Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 46409458

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|46409458 hypothetical protein LOC389658 [Homo sapiens]
         (129 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|46409458 hypothetical protein LOC389658 [Homo sapiens]             270   2e-73
gi|148228293 hypothetical protein LOC285016 [Homo sapiens]            122   8e-29
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap...    31   0.24 
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap...    31   0.24 
gi|4758062 cytokine receptor-like factor 1 [Homo sapiens]              31   0.31 
gi|239582755 myosin IG [Homo sapiens]                                  30   0.69 
gi|89257335 oleoyl-ACP hydrolase isoform 2 [Homo sapiens]              30   0.69 
gi|8922871 oleoyl-ACP hydrolase isoform 1 [Homo sapiens]               30   0.69 
gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens]         29   1.2  
gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens]        29   1.2  
gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens]        29   1.2  
gi|71979663 growth factor receptor-bound protein 14 [Homo sapiens]     28   1.5  
gi|118600969 C-type lectin domain family 17, member A [Homo sapi...    28   2.0  
gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]          28   2.6  
gi|166362732 ELK1 protein [Homo sapiens]                               28   2.6  
gi|166362730 ELK1 protein [Homo sapiens]                               28   2.6  
gi|239757718 PREDICTED: hypothetical protein XP_002345530 [Homo ...    28   2.6  
gi|239752205 PREDICTED: hypothetical protein XP_002348148 [Homo ...    28   2.6  
gi|239746728 PREDICTED: hypothetical protein XP_002343821 [Homo ...    28   2.6  
gi|5032223 plexin C1 [Homo sapiens]                                    28   2.6  
gi|57222570 codanin 1 [Homo sapiens]                                   28   2.6  
gi|221625422 ephrin receptor EphA5 isoform b precursor [Homo sap...    27   3.4  
gi|221625401 ephrin receptor EphA5 isoform a precursor [Homo sap...    27   3.4  
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo...    27   3.4  
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo...    27   3.4  
gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens]      27   4.5  
gi|4826988 ribosomal protein L3-like [Homo sapiens]                    27   4.5  

>gi|46409458 hypothetical protein LOC389658 [Homo sapiens]
          Length = 129

 Score =  270 bits (691), Expect = 2e-73
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MRPLKPGAPLPALFLLALALSPHGAHGRPRGRRGARVTDKEPKPLLFLPAAGAGRTPSGS 60
           MRPLKPGAPLPALFLLALALSPHGAHGRPRGRRGARVTDKEPKPLLFLPAAGAGRTPSGS
Sbjct: 1   MRPLKPGAPLPALFLLALALSPHGAHGRPRGRRGARVTDKEPKPLLFLPAAGAGRTPSGS 60

Query: 61  RSAEIFPRDSNLKDKFIKHFTGPVTFSPECSKHFHRLYYNTRECSTPAYYKRCARLLTRL 120
           RSAEIFPRDSNLKDKFIKHFTGPVTFSPECSKHFHRLYYNTRECSTPAYYKRCARLLTRL
Sbjct: 61  RSAEIFPRDSNLKDKFIKHFTGPVTFSPECSKHFHRLYYNTRECSTPAYYKRCARLLTRL 120

Query: 121 AVSPLCSQT 129
           AVSPLCSQT
Sbjct: 121 AVSPLCSQT 129


>gi|148228293 hypothetical protein LOC285016 [Homo sapiens]
          Length = 152

 Score =  122 bits (306), Expect = 8e-29
 Identities = 54/79 (68%), Positives = 64/79 (81%)

Query: 50  AAGAGRTPSGSRSAEIFPRDSNLKDKFIKHFTGPVTFSPECSKHFHRLYYNTRECSTPAY 109
           A  AG  PS  +  EI PRD  +KDKF+KH TGP+ FSP+CSKHFHRLY+NTR+C+ PAY
Sbjct: 71  AEAAGLGPSPEQRVEIVPRDLRMKDKFLKHLTGPLYFSPKCSKHFHRLYHNTRDCTIPAY 130

Query: 110 YKRCARLLTRLAVSPLCSQ 128
           YKRCARLLTRLAVSP+C +
Sbjct: 131 YKRCARLLTRLAVSPVCME 149


>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
           sapiens]
          Length = 1038

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 40  KEPKPL---LFLPAAGAGRTPSGSRSAEIF 66
           + P PL   LFLP  G G+ PS +++AEIF
Sbjct: 678 RPPPPLEDNLFLPPQGGGKPPSSAQTAEIF 707


