Guide to the Human Genome
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Name: LOC100294246 Sequence: fasta or formatted (155aa) NCBI GI: 239740802
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         12           2
 C cysteine            2.6          4           1
 D aspartate           4.5          7           2
 E glutamate           2.6          4           1
 F phenylalanine       5.2          8           1
 G glycine            12.9         20           2
 H histidine           2.6          4           1
 I isoleucine          3.2          5           1
 K lysine              3.2          5           1
 L leucine             9.0         14           2
 M methionine          0.6          1           1
 N asparagine          0.6          1           1
 P proline             5.8          9           2
 Q glutamine           5.2          8           2
 R arginine            9.7         15           2
 S serine             12.9         20           2
 T threonine           3.9          6           2
 V valine              5.2          8           1
 W tryptophan          1.9          3           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294298          1.000   PREDICTED: hypothetical protein XP_002344098 
LOC100294099          1.000   PREDICTED: hypothetical protein 
LOC100294145          0.976   PREDICTED: hypothetical protein 
CCS                   0.017   copper chaperone for superoxide dismutase 
WRNIP1                0.010   Werner helicase interacting protein isoform 2 
WRNIP1                0.010   Werner helicase interacting protein isoform 1 
SLC13A5               0.010   solute carrier family 13, member 5 isoform b 
SLC13A5               0.010   solute carrier family 13, member 5 isoform a 
LOC100287047          0.007   PREDICTED: hypothetical protein XP_002344159 
LOC100287877          0.007   PREDICTED: hypothetical protein XP_002342071 
TECTA                 0.007   tectorin alpha precursor 
GPR124                0.007   G protein-coupled receptor 124 
GPR37                 0.007   G protein-coupled receptor 37 
LOC100289993          0.007   PREDICTED: hypothetical protein XP_002348146 
LOC100288915          0.007   PREDICTED: hypothetical protein XP_002343820 
BRF2                  0.007   RNA polymerase III transcription initiation factor B...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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