Search of human proteins with 47519877

Search of human proteins with 47519877

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|47519877 5-hydroxytryptamine receptor 3 subunit D isoform 2
[Homo sapiens]
         (279 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|47519877 5-hydroxytryptamine receptor 3 subunit D isoform 2 [...   571   e-163
gi|223468705 5-hydroxytryptamine receptor 3 subunit D isoform 1 ...   547   e-156
gi|47519913 5-hydroxytryptamine receptor 3 subunit E [Homo sapiens]   377   e-105
gi|47519867 5-hydroxytryptamine receptor 3 subunit C [Homo sapiens]   301   5e-82
gi|253735700 5-hydroxytryptamine (serotonin) receptor 3A isoform...   117   1e-26
gi|253735691 5-hydroxytryptamine (serotonin) receptor 3A isoform...   117   1e-26
gi|253735697 5-hydroxytryptamine (serotonin) receptor 3A isoform...   116   2e-26
gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo sapi...    67   2e-11
gi|5174469 5-hydroxytryptamine (serotonin) receptor 3B precursor...    63   3e-10
gi|70995130 cholinergic receptor, nicotinic, alpha 9 precursor [...    61   9e-10
gi|4557457 nicotinic cholinergic receptor alpha 1 isoform b prec...    57   1e-08
gi|87567783 nicotinic cholinergic receptor alpha 1 isoform a pre...    57   1e-08
gi|153792669 cholinergic receptor, nicotinic, alpha polypeptide ...    55   7e-08
gi|4757982 cholinergic receptor, nicotinic, alpha 6 [Homo sapiens]     54   2e-07
gi|4557461 nicotinic acetylcholine receptor delta polypeptide pr...    54   2e-07
gi|4502827 cholinergic receptor, nicotinic, alpha 4 subunit prec...    52   4e-07
gi|19923122 cholinergic receptor, nicotinic, alpha 3 [Homo sapiens]    52   8e-07
gi|23312388 CHRNA7-FAM7A fusion isoform 1 [Homo sapiens]               51   1e-06
gi|23312390 CHRNA7-FAM7A fusion isoform 2 [Homo sapiens]               51   1e-06
gi|4502831 cholinergic receptor, nicotinic, alpha 7 precursor [H...    51   1e-06
gi|4502835 cholinergic receptor, nicotinic, beta polypeptide 3 [...    50   2e-06
gi|4502833 neuronal nicotinic acetylcholine receptor beta 2 prec...    48   1e-05
gi|41327726 nicotinic acetylcholine receptor beta 1 subunit prec...    47   2e-05
gi|4502837 cholinergic receptor, nicotinic, beta 4 [Homo sapiens]      46   4e-05
gi|206725456 zinc activated ligand-gated ion channel [Homo sapiens]    43   3e-04
gi|4557463 nicotinic acetylcholine receptor epsilon polypeptide ...    41   0.001
gi|33589827 cholinergic receptor, nicotinic, alpha 5 [Homo sapiens]    38   0.009
gi|88702793 slit-like 2 [Homo sapiens]                                 35   0.073
gi|61743914 cholinergic receptor, nicotinic, gamma polypeptide p...    34   0.16 
gi|52426761 gamma-aminobutyric acid (GABA) A receptor, epsilon p...    33   0.28 

>gi|47519877 5-hydroxytryptamine receptor 3 subunit D isoform 2
           [Homo sapiens]
          Length = 279

 Score =  571 bits (1472), Expect = e-163
 Identities = 279/279 (100%), Positives = 279/279 (100%)

Query: 1   MASMSIVKATSNTISQCGWSASANWTPSISPSMDRGERSPSALSPTQVAIRRRCRPSPYV 60
           MASMSIVKATSNTISQCGWSASANWTPSISPSMDRGERSPSALSPTQVAIRRRCRPSPYV
Sbjct: 1   MASMSIVKATSNTISQCGWSASANWTPSISPSMDRGERSPSALSPTQVAIRRRCRPSPYV 60

Query: 61  VNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASL 120
           VNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASL
Sbjct: 61  VNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASL 120

Query: 121 VRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQ 180
           VRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQ
Sbjct: 121 VRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQ 180

Query: 181 GRCCPTAPQKGNKGPGLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQK 240
           GRCCPTAPQKGNKGPGLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQK
Sbjct: 181 GRCCPTAPQKGNKGPGLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQK 240

Query: 241 QHSVELWVQFSHAMDALLFRLYLLFMASSIITVICLWNT 279
           QHSVELWVQFSHAMDALLFRLYLLFMASSIITVICLWNT
Sbjct: 241 QHSVELWVQFSHAMDALLFRLYLLFMASSIITVICLWNT 279


>gi|223468705 5-hydroxytryptamine receptor 3 subunit D isoform 1
           [Homo sapiens]
          Length = 404