>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
           sapiens]
          Length = 1086

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 40  KEPKPL---LFLPAAGAGRTPSGSRSAEIF 66
           + P PL   LFLP  G G+ PS +++AEIF
Sbjct: 756 RPPPPLEDNLFLPPQGGGKPPSSAQTAEIF 785


>gi|4758062 cytokine receptor-like factor 1 [Homo sapiens]
          Length = 422

 Score = 30.8 bits (68), Expect = 0.31
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 29 PRGRRG-ARVTDKEPKPLL----FLPAAGAGRTPSGSRSAEIFPRDSNL 72
          P GRRG A  + + P PLL     L   GA R  SG+ +A I P+D  L
Sbjct: 2  PAGRRGPAAQSARRPPPLLPLLLLLCVLGAPRAGSGAHTAVISPQDPTL 50


>gi|239582755 myosin IG [Homo sapiens]
          Length = 1018

 Score = 29.6 bits (65), Expect = 0.69
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 62  SAEIFPRDSNL---KDKFIKHFTGPVTFSPE---------CSKHFHRLYYNTRECSTPAY 109
           S ++ P D  +   +D  IKH+ G VT+S E           + F RL YN+ + +  A 
Sbjct: 499 SRQLCPTDKTMEFGRDFRIKHYAGDVTYSVEGFIDKNRDFLFQDFKRLLYNSTDPTLRAM 558

Query: 110 YKRCARLLTRLAVSPLCSQT 129
           +    + +T +   PL + T
Sbjct: 559 WPDGQQDITEVTKRPLTAGT 578


>gi|89257335 oleoyl-ACP hydrolase isoform 2 [Homo sapiens]
          Length = 265

 Score = 29.6 bits (65), Expect = 0.69
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 39  DKEPKPL-LFLPAAGAGRTPSGSRSAEIFPRDSNLKDKFIKHFTGPVTFSPECSKHFHRL 97
           + +P+PL LFL +A    TP  S++    P+D  L ++ I H+      +P   KHF   
Sbjct: 117 NNQPEPLHLFLSSA----TPVHSKAWHRIPKDDELSEEQISHYLMEFGGTP---KHFAEA 169

Query: 98  YYNTRECS 105
               ++CS
Sbjct: 170 KEFVKQCS 177


>gi|8922871 oleoyl-ACP hydrolase isoform 1 [Homo sapiens]
          Length = 318

 Score = 29.6 bits (65), Expect = 0.69
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 39  DKEPKPL-LFLPAAGAGRTPSGSRSAEIFPRDSNLKDKFIKHFTGPVTFSPECSKHFHRL 97
           + +P+PL LFL +A    TP  S++    P+D  L ++ I H+      +P   KHF   
Sbjct: 170 NNQPEPLHLFLSSA----TPVHSKAWHRIPKDDELSEEQISHYLMEFGGTP---KHFAEA 222

Query: 98  YYNTRECS 105
               ++CS
Sbjct: 223 KEFVKQCS 230


>gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens]
          Length = 424

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3   PLKPGAPLPALF---LLALALSPHGAHGRPRGRRGARVTDKEPKPLLFLPAAGAGRTP 57
           P    A LPA F   L AL  +P G  G P     +     +P P L LP A  G  P
Sbjct: 341 PSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPP 398


>gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens]
          Length = 403

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3   PLKPGAPLPALF---LLALALSPHGAHGRPRGRRGARVTDKEPKPLLFLPAAGAGRTP 57
           P    A LPA F   L AL  +P G  G P     +     +P P L LP A  G  P
Sbjct: 320 PSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPP 377


>gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens]
          Length = 403

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3   PLKPGAPLPALF---LLALALSPHGAHGRPRGRRGARVTDKEPKPLLFLPAAGAGRTP 57
           P    A LPA F   L AL  +P G  G P     +     +P P L LP A  G  P
Sbjct: 320 PSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPP 377


>gi|71979663 growth factor receptor-bound protein 14 [Homo sapiens]
          Length = 540

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 8   APLPALFLLALALSPHGAHGRPRGRRGARVTDKEPKPLLFLPAAGAGRTPSGS-RSAEIF 66
           AP P L   AL   P G  G    RR  +  D    P +  P      +P  S  SA++F
Sbjct: 40  APAPWLHARALLPLPDGTRGCAADRRKKKDLDVPEMPSIPNPFPELCCSPFTSVLSADLF 99

