVVRFLQLTPERCLI 115
+G ++ +T E+C +
Sbjct: 24805 PEGPLKVTGVTAEKCYL 24821
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 30.0 bits (66), Expect = 2.3
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 39 VQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGT 98
+++ +E + + TTL V+ + G Q +LK G +++ V +L PG
Sbjct: 18443 LEETAARMEIKSTIQKTTLV---VKDCIRTDGGQYILKLSNVGGTKSIPITVKVLDRPGP 18499
Query: 99 VQGVVRFLQLTPERCLI 115
+G ++ +T E+C +
Sbjct: 18500 PEGPLKVTGVTAEKCYL 18516
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 30.0 bits (66), Expect = 2.3
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 39 VQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGT 98
+++ +E + + TTL V+ + G Q +LK G +++ V +L PG
Sbjct: 18376 LEETAARMEIKSTIQKTTLV---VKDCIRTDGGQYILKLSNVGGTKSIPITVKVLDRPGP 18432
Query: 99 VQGVVRFLQLTPERCLI 115
+G ++ +T E+C +
Sbjct: 18433 PEGPLKVTGVTAEKCYL 18449
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 30.0 bits (66), Expect = 2.3
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 39 VQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGT 98
+++ +E + + TTL V+ + G Q +LK G +++ V +L PG
Sbjct: 18251 LEETAARMEIKSTIQKTTLV---VKDCIRTDGGQYILKLSNVGGTKSIPITVKVLDRPGP 18307
Query: 99 VQGVVRFLQLTPERCLI 115
+G ++ +T E+C +
Sbjct: 18308 PEGPLKVTGVTAEKCYL 18324
>gi|8670534 8-oxoguanine DNA-glycosylase 1 isoform 2a [Homo sapiens]
Length = 424
Score = 29.6 bits (65), Expect = 3.0
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 32 SLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVA 91
SLQ +AG +VE HL + S +A+LE G A L+ + + A+
Sbjct: 183 SLQALAG-PEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALC 241
Query: 92 ILGGPGT 98
IL G GT
Sbjct: 242 ILPGVGT 248
>gi|8670542 8-oxoguanine DNA-glycosylase 1 isoform 2e [Homo sapiens]
Length = 322
Score = 29.6 bits (65), Expect = 3.0
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 32 SLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVA 91
SLQ +AG +VE HL + S +A+LE G A L+ + + A+
Sbjct: 183 SLQALAG-PEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALC 241
Query: 92 ILGGPGT 98
IL G GT
Sbjct: 242 ILPGVGT 248
>gi|8670540 8-oxoguanine DNA-glycosylase 1 isoform 2d [Homo sapiens]
Length = 356
Score = 29.6 bits (65), Expect = 3.0
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 32 SLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVA 91
SLQ +AG +VE HL + S +A+LE G A L+ + + A+
Sbjct: 183 SLQALAG-PEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALC 241
Query: 92 ILGGPGT 98
IL G GT
Sbjct: 242 ILPGVGT 248
>gi|8670536 8-oxoguanine DNA-glycosylase 1 isoform 2b [Homo sapiens]
Length = 357
Score = 29.6 bits (65), Expect = 3.0
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 32 SLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVA 91
SLQ +AG +VE HL + S +A+LE G A L+ + + A+
Sbjct: 183 SLQALAG-PEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALC 241
Query: 92 ILGGPGT 98
IL G GT
Sbjct: 242 ILPGVGT 248
>gi|8670532 8-oxoguanine DNA-glycosylase 1 isoform 1c [Homo sapiens]
Length = 410
Score = 29.6 bits (65), Expect = 3.0
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 32 SLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVA 91
SLQ +AG +VE HL + S +A+LE G A L+ + + A+
Sbjct: 183 SLQALAG-PEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALC 241
Query: 92 ILGGPGT 98
IL G GT
Sbjct: 242 ILPGVGT 248
>gi|8670530 8-oxoguanine DNA-glycosylase 1 isoform 1b [Homo sapiens]
Length = 324
Score = 29.6 bits (65), Expect = 3.0
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 32 SLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVA 91
SLQ +AG +VE HL + S +A+LE G A L+ + + A+
Sbjct: 183 SLQALAG-PEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALC 241
Query: 92 ILGGPGT 98
IL G GT
Sbjct: 242 ILPGVGT 248
>gi|4505495 8-oxoguanine DNA-glycosylase 1 isoform 1a [Homo sapiens]
Length = 345
Score = 29.6 bits (65), Expect = 3.0
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 32 SLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVA 91
SLQ +AG +VE HL + S +A+LE G A L+ + + A+
Sbjct: 183 SLQALAG-PEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALC 241
Query: 92 ILGGPGT 98
IL G GT
Sbjct: 242 ILPGVGT 248
>gi|239740924 PREDICTED: hypothetical protein XP_002344098 [Homo
sapiens]
Length = 155
Score = 29.6 bits (65), Expect = 3.0
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 31 KSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMG----SGQLQNL 86