 Score =  547 bits (1410), Expect = e-156
 Identities = 279/330 (84%), Positives = 279/330 (84%), Gaps = 51/330 (15%)

Query: 1   MASMSIVKATSNTISQCGWSASANWTPSISPSMDRGERSPSALSPTQV------------ 48
           MASMSIVKATSNTISQCGWSASANWTPSISPSMDRGERSPSALSPTQV            
Sbjct: 75  MASMSIVKATSNTISQCGWSASANWTPSISPSMDRGERSPSALSPTQVTRAWRRMSRSFQ 134

Query: 49  ---------------------------------------AIRRRCRPSPYVVNFLVPSGI 69
                                                  AIRRRCRPSPYVVNFLVPSGI
Sbjct: 135 IHHRTSFRTRREWVLLGIQKRTIKVTVATNQYEQAIFHVAIRRRCRPSPYVVNFLVPSGI 194

Query: 70  LIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQ 129
           LIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQ
Sbjct: 195 LIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQ 254

Query: 130 KRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQ 189
           KRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQ
Sbjct: 255 KRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQ 314

Query: 190 KGNKGPGLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQ 249
           KGNKGPGLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQ
Sbjct: 315 KGNKGPGLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQ 374

Query: 250 FSHAMDALLFRLYLLFMASSIITVICLWNT 279
           FSHAMDALLFRLYLLFMASSIITVICLWNT
Sbjct: 375 FSHAMDALLFRLYLLFMASSIITVICLWNT 404


>gi|47519913 5-hydroxytryptamine receptor 3 subunit E [Homo sapiens]
          Length = 471

 Score =  377 bits (969), Expect = e-105
 Identities = 190/232 (81%), Positives = 202/232 (87%), Gaps = 16/232 (6%)

Query: 48  VAIRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMND 107
           VAIRRR  PS YV+N LVPSG L+AIDALSFYLP++SGN  PFK+T+LLGY+VFLLMM+D
Sbjct: 256 VAIRRR--PSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNVFLLMMSD 313

Query: 108 LLPATSTSSHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLP 167
           LLP + T     L+          GVYFALCLSLMVGSLLETIFITHLLHVATTQP PLP
Sbjct: 314 LLPTSGTP----LI----------GVYFALCLSLMVGSLLETIFITHLLHVATTQPPPLP 359

Query: 168 RWLHSLLLHCTGQGRCCPTAPQKGNKGPGLTPTHLPGVKEPEVSAGQMPGPGEAELTGGS 227
           RWLHSLLLHC   GRCCPTAPQK NKGPGLTPTHLPGVKEPEVSAGQMPGP EAELTGGS
Sbjct: 360 RWLHSLLLHCNSPGRCCPTAPQKENKGPGLTPTHLPGVKEPEVSAGQMPGPAEAELTGGS 419

Query: 228 EWTRAQREHEAQKQHSVELWVQFSHAMDALLFRLYLLFMASSIITVICLWNT 279
           EWTRAQREHEAQKQHSVELW+QFSHAMDA+LFRLYLLFMASSIITVICLWNT
Sbjct: 420 EWTRAQREHEAQKQHSVELWLQFSHAMDAMLFRLYLLFMASSIITVICLWNT 471


>gi|47519867 5-hydroxytryptamine receptor 3 subunit C [Homo sapiens]
          Length = 447

 Score =  301 bits (770), Expect = 5e-82
 Identities = 160/232 (68%), Positives = 175/232 (75%), Gaps = 25/232 (10%)

Query: 48  VAIRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMND 107
           VAIRRR  PS Y++N LVPS  L+AIDALSFYLP ES N APFK+T+LLGY+VFLLMMND
Sbjct: 241 VAIRRR--PSLYIINLLVPSSFLVAIDALSFYLPAESENRAPFKITLLLGYNVFLLMMND 298

Query: 108 LLPATSTSSHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLP 167
           LLPA+ T   +              VYFALCLSLMV SLLET+FIT+LLHVATTQP P+P
Sbjct: 299 LLPASGTPLIS--------------VYFALCLSLMVVSLLETVFITYLLHVATTQPPPMP 344

Query: 168 RWLHSLLLHCTGQGRCCPTAPQKGNKGPGLTPTHLPGVKEPEVSAGQMPGPGEAELTGGS 227
           RWLHSLLLHCT  GRCCPTAPQKGNKG GLT THLPG KEP   AG+  GP E E  GGS
Sbjct: 345 RWLHSLLLHCTSPGRCCPTAPQKGNKGLGLTLTHLPGPKEPGELAGKKLGPRETEPDGGS 404