Query: 67  PRDSNLKDKFIKHFT 81
           P+ ++ K + IK ++
Sbjct: 100 PKANSRKKQVIKVYS 114


>gi|118600969 C-type lectin domain family 17, member A [Homo
          sapiens]
          Length = 289

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 3  PLKPGAPLPALFLLALALSPHGAHGRPRGRRGARVTDKEPKP 44
          P K   P PAL    L+ S  G+   PR  R A+ T+K P P
Sbjct: 58 PYKDLPPKPAL---TLSFSSPGSSAPPRPPRAAKETEKPPLP 96


>gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 2   RPLKPGAPLPALFLLALALSPHGAHGRPRGRRGA-RVTDKEPKPLLFLPA-----AGAGR 55
           RP   GAP PA  L      P GA   P GRR   R     P PL   P+       A  
Sbjct: 57  RPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAP 116

Query: 56  TPSGSR 61
            P+GSR
Sbjct: 117 PPAGSR 122


>gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 2   RPLKPGAPLPALFLLALALSPHGAHGRPRGRRGA-RVTDKEPKPLLFLPA-----AGAGR 55
           RP   GAP PA  L      P GA   P GRR   R     P PL   P+       A  
Sbjct: 57  RPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAP 116

Query: 56  TPSGSR 61
            P+GSR
Sbjct: 117 PPAGSR 122


>gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 2   RPLKPGAPLPALFLLALALSPHGAHGRPRGRRGA-RVTDKEPKPLLFLPA-----AGAGR 55
           RP   GAP PA  L      P GA   P GRR   R     P PL   P+       A  
Sbjct: 57  RPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAP 116

Query: 56  TPSGSR 61
            P+GSR
Sbjct: 117 PPAGSR 122


>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
          Length = 1192

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 25/97 (25%)

Query: 6   PGAPLPALFLLALALSPHG----------AHGRPRGRRGARVTDKEPKPLLFL------- 48
           P  P PA  + A +  P G          A G  RGR G R + ++ K L F+       
Sbjct: 296 PPTPSPATAVTAASAQPPGPAPPITLEPPAPGLKRGREGGRASTRDRKMLKFISGIFTKS 355

Query: 49  --------PAAGAGRTPSGSRSAEIFPRDSNLKDKFI 77
                   P  G     SGS S E+   +     K +
Sbjct: 356 TGGPPGSGPLPGPPSLSSGSGSRELLGAELRASPKAV 392


>gi|166362732 ELK1 protein [Homo sapiens]
          Length = 428

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 42  PKPLLFLPAA---GAGRTPSGSRSAEIFPRDSNLK 73
           P+P + LP+A   GA   PSGSRS    P ++ L+
Sbjct: 175 PRPAVVLPSAAPAGAAAPPSGSRSTSPSPLEACLE 209


>gi|166362730 ELK1 protein [Homo sapiens]
          Length = 428

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 42  PKPLLFLPAA---GAGRTPSGSRSAEIFPRDSNLK 73
           P+P + LP+A   GA   PSGSRS    P ++ L+
Sbjct: 175 PRPAVVLPSAAPAGAAAPPSGSRSTSPSPLEACLE 209


>gi|239757718 PREDICTED: hypothetical protein XP_002345530 [Homo
           sapiens]
          Length = 242

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 9/33 (27%)

Query: 2   RPLKPGAPLPALFLLALALSPHGAHGRPRGRRG 34
           RPL PG P+PA    ALALS         GRRG
Sbjct: 215 RPLAPGPPVPAAGPAALALS---------GRRG 238


>gi|239752205 PREDICTED: hypothetical protein XP_002348148 [Homo
           sapiens]
          Length = 242

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 9/33 (27%)

Query: 2   RPLKPGAPLPALFLLALALSPHGAHGRPRGRRG 34
           RPL PG P+PA    ALALS         GRRG
Sbjct: 215 RPLAPGPPVPAAGPAALALS---------GRRG 238


>gi|239746728 PREDICTED: hypothetical protein XP_002343821 [Homo
           sapiens]
          Length = 242

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 9/33 (27%)

Query: 2   RPLKPGAPLPALFLLALALSPHGAHGRPRGRRG 34
           RPL PG P+PA    ALALS         GRRG
Sbjct: 215 RPLAPGPPVPAAGPAALALS---------GRRG 238


>gi|5032223 plexin C1 [Homo sapiens]
          Length = 1568

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 2  RPLKPGAPLPAL-FLLALALSPHGA 25
          RP +P APLP L +LLALA    GA
Sbjct: 11 RPPRPAAPLPLLAYLLALAAPGRGA 35