+SL+ A D +H+ L H+ + L G R + +K +G +G+L+
Sbjct: 8 RSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLRAGRLE-- 65
Query: 87 GAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPG 125
GA +L G V G + L + RC + EPG
Sbjct: 66 GARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPG 104
>gi|239740802 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 29.6 bits (65), Expect = 3.0
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 31 KSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMG----SGQLQNL 86
+SL+ A D +H+ L H+ + L G R + +K +G +G+L+
Sbjct: 8 RSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLRAGRLE-- 65
Query: 87 GAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPG 125
GA +L G V G + L + RC + EPG
Sbjct: 66 GARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPG 104
>gi|239740658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 29.6 bits (65), Expect = 3.0
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 31 KSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMG----SGQLQNL 86
+SL+ A D +H+ L H+ + L G R + +K +G +G+L+
Sbjct: 8 RSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLRAGRLE-- 65
Query: 87 GAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPG 125
GA +L G V G + L + RC + EPG
Sbjct: 66 GARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPG 104
>gi|239756427 PREDICTED: similar to 3-phosphoinositide dependent
protein kinase-1 [Homo sapiens]
Length = 471
Score = 28.9 bits (63), Expect = 5.1
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 207 LGRGGHPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGLTIWEERGRPIAGKGRKE 266
L RGG L T + G +LAC ++ A Q+ +CSC P + + E
Sbjct: 6 LRRGGRQL---TADRGAQLACPVLGYDAVPIQSSVVLCSCPS---------PSMVRTQTE 53
Query: 267 SAQPP 271
S+ PP
Sbjct: 54 SSTPP 58
>gi|40317626 thrombospondin 1 precursor [Homo sapiens]
Length = 1170
Score = 28.1 bits (61), Expect = 8.6
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 136 DLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIG 195
D+ + C++C + NPD A D+D + G+ AD DG I D V++V
Sbjct: 769 DVGDRCDNCPYNHNPDQA------DTD-NNGEGDACAADIDGDGILNERDNCQYVYNVDQ 821
Query: 196 RSLIID 201
R +D
Sbjct: 822 RDTDMD 827
>gi|169204760 PREDICTED: hypothetical protein [Homo sapiens]
Length = 498
Score = 28.1 bits (61), Expect = 8.6
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 36 VAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGT------------GRQAVLKGMGSGQL 83
V G DV+ L +LV LP + LL+GT GR A+L G+G L
Sbjct: 382 VGGDLDVQAQLGIHQLLVLAQLPRHVLLGLLQGTLQICQLAFGITEGRLALLLGLGHCSL 441
Query: 84 Q 84
Q
Sbjct: 442 Q 442
>gi|169205546 PREDICTED: hypothetical protein [Homo sapiens]
Length = 441
Score = 28.1 bits (61), Expect = 8.6
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 36 VAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGT------------GRQAVLKGMGSGQL 83
V G DV+ L +LV LP + LL+GT GR A+L G+G L
Sbjct: 325 VGGDLDVQAQLGIHQLLVLAQLPRHVLLGLLQGTLQICQLAFGITEGRLALLLGLGHCSL 384
Query: 84 Q 84
Q
Sbjct: 385 Q 385
>gi|169204158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 498
Score = 28.1 bits (61), Expect = 8.6
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 36 VAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGT------------GRQAVLKGMGSGQL 83
V G DV+ L +LV LP + LL+GT GR A+L G+G L
Sbjct: 382 VGGDLDVQAQLGIHQLLVLAQLPRHVLLGLLQGTLQICQLAFGITEGRLALLLGLGHCSL 441
Query: 84 Q 84
Q
Sbjct: 442 Q 442
>gi|156546992 zinc finger protein 214 [Homo sapiens]
Length = 606
Score = 28.1 bits (61), Expect = 8.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 119 IDGLEPGLHGLHVHQ---YGDLTNNCNSCGNHFNPDGASH 155
+DG G+H HQ G++ +CN+CG F+ + H
Sbjct: 280 VDGNFHQSSGVHFHQRVHIGEVPYSCNACGKSFSQISSLH 319
>gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]
Length = 431
Score = 28.1 bits (61), Expect = 8.6
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 8 QGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVE--VHLEDQMVLVHTTLPSQEVQAL 65
+GT+ L+F+V + + V + +G GV V H Q +HTT S +
Sbjct: 287 EGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTSFSLPIP 346
Query: 66 LEGT 69
L T
Sbjct: 347 LSST 350
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,986,618
Number of Sequences: 37866
Number of extensions: 583354
Number of successful extensions: 1572
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1514
Number of HSP's gapped (non-prelim): 72
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.