Query: 228 EWTRAQREHEAQKQHSVELWVQFSHAMDALLFRLYLLFMASSIITVICLWNT 279
            WT+ Q          +ELWVQFSHAMD LLFRLYLLFMASSI+TVI LWNT
Sbjct: 405 GWTKTQ---------LMELWVQFSHAMDTLLFRLYLLFMASSILTVIVLWNT 447


>gi|253735700 5-hydroxytryptamine (serotonin) receptor 3A isoform b
           precursor [Homo sapiens]
          Length = 484

 Score =  117 bits (292), Expect = 1e-26
 Identities = 88/253 (34%), Positives = 126/253 (49%), Gaps = 37/253 (14%)

Query: 48  VAIRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMND 107
           V IRRR  P  YVV+ L+PS  L+ +D + FYLP  SG    FK+T+LLGYSVFL++++D
Sbjct: 242 VVIRRR--PLFYVVSLLLPSIFLMVMDIVGFYLPPNSGERVSFKITLLLGYSVFLIIVSD 299

Query: 108 LLPATSTSSHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLP 167
            LPAT+  +               GVYF +C++L+V SL ETIFI  L+H    Q  P+P
Sbjct: 300 TLPATAIGTPLI------------GVYFVVCMALLVISLAETIFIVRLVHKQDLQQ-PVP 346

Query: 168 RWLHSLLLHCTGQGRCC--------PTAPQKGNK-----GPGLTPTHLPG----VKEPEV 210
            WL  L+L       C         P A  +  K       G   +H+ G     K P  
Sbjct: 347 AWLRHLVLERIAWLLCLREQSTSQRPPATSQATKTDDCSAMGNHCSHMGGPQDFEKSPRD 406

Query: 211 SAGQMPGPGEAELT--GGSEWTRAQREHEAQKQHSVEL---WVQFSHAMDALLFRLYLLF 265
                P P EA L   G  +   + R+   ++    E+   W++    +D LLF +YLL 
Sbjct: 407 RCSPPPPPREASLAVCGLLQELSSIRQFLEKRDEIREVARDWLRVGSVLDKLLFHIYLLA 466

Query: 266 MASSIITVICLWN 278
           + +  IT++ LW+
Sbjct: 467 VLAYSITLVMLWS 479


>gi|253735691 5-hydroxytryptamine (serotonin) receptor 3A isoform c
           [Homo sapiens]
          Length = 463

 Score =  117 bits (292), Expect = 1e-26
 Identities = 88/253 (34%), Positives = 126/253 (49%), Gaps = 37/253 (14%)

Query: 48  VAIRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMND 107
           V IRRR  P  YVV+ L+PS  L+ +D + FYLP  SG    FK+T+LLGYSVFL++++D
Sbjct: 221 VVIRRR--PLFYVVSLLLPSIFLMVMDIVGFYLPPNSGERVSFKITLLLGYSVFLIIVSD 278

Query: 108 LLPATSTSSHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLP 167
            LPAT+  +               GVYF +C++L+V SL ETIFI  L+H    Q  P+P
Sbjct: 279 TLPATAIGTPLI------------GVYFVVCMALLVISLAETIFIVRLVHKQDLQQ-PVP 325

Query: 168 RWLHSLLLHCTGQGRCC--------PTAPQKGNK-----GPGLTPTHLPG----VKEPEV 210
            WL  L+L       C         P A  +  K       G   +H+ G     K P  
Sbjct: 326 AWLRHLVLERIAWLLCLREQSTSQRPPATSQATKTDDCSAMGNHCSHMGGPQDFEKSPRD 385

Query: 211 SAGQMPGPGEAELT--GGSEWTRAQREHEAQKQHSVEL---WVQFSHAMDALLFRLYLLF 265
                P P EA L   G  +   + R+   ++    E+   W++    +D LLF +YLL 
Sbjct: 386 RCSPPPPPREASLAVCGLLQELSSIRQFLEKRDEIREVARDWLRVGSVLDKLLFHIYLLA 445

Query: 266 MASSIITVICLWN 278
           + +  IT++ LW+
Sbjct: 446 VLAYSITLVMLWS 458


>gi|253735697 5-hydroxytryptamine (serotonin) receptor 3A isoform a
           precursor [Homo sapiens]
          Length = 516

 Score =  116 bits (291), Expect = 2e-26
 Identities = 92/273 (33%), Positives = 130/273 (47%), Gaps = 45/273 (16%)

Query: 48  VAIRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMND 107
           V IRRR  P  YVV+ L+PS  L+ +D + FYLP  SG    FK+T+LLGYSVFL++++D
Sbjct: 242 VVIRRR--PLFYVVSLLLPSIFLMVMDIVGFYLPPNSGERVSFKITLLLGYSVFLIIVSD 299