>gi|57222570 codanin 1 [Homo sapiens]
          Length = 1227

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 17/35 (48%), Positives = 17/35 (48%)

Query: 2  RPLKPGAPLPALFLLALALSPHGAHGRPRGRRGAR 36
          R L  G P PA    A A  P    G PRG RGAR
Sbjct: 63 RVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGAR 97


>gi|221625422 ephrin receptor EphA5 isoform b precursor [Homo
           sapiens]
          Length = 1015

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 71  NLKDKFIKHFTGPVTFSPECSKHFHRLYYNTREC----STPAYYKRCARLLTRLAVSP 124
           +L D+ +K  T      P   K F+  + +   C    S   YYK+C  ++  LAV P
Sbjct: 187 DLGDRVMKLNTEVRDVGPLSKKGFYLAFQDVGACIALVSVRVYYKKCPSVVRHLAVFP 244


>gi|221625401 ephrin receptor EphA5 isoform a precursor [Homo
           sapiens]
          Length = 1037

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 71  NLKDKFIKHFTGPVTFSPECSKHFHRLYYNTREC----STPAYYKRCARLLTRLAVSP 124
           +L D+ +K  T      P   K F+  + +   C    S   YYK+C  ++  LAV P
Sbjct: 187 DLGDRVMKLNTEVRDVGPLSKKGFYLAFQDVGACIALVSVRVYYKKCPSVVRHLAVFP 244


>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 3   PLKPGAPLPALFLLALALSPHGAHGRPRGRRGARVTDKEPKPL-----------LFLPAA 51
           P +PG  LP L L A A S   A        G   T   P P            +  PA 
Sbjct: 284 PPQPGPHLPPLGLPAPAASAATAAAPSTVSSGPPATPVAPAPSADGSAAPAGVGVPPPAT 343

Query: 52  GAGRTPSGSRSA-EIFPRDSNLKDKFIKHFTGPVTFS-PECSKHFHR 96
           G G  P       ++F + S+L    I H TG   FS   CSK F+R
Sbjct: 344 GGGDGPFACPLCWKVFKKPSHLHQHQIIH-TGEKPFSCSVCSKSFNR 389


>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 3   PLKPGAPLPALFLLALALSPHGAHGRPRGRRGARVTDKEPKPL-----------LFLPAA 51
           P +PG  LP L L A A S   A        G   T   P P            +  PA 
Sbjct: 284 PPQPGPHLPPLGLPAPAASAATAAAPSTVSSGPPATPVAPAPSADGSAAPAGVGVPPPAT 343

Query: 52  GAGRTPSGSRSA-EIFPRDSNLKDKFIKHFTGPVTFS-PECSKHFHR 96
           G G  P       ++F + S+L    I H TG   FS   CSK F+R
Sbjct: 344 GGGDGPFACPLCWKVFKKPSHLHQHQIIH-TGEKPFSCSVCSKSFNR 389


>gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens]
          Length = 1992

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 13/86 (15%)

Query: 35  ARVTDKEPKPLLFLPAAGAGRTPSGSRSAEIFPRDSNLKDKFIKHFTGPVTFSPECSKHF 94
           AR   ++P PL     +G   +      A++   D  L   FIK   G            
Sbjct: 793 ARAIQRKPNPLANSNTSGYSESKKDDARAQLMKEDPELAKSFIKTLFGV----------- 841

Query: 95  HRLYYNTRECSTPAYYKRCARLLTRL 120
             LY      + PA   +C R + R+
Sbjct: 842 --LYEVYSSSAGPAVRHKCLRAILRI 865


>gi|4826988 ribosomal protein L3-like [Homo sapiens]
          Length = 407

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 18/79 (22%)

Query: 37  VTDKEPKPLLFLPAAGAGRTPSGSRSAEIFPRDSNLKDKFIKHFTGPVTFSPECSKHFHR 96
           VT  E  PL+ +   G   TP G RS          K  F +H       S EC + F++
Sbjct: 76  VTIVETPPLVVVGVVGYVATPRGLRS---------FKTIFAEH------LSDECRRRFYK 120

Query: 97  LYYNTRECSTPAYYKRCAR 115
            ++ +++    A+ K C R
Sbjct: 121 DWHKSKK---KAFTKACKR 136


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,278,184
Number of Sequences: 37866
Number of extensions: 336114
Number of successful extensions: 937
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 61
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press