Query: 108 LLPATSTSSHASLVRPHPSRDQK--------------------RGVYFALCLSLMVGSLL 147
            LPAT+  +      P  SR Q                      GVYF +C++L+V SL 
Sbjct: 300 TLPATAIGTPLIGKAPPGSRAQSGEKPAPSHLLHVSLASALGCTGVYFVVCMALLVISLA 359

Query: 148 ETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCC--------PTAPQKGNK-----G 194
           ETIFI  L+H    Q  P+P WL  L+L       C         P A  +  K      
Sbjct: 360 ETIFIVRLVHKQDLQQ-PVPAWLRHLVLERIAWLLCLREQSTSQRPPATSQATKTDDCSA 418

Query: 195 PGLTPTHLPG----VKEPEVSAGQMPGPGEAELT--GGSEWTRAQREHEAQKQHSVEL-- 246
            G   +H+ G     K P       P P EA L   G  +   + R+   ++    E+  
Sbjct: 419 MGNHCSHMGGPQDFEKSPRDRCSPPPPPREASLAVCGLLQELSSIRQFLEKRDEIREVAR 478

Query: 247 -WVQFSHAMDALLFRLYLLFMASSIITVICLWN 278
            W++    +D LLF +YLL + +  IT++ LW+
Sbjct: 479 DWLRVGSVLDKLLFHIYLLAVLAYSITLVMLWS 511


>gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo
           sapiens]
          Length = 450

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 30/234 (12%)

Query: 53  RCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPAT 112
           R R + YV N L+P  ++  +  L+F+LP +SG      +TVLL  +VF L++ + +P  
Sbjct: 233 RRRAAAYVCNLLLPCVLISLLAPLAFHLPADSGEKVSLGVTVLLALTVFQLLLAESMPPA 292

Query: 113 STSSHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHS 172
            +     L+          G Y+   ++++  S   TI I + LH       P+P W  +
Sbjct: 293 ES---VPLI----------GKYYMATMTMVTFSTALTILIMN-LHYCGPSVRPVPAWARA 338

Query: 173 LLLHCTGQGRCCPTAPQKGNK-GPGLTPTHLPGVKEPEVSAGQMPGP---------GEAE 222
           LLL    +G C     ++G   G    P   P  + PE  AG   GP          EA 
Sbjct: 339 LLLGHLARGLC---VRERGEPCGQSRPPELSPSPQSPEGGAGPPAGPCHEPRCLCRQEAL 395

Query: 223 LTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDALLFRLYLLFMASSIITVICL 276
           L   +      R H A  Q   E W + +  MD   F L + F  + +++++ L
Sbjct: 396 LHHVATIANTFRSHRA-AQRCHEDWKRLARVMDR--FFLAIFFSMALVMSLLVL 446


>gi|5174469 5-hydroxytryptamine (serotonin) receptor 3B precursor
           [Homo sapiens]
          Length = 441

 Score = 62.8 bits (151), Expect = 3e-10
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 35/255 (13%)

Query: 28  SISPSMDRGERSPSALSPTQVAIRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNC 87
           S+S +    + S    +  Q  +  R  P  YVV+ L+PS  L+ +D  SFYLP      
Sbjct: 211 SVSSTYSILQSSAGGFAQIQFNVVMRRHPLVYVVSLLIPSIFLMLVDLGSFYLPPNCRAR 270

Query: 88  APFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFALCLSLMVGSLL 147
             FK +VL+GY+VF + M++ +P +  S+               G +F +C++ +V SL 
Sbjct: 271 IVFKTSVLVGYTVFRVNMSNQVPRSVGSTPLI------------GHFFTICMAFLVLSLA 318

Query: 148 ETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGLTPTHLPGVKE 207
           ++I +   LH         P      L   T   R  P    +  +           V E
Sbjct: 319 KSIVLVKFLHDEQRGGQEQP---FLCLRGDTDADR--PRVEPRAQRAV---------VTE 364

Query: 208 PEVSAGQMPGPGE-----AELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDALLFRLY 262
             +    +  PG      ++L   S + + Q + + Q+      W+      D LLF+ Y
Sbjct: 365 SSLYGEHLAQPGTLKEVWSQLQSISNYLQTQDQTDQQEAE----WLVLLSRFDRLLFQSY 420

Query: 263 LLFMASSIITVICLW 277
           L  +    IT+  LW
Sbjct: 421 LFMLGIYTITLCSLW 435


>gi|70995130 cholinergic receptor, nicotinic, alpha 9 precursor
           [Homo sapiens]
          Length = 479

 Score = 61.2 bits (147), Expect = 9e-10
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 14/121 (11%)

Query: 55  RPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATST 114
           R S Y+VN L+P  ++  +  LSFYLP  SG      +T+LL  +VF LM+ +++PA   
Sbjct: 236 RSSFYIVNLLIPCVLISFLAPLSFYLPAASGEKVSLGVTILLAMTVFQLMVAEIMPA--- 292

Query: 115 SSHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLL 174
           S +  L+          G Y+   ++L+  S   TI + + +H    +  P+P W   ++
Sbjct: 293 SENVPLI----------GKYYIATMALITASTALTIMVMN-IHFCGAEARPVPHWARVVI 341

Query: 175 L 175
           L
Sbjct: 342 L 342


>gi|4557457 nicotinic cholinergic receptor alpha 1 isoform b
           precursor [Homo sapiens]
          Length = 457

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 43/229 (18%)

Query: 56  PSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTS 115
           P  ++VN ++P  +   +  L FYLP +SG      ++VLL  +VFLL++ +L+P  STS
Sbjct: 231 PLYFIVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIP--STS 288

Query: 116 SHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLL 175
           S   L+          G Y    +  ++ S++ T+ + +  H + +  + +P W+  + +
Sbjct: 289 SAVPLI----------GKYMLFTMVFVIASIIITVIVINTHHRSPSTHV-MPNWVRKVFI 337

Query: 176 HCTGQGRCCPTAPQ--------------------KGNKGPGLTPTHLPGVKEPEVSAGQM 215
                     T  +                     G  GP     H P +K PEV +   
Sbjct: 338 DTIPNIMFFSTMKRPSREKQDKKIFTEDIDISDISGKPGPPPMGFHSPLIKHPEVKSA-- 395

Query: 216 PGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDALLFRLYLL 264
                     G ++     + + +  ++   W   +  MD +L  +++L
Sbjct: 396 --------IEGIKYIAETMKSDQESNNAAAEWKYVAMVMDHILLGVFML 436


>gi|87567783 nicotinic cholinergic receptor alpha 1 isoform a
           precursor [Homo sapiens]
          Length = 482

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 43/229 (18%)

Query: 56  PSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTS 115
           P  ++VN ++P  +   +  L FYLP +SG      ++VLL  +VFLL++ +L+P  STS
Sbjct: 256 PLYFIVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIP--STS 313

Query: 116 SHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLL 175
           S   L+          G Y    +  ++ S++ T+ + +  H + +  + +P W+  + +
Sbjct: 314 SAVPLI----------GKYMLFTMVFVIASIIITVIVINTHHRSPSTHV-MPNWVRKVFI 362

Query: 176 HCTGQGRCCPTAPQ--------------------KGNKGPGLTPTHLPGVKEPEVSAGQM 215
                     T  +                     G  GP     H P +K PEV +   
Sbjct: 363 DTIPNIMFFSTMKRPSREKQDKKIFTEDIDISDISGKPGPPPMGFHSPLIKHPEVKSA-- 420

Query: 216 PGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDALLFRLYLL 264
                     G ++     + + +  ++   W   +  MD +L  +++L
Sbjct: 421 --------IEGIKYIAETMKSDQESNNAAAEWKYVAMVMDHILLGVFML 461


>gi|153792669 cholinergic receptor, nicotinic, alpha polypeptide 2
           (neuronal) [Homo sapiens]
          Length = 529

 Score = 55.1 bits (131), Expect = 7e-08
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 13/122 (10%)

Query: 56  PSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTS 115
           P  Y +N ++P  ++  +  L FYLP + G      ++VLL  +VFLL++ +++P+T   
Sbjct: 265 PLFYTINLIIPCLLISCLTVLVFYLPSDCGEKITLCISVLLSLTVFLLLITEIIPST--- 321

Query: 116 SHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLL 175
              SLV P        G Y    +  +  S++ T+F+ + +H  +     +P W+   LL
Sbjct: 322 ---SLVIP------LIGEYLLFTMIFVTLSIVITVFVLN-VHHRSPSTHTMPHWVRGALL 371

Query: 176 HC 177
            C
Sbjct: 372 GC 373


>gi|4757982 cholinergic receptor, nicotinic, alpha 6 [Homo sapiens]
          Length = 494

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 13/120 (10%)

Query: 56  PSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTS 115
           P  Y +N ++P   +  +  L FYLP + G      ++VLL  +VFLL++ + +P+T   
Sbjct: 240 PMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPST--- 296

Query: 116 SHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLL 175
              SLV P        G Y    +  +  S++ T+F+ + +H  T     +PRW+ ++ L
Sbjct: 297 ---SLVVP------LVGEYLLFTMIFVTLSIVVTVFVLN-IHYRTPTTHTMPRWVKTVFL 346


>gi|4557461 nicotinic acetylcholine receptor delta polypeptide
           precursor [Homo sapiens]
          Length = 517

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 39  SPSALSPTQVAIRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGY 98
           SPS    T   I RR +P  Y++N LVP  ++  +  L FYLP +SG      ++VLL  
Sbjct: 230 SPSRQDITFYLIIRR-KPLFYIINILVPCVLISFMVNLVFYLPADSGEKTSVAISVLLAQ 288

Query: 99  SVFLLMMNDLLPATS 113
           SVFLL+++  LPATS
Sbjct: 289 SVFLLLISKRLPATS 303


>gi|4502827 cholinergic receptor, nicotinic, alpha 4 subunit
           precursor [Homo sapiens]
          Length = 627

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 13/120 (10%)

Query: 56  PSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTS 115
           P  Y +N ++P  ++  +  L FYLP E G      ++VLL  +VFLL++ +++P+T   
Sbjct: 243 PLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPST--- 299

Query: 116 SHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLL 175
              SLV P        G Y    +  +  S++ T+F+ + +H  + +   +P W+  + L
Sbjct: 300 ---SLVIP------LIGEYLLFTMIFVTLSIVITVFVLN-VHHRSPRTHTMPTWVRRVFL 349


>gi|19923122 cholinergic receptor, nicotinic, alpha 3 [Homo sapiens]
          Length = 505

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 13/121 (10%)

Query: 56  PSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTS 115
           P  Y +N ++P  ++  +  L FYLP + G      ++VLL  +VFLL++ + +P+T   
Sbjct: 241 PLFYTINLIIPCLLISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPST--- 297

Query: 116 SHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLL 175
              SLV P        G Y    +  +  S++ T+F+ + +H  T     +P W+ ++ L
Sbjct: 298 ---SLVIP------LIGEYLLFTMIFVTLSIVITVFVLN-VHYRTPTTHTMPSWVKTVFL 347

Query: 176 H 176
           +
Sbjct: 348 N 348


>gi|23312388 CHRNA7-FAM7A fusion isoform 1 [Homo sapiens]
          Length = 412

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 23/175 (13%)

Query: 50  IRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLL 109
           +  R R   Y +N L+P  ++ A+  L F LP +SG      +TVLL  +VF+L++ +++
Sbjct: 134 VTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIM 193

Query: 110 PATSTSSHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRW 169
           PATS S    L+            YFA  + ++  S++ T+ +    H        +P+W
Sbjct: 194 PATSDS--VPLI----------AQYFASTMIIVGLSVVVTVIVLQ-YHHHDPDGGKMPKW 240

Query: 170 LHSLLLH-CT--------GQGRCCPTAPQKGNKGPGLTPTHLPGVKEPEVSAGQM 215
              +LL+ C         G+ +  P    K  +   L    +  V  P  S G +
Sbjct: 241 TRVILLNWCAWFLRMKRPGEDKVRPACQHK-QRRCSLASVEMSAVAPPPASNGNL 294


>gi|23312390 CHRNA7-FAM7A fusion isoform 2 [Homo sapiens]
          Length = 321

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 23/175 (13%)

Query: 50  IRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLL 109
           +  R R   Y +N L+P  ++ A+  L F LP +SG      +TVLL  +VF+L++ +++
Sbjct: 43  VTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIM 102

Query: 110 PATSTSSHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRW 169
           PATS S    L+            YFA  + ++  S++ T+ +    H        +P+W
Sbjct: 103 PATSDS--VPLI----------AQYFASTMIIVGLSVVVTVIVLQ-YHHHDPDGGKMPKW 149

Query: 170 LHSLLLH-CT--------GQGRCCPTAPQKGNKGPGLTPTHLPGVKEPEVSAGQM 215
              +LL+ C         G+ +  P    K  +   L    +  V  P  S G +
Sbjct: 150 TRVILLNWCAWFLRMKRPGEDKVRPACQHK-QRRCSLASVEMSAVAPPPASNGNL 203


>gi|4502831 cholinergic receptor, nicotinic, alpha 7 precursor [Homo
           sapiens]
          Length = 502

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 23/175 (13%)

Query: 50  IRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLL 109
           +  R R   Y +N L+P  ++ A+  L F LP +SG      +TVLL  +VF+L++ +++
Sbjct: 224 VTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIM 283

Query: 110 PATSTSSHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRW 169
           PATS S    L+            YFA  + ++  S++ T+ +    H        +P+W
Sbjct: 284 PATSDS--VPLI----------AQYFASTMIIVGLSVVVTVIVLQ-YHHHDPDGGKMPKW 330

Query: 170 LHSLLLH-CT--------GQGRCCPTAPQKGNKGPGLTPTHLPGVKEPEVSAGQM 215
              +LL+ C         G+ +  P    K  +   L    +  V  P  S G +
Sbjct: 331 TRVILLNWCAWFLRMKRPGEDKVRPACQHK-QRRCSLASVEMSAVAPPPASNGNL 384


>gi|4502835 cholinergic receptor, nicotinic, beta polypeptide 3
           [Homo sapiens]
          Length = 458

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 22/222 (9%)

Query: 56  PSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTS 115
           P  Y +  ++P   L  +  L FYLP + G       +VL+  +VFLL++ +++P  S+S
Sbjct: 233 PLFYTLFLIIPCLGLSFLTVLVFYLPSDEGEKLSLSTSVLVSLTVFLLVIEEIIP--SSS 290

Query: 116 SHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLL 175
               L+          G Y    +  +  S++ T+F+ ++ H +++   P+  W+  L L
Sbjct: 291 KVIPLI----------GEYLLFIMIFVTLSIIVTVFVINVHHRSSSTYHPMAPWVKRLFL 340

Query: 176 HCTGQGRCCP------TAPQKGNKGPGLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEW 229
               +  C        ++P+K    P +    L   K+ ++S G+      A L   ++ 
Sbjct: 341 QKLPKLLCMKDHVDRYSSPEKEESQPVVKGKVLEKKKQKQLSDGEK--VLVAFLEKAADS 398

Query: 230 TRAQREHEAQKQHSVELWVQFSHAMDALLFRLYL-LFMASSI 270
            R    H  +K+H +   VQ    +  +L R++L LF+  S+
Sbjct: 399 IRYISRH-VKKEHFISQVVQDWKFVAQVLDRIFLWLFLIVSV 439


>gi|4502833 neuronal nicotinic acetylcholine receptor beta 2
           precursor [Homo sapiens]
          Length = 502

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 13/123 (10%)

Query: 53  RCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPAT 112
           R +P  Y +N ++P  ++ ++  L FYLP + G      ++VLL  +VFLL+++ ++P T
Sbjct: 231 RRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPT 290

Query: 113 STSSHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHS 172
           S      LV          G Y    + L+  S++ ++ + ++ H + T     P W+  
Sbjct: 291 SLD--VPLV----------GKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHTMAP-WVKV 337

Query: 173 LLL 175
           + L
Sbjct: 338 VFL 340


>gi|41327726 nicotinic acetylcholine receptor beta 1 subunit
           precursor [Homo sapiens]
          Length = 501

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 36/213 (16%)

Query: 31  PSMDRGERSPSALSPTQVAIRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPF 90
           P   RG R           I RR +P  Y+VN + P  ++  +    FYLP ++G     
Sbjct: 221 PGDPRGGREGQRQEVIFYLIIRR-KPLFYLVNVIAPCILITLLAIFVFYLPPDAGEKMGL 279

Query: 91  KMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETI 150
            +  LL  +VFLL++ D +P TS S    +             Y    + L+  S++ ++
Sbjct: 280 SIFALLTLTVFLLLLADKVPETSLSVPIII------------KYLMFTMVLVTFSVILSV 327

Query: 151 FITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGLTPTHLPGVKEPEV 210
            + + LH  +     +P W+  + +H                      P +L  +K P+ 
Sbjct: 328 VVLN-LHHRSPHTHQMPLWVRQIFIH--------------------KLPLYL-RLKRPKP 365

Query: 211 SAGQMPGPGEAELTGGSEWTRAQREHEAQKQHS 243
               MP P     + GS W R   E+  +K  S
Sbjct: 366 ERDLMPEPPHCS-SPGSGWGRGTDEYFIRKPPS 397


>gi|4502837 cholinergic receptor, nicotinic, beta 4 [Homo sapiens]
          Length = 498

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 15/165 (9%)

Query: 13  TISQCGWSASANWTPSISPSMDR-GERSPSALSPTQVAIRRRCRPSPYVVNFLVPSGILI 71
           T S   ++ S  W     P       + PS +  T   I +R +P  Y +N ++P  +  
Sbjct: 189 TASMDDFTPSGEWDIVALPGRRTVNPQDPSYVDVTYDFIIKR-KPLFYTINLIIPCVLTT 247

Query: 72  AIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKR 131
            +  L FYLP + G      ++VLL  + FLL+++ ++P TS      L+          
Sbjct: 248 LLAILVFYLPSDCGEKMTLCISVLLALTFFLLLISKIVPPTSLD--VPLI---------- 295

Query: 132 GVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLH 176
           G Y    + L+  S++ ++ + ++ H + +     P W+    LH
Sbjct: 296 GKYLMFTMVLVTFSIVTSVCVLNVHHRSPSTHTMAP-WVKRCFLH 339


>gi|206725456 zinc activated ligand-gated ion channel [Homo sapiens]
          Length = 412

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 23/137 (16%)

Query: 40  PSALSPT-QVAIRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGY 98
           P  L P  QV +R +      ++  LVP+  L+  D     LPL +     +K+T+LL Y
Sbjct: 213 PQQLVPCFQVTLRLKNTALKSIIALLVPAEALLLADVCGGLLPLRAIERIGYKVTLLLSY 272

Query: 99  SVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGV---YFALCLSLMVGSLLETIFITHL 155
            V                H+SLV+  PS      +   YF + L L+  S +ET+ +  L
Sbjct: 273 LVL---------------HSSLVQALPSSSSCNPLLIYYFTILLLLLFLSTIETVLLAGL 317

Query: 156 LH----VATTQPLPLPR 168
           L      A + P P PR
Sbjct: 318 LARGNLGAKSGPSPAPR 334


>gi|4557463 nicotinic acetylcholine receptor epsilon polypeptide
           precursor [Homo sapiens]
          Length = 493

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 19  WSASANWTPSISPSMDRGERSPSALSPTQV----AIRRRCRPSPYVVNFLVPSGILIAID 74
           ++ +  W     P + R     +   P +     ++  R +P  YV+N +VP  ++  + 
Sbjct: 199 YTENGEWAIDFCPGVIRRHHGGATDGPGETDVIYSLIIRRKPLFYVINIIVPCVLISGLV 258

Query: 75  ALSFYLPLES-GNCAPFKMTVLLGYSVFLLMMNDLLPATSTS 115
            L+++LP ++ G      + VLL  +VFL ++   +P TS S
Sbjct: 259 LLAYFLPAQAGGQKCTVSINVLLAQTVFLFLIAQKIPETSLS 300


>gi|33589827 cholinergic receptor, nicotinic, alpha 5 [Homo sapiens]
          Length = 468

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 12/121 (9%)

Query: 56  PSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTS 115
           P  Y +  ++P   L  +  L FYLP   G       +VL+  +VFLL++ +++P  S+S
Sbjct: 250 PLFYTLFLIIPCIGLSFLTVLVFYLPSNEGEKICLCTSVLVSLTVFLLVIEEIIP--SSS 307

Query: 116 SHASLVRPHPSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLL 175
               L+          G Y    +  +  S++ T+F  ++ H +++    +   +  + L
Sbjct: 308 KVIPLI----------GEYLVFTMIFVTLSIMVTVFAINIHHRSSSTHNAMAPLVRKIFL 357

Query: 176 H 176
           H
Sbjct: 358 H 358


>gi|88702793 slit-like 2 [Homo sapiens]
          Length = 673

 Score = 35.0 bits (79), Expect = 0.073
 Identities = 25/55 (45%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 176 HCTGQGRCCPTAPQ-KGNKGPGLTPTHLPGVKEP-EVSAGQMPGPGEAELTGGSE 228
           +C  +GR    A Q KG  GPG  P  L GVK P E       G GEA L  GSE
Sbjct: 597 YCVRRGRAMAAAAQDKGQVGPGAGPLELEGVKVPLEPGPKATEGGGEA-LPSGSE 650


>gi|61743914 cholinergic receptor, nicotinic, gamma polypeptide
           precursor [Homo sapiens]
          Length = 517

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 55  RPSPYVVNFLVPSGILIAIDALSFYLPLES-GNCAPFKMTVLLGYSVFLLMMNDLLPATS 113
           +P  YV+N + P  ++ ++  L  +LP ++ G      + VLL  +VFL ++   +P TS
Sbjct: 240 KPLFYVINIIAPCVLISSVAILIHFLPAKAGGQKCTVAINVLLAQTVFLFLVAKKVPETS 299


>gi|52426761 gamma-aminobutyric acid (GABA) A receptor, epsilon
           precursor [Homo sapiens]
          Length = 506

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 16/162 (9%)

Query: 65  VPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPH 124
           VPS +   +  +SF++  ES   AP + +         L +  +L  T+  + +    P 
Sbjct: 286 VPSSVTTMLSWVSFWIKTES---APARTS---------LGITSVLTMTTLGTFSRKNFPR 333

Query: 125 PSRDQKRGVYFALCLSLMVGSLLETIFITHLLHVAT----TQPLPLPRWLHSLLLHCTGQ 180
            S       Y A+C      +LLE   +  L++  T    +  L  PR           +
Sbjct: 334 VSYITALDFYIAICFVFCFCALLEFAVLNFLIYNQTKAHASPKLRHPRINSRAHARTRAR 393

Query: 181 GRCCPTAPQKGNKGPGLTPTHLPGVKEPEVSAGQMPGPGEAE 222
            R C    Q+      +T     G + P  SA Q P PG  E
Sbjct: 394 SRACARQHQEAFVCQIVTTEGSDGEERPSCSAQQPPSPGSPE 435


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,131,818
Number of Sequences: 37866
Number of extensions: 645925
Number of successful extensions: 2270
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2184
Number of HSP's gapped (non-prelim): 105
length of query: 279
length of database: 18,247,518
effective HSP length: 101
effective length of query: 178
effective length of database: 14,423,052
effective search space: 2567303256
effective search space used: 2567303256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.